prot_H-paniculata_contig6686.14575.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6686.14575.1
Unique Nameprot_H-paniculata_contig6686.14575.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length234
Homology
BLAST of mRNA_H-paniculata_contig6686.14575.1 vs. uniprot
Match: D8LT01_ECTSI (DNA polymerase delta subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT01_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 7.570e-67
Identity = 146/222 (65.77%), Postives = 165/222 (74.32%), Query Frame = 0
Query:    9 GGTQVQYHEDLEGWVLDERKVVTFRWLALVLSVTANAAKKMLYDFCQHQGADKISATYLVVGRTGSTGGKGQVSDATVEVRLVPFEALESTKKSLARVTSVHVYSVQAAPSTTTTVDVGAQLWATDSEHSREMLDQSTEAGASLRSHRLSGVRCASVDDVPPPSAPTPPAQVNEESPFALRRXXXXXXXXXXXXXXXXXXXXXAPEKLKGKAIDPKDFFSGA 230
            GGTQVQY ++LEGWVLDE+KVVTFRWLALVLSVTANAAKKMLYDFCQ QG  K+SATYLVVGR+G  GG G      VEV+LV  E L+ST+K+L  VT VHVYSVQ AP +    D+  QLWATD EH++EM+++STEAGA+LR+HRLSGVRC    DVP P AP                XXXXXXXXXXXXXXXXXXX  A  K KGKAI PKDFF+ A
Sbjct:   10 GGTQVQYLDELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFCQRQGERKVSATYLVVGRSG-IGGFG-----AVEVKLVSAEGLDSTRKALETVTCVHVYSVQPAPCSQPAADMSTQLWATDLEHTKEMVEESTEAGANLRTHRLSGVRCPEGVDVPVPKAPPXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXKNASSKPKGKAIAPKDFFAAA 222          
BLAST of mRNA_H-paniculata_contig6686.14575.1 vs. uniprot
Match: UPI00148A5E77 (DNA polymerase delta subunit 3 isoform X1 n=3 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A5E77)

HSP 1 Score: 80.5 bits (197), Expect = 1.350e-14
Identity = 53/109 (48.62%), Postives = 65/109 (59.63%), Query Frame = 0
Query:   11 TQVQYHEDLEGWVLDERKVVTFRWLALVLSVTANAAKKMLYDFCQHQGADKI--SATYLVVGRTGSTGGKGQVSDATVEVRLVPFEALESTKKSLARVTSVHVYSVQAA 117
            T   Y E+LE +V DE K+VT++WL+L L V  N AK+MLY F + Q   KI  +ATY V G   S  G  QV   T  V  +P E LE+ K SL  V S+HVYSVQ A
Sbjct:    3 TDSMYLENLEEYVNDEGKIVTYKWLSLNLHVHVNEAKQMLYTFVEEQKKRKIHVAATYFVSGMCKSVDGC-QVQTYTCTV--IPEEELETFKNSLTTVHSIHVYSVQKA 108          
BLAST of mRNA_H-paniculata_contig6686.14575.1 vs. uniprot
Match: A0A210R1H9_MIZYE (DNA polymerase delta subunit 3 n=4 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210R1H9_MIZYE)

HSP 1 Score: 81.6 bits (200), Expect = 3.230e-14
Identity = 50/121 (41.32%), Postives = 67/121 (55.37%), Query Frame = 0
Query:    1 MMVDGSSEGGTQVQYHEDLEGWVLDERKVVTFRWLALVLSVTANAAKKMLYDFCQHQ----GADKISATYLVVGRTGSTGGKGQVSDATVEVRLVPFEALESTKKSLARVTSVHVYSVQAA 117
            +++ G+ +  T   Y E+LE +V DE K+VT+RW +  L V  N AK+MLY F Q Q      D +S TY V G T    G  Q    TV    V  E LE+ + +L+ VTS H+YSVQ A
Sbjct:   70 LIIAGNKKMATDTLYLENLEEYVNDENKIVTYRWFSTNLKVHVNQAKQMLYAFVQDQRNNHDNDNLSVTYFVAGLTKPVNGHQQTHKCTV----VKEEDLEAYRSTLSVVTSSHIYSVQRA 186          
BLAST of mRNA_H-paniculata_contig6686.14575.1 vs. uniprot
Match: UPI0001CB96C3 (DNA polymerase delta subunit 3-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CB96C3)

HSP 1 Score: 79.7 bits (195), Expect = 1.050e-13
Identity = 53/138 (38.41%), Postives = 78/138 (56.52%), Query Frame = 0
Query:   15 YHEDLEGWVLDERKVVTFRWLALVLSVTANAAKKMLYDFCQHQGADKISATYLVVGRTGSTGGKGQVSDATV--EVRLVPFEALESTKKSLARVTSVHVYSVQAAPSTTTTVDVGAQLWATDSEHSREMLDQSTEAGA 150
            Y E+L+ +V+DE K+VT++WL+  LSV  N AK+MLY + Q Q    +  TYLV       GG+ +  D  V  ++ LV    LE+TK SL +VTSVH+YS+         +     L+  D + ++E L QS + GA
Sbjct:    7 YLENLQEYVVDENKIVTYKWLSKTLSVHVNQAKQMLYMYVQKQKKKDLCVTYLV-------GGEQKDGDGLVMKKLSLVRGNQLEATKCSLDKVTSVHIYSIHKC-----LLKDSNALYTVDYDITKEHLHQSNKFGA 132          
BLAST of mRNA_H-paniculata_contig6686.14575.1 vs. uniprot
Match: A0A0B6ZKT8_9EUPU (DNA polymerase delta subunit 3 (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZKT8_9EUPU)

HSP 1 Score: 79.3 bits (194), Expect = 1.890e-13
Identity = 54/151 (35.76%), Postives = 84/151 (55.63%), Query Frame = 0
Query:   17 EDLEGWVLDERKVVTFRWLALVLSVTANAAKKMLYDFCQHQ----GADKISATYLVVGRTGSTGGKGQVSDATVEVRLVPFEALESTKKSLARVTSVHVYSVQAAPSTTTTVDVGAQLWATDSEHSREMLDQSTEAGASLRSHRLSGVRCA 163
            E+++ +V DE K+VT +WL+L+L++  NAAKK LY F +H      +++I+ TY V G + S  G     D   +  +VP   L++ KKSL+ VTS H+YSVQAA      +     L+ TD +  +E LD  +         R S ++C+
Sbjct:   14 ENIDEYVNDENKIVTSKWLSLMLNLNINAAKKALYSFVEHHRKKTDSNEINLTYFVAGLSTSKSG-----DLEHKCVVVPESQLDAVKKSLSVVTSCHLYSVQAAK-----LKDYIPLYQTDYDVIKENLDHCS---------RFSSIKCS 145          
BLAST of mRNA_H-paniculata_contig6686.14575.1 vs. uniprot
Match: A0A2P2I6W8_9CRUS (DNA polymerase delta subunit 3 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2I6W8_9CRUS)

HSP 1 Score: 77.8 bits (190), Expect = 4.850e-13
Identity = 47/135 (34.81%), Postives = 75/135 (55.56%), Query Frame = 0
Query:   15 YHEDLEGWVLDERKVVTFRWLALVLSVTANAAKKMLYDFCQHQGADKISATYLVVGRTGSTGGKGQVSDATVEVRLVPFEALESTKKSLARVTSVHVYSVQAAPSTTTTVDVGAQLWATDSEHSREMLDQSTEAG 149
            Y ++LE ++ DE +VVT++WL++ L +  N AK++LY +   +  D +  TYLV+G + +  G  Q      ++ + P   LE+ KK L  V  VHVYS+    S +   D  A L+  D + +RE L  +TE G
Sbjct:   95 YMDNLEEYINDENRVVTYKWLSITLQIPCNTAKRLLYHYLSTKNEDDLHITYLVMGTSTTPDGIKQA-----QIHVAPSLELEAVKKLLDAVECVHVYSL----SKSKLKDQTAALYTADYDCTRENLATATEYG 220          
BLAST of mRNA_H-paniculata_contig6686.14575.1 vs. uniprot
Match: UPI001457F866 (DNA polymerase delta subunit 3-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001457F866)

HSP 1 Score: 77.8 bits (190), Expect = 5.870e-13
Identity = 49/111 (44.14%), Postives = 62/111 (55.86%), Query Frame = 0
Query:   11 TQVQYHEDLEGWVLDERKVVTFRWLALVLSVTANAAKKMLYDFCQHQ----GADKISATYLVVGRTGSTGGKGQVSDATVEVRLVPFEALESTKKSLARVTSVHVYSVQAA 117
            T   Y E+LE +V DE K+VT+RW +  L V  N AK+MLY F Q Q      D +S TY V G T    G       TV+  +V  E LE+ + +LA VTS H+YSVQ A
Sbjct:    3 TDALYLENLEEYVNDENKIVTYRWFSTNLKVHVNQAKQMLYAFVQDQRNNHDNDSLSVTYFVAGLTKPVDGH-----QTVKCTVVKEEDLEAYRSTLAVVTSSHIYSVQKA 108          
BLAST of mRNA_H-paniculata_contig6686.14575.1 vs. uniprot
Match: A0A1S3HVN9_LINUN (DNA polymerase delta subunit 3 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HVN9_LINUN)

HSP 1 Score: 77.8 bits (190), Expect = 6.170e-13
Identity = 48/105 (45.71%), Postives = 64/105 (60.95%), Query Frame = 0
Query:   15 YHEDLEGWVLDERKVVTFRWLALVLSVTANAAKKMLYDFCQHQ----GADKISATYLVVGRTGSTGGKGQVSDATVEVRLVPFEALESTKKSLARVTSVHVYSVQ 115
            Y E+L+ +V DE KVVT++WL+  LSV  N AK+MLY F Q Q      DK+S  Y + G   +  G G++  A V    VP E+L++ K +L  VTS HVYSVQ
Sbjct:    7 YLENLDEFVNDENKVVTYKWLSRTLSVHVNQAKQMLYTFVQQQRNKKDNDKLSVCYFLSGMAETPDG-GKILKAMV----VPEESLDTMKSTLTTVTSCHVYSVQ 106          
BLAST of mRNA_H-paniculata_contig6686.14575.1 vs. uniprot
Match: A0A8B8EMJ2_CRAVI (DNA polymerase delta subunit 3 n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8EMJ2_CRAVI)

HSP 1 Score: 77.4 bits (189), Expect = 7.770e-13
Identity = 49/107 (45.79%), Postives = 61/107 (57.01%), Query Frame = 0
Query:   11 TQVQYHEDLEGWVLDERKVVTFRWLALVLSVTANAAKKMLYDFCQHQGADKIS--ATYLVVGRTGSTGGKGQVSDATVEVRLVPFEALESTKKSLARVTSVHVYSVQ 115
            T   Y E+LE +V DE K+VT++WL+L L V  N AK+MLY F + Q   KI+  ATY V G + S  G       T    ++P E LE  K SL  V  VHVYSVQ
Sbjct:    3 TDPMYLENLEEYVNDEGKIVTYKWLSLNLHVHVNEAKQMLYTFLEQQKKKKINLTATYFVSGLSKSVNGC-----QTYTCAVIPEEDLEVYKNSLTSVNCVHVYSVQ 104          
BLAST of mRNA_H-paniculata_contig6686.14575.1 vs. uniprot
Match: UPI001B88DBF9 (DNA polymerase delta subunit 3-like isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88DBF9)

HSP 1 Score: 77.4 bits (189), Expect = 8.280e-13
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 0
Query:   15 YHEDLEGWVLDERKVVTFRWLALVLSVTANAAKKMLYDFCQHQ---GADKISATYLVVGRTGSTGGKGQVSDATVEVRLVPFEALESTKKSLARVTSVHVYSV 114
            Y ++L+ +V DE +VVT++WL+ VL+V  N AK+ML+ FC+ Q     D IS TY V G T +    G  S    +  +V  E LES K SLA V  VH+YS+
Sbjct:    7 YLDNLDEFVNDENRVVTYKWLSRVLTVHVNEAKRMLFAFCEQQRNKDHDDISVTYFVAGSTAA----GMHSPQEYKCAVVSEEQLESYKASLAVVNCVHIYSI 105          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6686.14575.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT01_ECTSI7.570e-6765.77DNA polymerase delta subunit 3 n=1 Tax=Ectocarpus ... [more]
UPI00148A5E771.350e-1448.62DNA polymerase delta subunit 3 isoform X1 n=3 Tax=... [more]
A0A210R1H9_MIZYE3.230e-1441.32DNA polymerase delta subunit 3 n=4 Tax=Mizuhopecte... [more]
UPI0001CB96C31.050e-1338.41DNA polymerase delta subunit 3-like n=1 Tax=Saccog... [more]
A0A0B6ZKT8_9EUPU1.890e-1335.76DNA polymerase delta subunit 3 (Fragment) n=1 Tax=... [more]
A0A2P2I6W8_9CRUS4.850e-1334.81DNA polymerase delta subunit 3 (Fragment) n=1 Tax=... [more]
UPI001457F8665.870e-1344.14DNA polymerase delta subunit 3-like n=1 Tax=Pecten... [more]
A0A1S3HVN9_LINUN6.170e-1345.71DNA polymerase delta subunit 3 n=1 Tax=Lingula ung... [more]
A0A8B8EMJ2_CRAVI7.770e-1345.79DNA polymerase delta subunit 3 n=1 Tax=Crassostrea... [more]
UPI001B88DBF98.280e-1343.69DNA polymerase delta subunit 3-like isoform X1 n=2... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041913DNA polymerase delta subunit 3 superfamilyGENE3D1.10.10.1300coord: 11..167
e-value: 2.6E-30
score: 107.4
IPR019038DNA polymerase delta subunit 3PFAMPF09507CDC27coord: 28..181
e-value: 1.4E-25
score: 90.6
IPR019038DNA polymerase delta subunit 3PANTHERPTHR17598FAMILY NOT NAMEDcoord: 12..189

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6686contigH-paniculata_contig6686:3752..9181 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6686.14575.1mRNA_H-paniculata_contig6686.14575.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6686 3729..9181 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6686.14575.1 ID=prot_H-paniculata_contig6686.14575.1|Name=mRNA_H-paniculata_contig6686.14575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=234bp
MMVDGSSEGGTQVQYHEDLEGWVLDERKVVTFRWLALVLSVTANAAKKML
YDFCQHQGADKISATYLVVGRTGSTGGKGQVSDATVEVRLVPFEALESTK
KSLARVTSVHVYSVQAAPSTTTTVDVGAQLWATDSEHSREMLDQSTEAGA
SLRSHRLSGVRCASVDDVPPPSAPTPPAQVNEESPFALRRGGGTAGAAAN
GGPKSKAGGGGAPEKLKGKAIDPKDFFSGAAGRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041913POLD3_sf
IPR019038POLD3