prot_H-paniculata_contig6554.14412.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig6554.14412.1
Unique Name	prot_H-paniculata_contig6554.14412.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	221

Homology

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BLAST of mRNA_H-paniculata_contig6554.14412.1 vs. uniprot
Match: D7FIR0_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIR0_ECTSI)

HSP 1 Score: 338 bits (868), Expect = 5.250e-116
Identity = 167/222 (75.23%), Postives = 190/222 (85.59%), Query Frame = 0

Query:    1 MKTACAMTV---AXXXXXXXXXXXXXXXXXXXXXSKPASSSMRMSFESEIGAQAPIGYWDPLGLLSREPTQERFDRLRYVEIKHGRIAMLAVLGHITAQNFRFPGMLSPSAGLSFADCPNGVAALSKIPLYGLIQIFLFIGFLETQVMYQKEGSFPGDMSMINPFEKDWDAFSDEEKDVKRAIELNNGRAAQMGILGLMVHEQMDNHPYIINEILGSHVSFN 219
            MKTACAM     A                     +KPASSSM+MSFE+EIGAQAPIGYWDPLGLL+++P+QERFDRLRYVEIKHGRIAMLA+LGHITAQNFRFPGML+PSA LSFADCPNG+AA+SKIPLYGLIQIFLFIGFLET+VM QKEGSFPGDMS+INPFEK+W+++++EE+  KRAIELNNGRAAQMGILGLMVHEQ++N PY+INEILGSHV FN
Sbjct:    1 MKTACAMAAGVAACAATASAFVAPSAFKGASLTAAKPASSSMKMSFETEIGAQAPIGYWDPLGLLTKDPSQERFDRLRYVEIKHGRIAMLAILGHITAQNFRFPGMLAPSADLSFADCPNGLAAISKIPLYGLIQIFLFIGFLETKVMLQKEGSFPGDMSLINPFEKEWESWTEEEQATKRAIELNNGRAAQMGILGLMVHEQINNTPYVINEILGSHVQFN 222

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BLAST of mRNA_H-paniculata_contig6554.14412.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 4.060e-84
Identity = 129/186 (69.35%), Postives = 152/186 (81.72%), Query Frame = 0

Query:   35 ASSSMRMSFESEIGAQAPIGYWDPLGLLSREPTQERFDRLRYVEIKHGRIAMLAVLGHITAQNFRFPGMLSPSAGLSFADCPNGVAALSKIPLYGLIQIFLFIGFLETQVMYQKEGSFPGDMSMI-NPFEKDWDAFSDEEKDVKRAIELNNGRAAQMGILGLMVHEQMDNHPYIINEILGSHVSFN 219
            +SS+M+MSFESEIGAQ P+G+WDPLGLL+ +  QERF+RLRYVE+KHGRIAMLA+ GH+T QN R PGMLS SA LSFAD PNGVAALSKIP  GL QIF F+GFLE  VM   EGSFPGD +   NPF   WDA S+E ++ KRAIELNNGRAAQMGIL LMVHE+++N PYIIN++LG+  +FN
Sbjct:   34 SSSAMKMSFESEIGAQPPLGFWDPLGLLA-DADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218

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BLAST of mRNA_H-paniculata_contig6554.14412.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 257 bits (656), Expect = 7.910e-84
Identity = 130/189 (68.78%), Postives = 153/189 (80.95%), Query Frame = 0

Query:   32 SKPASSSMRMSFESEIGAQAPIGYWDPLGLLSREPTQERFDRLRYVEIKHGRIAMLAVLGHITAQNFRFPGMLSPSAGLSFADCPNGVAALSKIPLYGLIQIFLFIGFLETQVMYQKEGSFPGDMSMI-NPFEKDWDAFSDEEKDVKRAIELNNGRAAQMGILGLMVHEQMDNHPYIINEILGSHVSFN 219
            S  A S+M+MSFESEIGAQAP+G+WDPLGLL+ +  QERF+RLRYVE+KHGRIAMLA+ GH+T QN R PGMLS SA LSFAD PNGVAALSKIP  GL QIF FIGFLE  VM   EGSFPGD ++  NPF   WDA S+E +  KRAIELNNGRAAQMGIL LMVHE+++N PY+IN+++G+  +FN
Sbjct:   30 SAKACSAMKMSFESEIGAQAPLGFWDPLGLLA-DADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217

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BLAST of mRNA_H-paniculata_contig6554.14412.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 3.670e-83
Identity = 129/189 (68.25%), Postives = 152/189 (80.42%), Query Frame = 0

Query:   32 SKPASSSMRMSFESEIGAQAPIGYWDPLGLLSREPTQERFDRLRYVEIKHGRIAMLAVLGHITAQNFRFPGMLSPSAGLSFADCPNGVAALSKIPLYGLIQIFLFIGFLETQVMYQKEGSFPGDMSMI-NPFEKDWDAFSDEEKDVKRAIELNNGRAAQMGILGLMVHEQMDNHPYIINEILGSHVSFN 219
            S  +SS+M+MSFESEIGAQ P+G+WDPLGLL+ +  QERF+RLRYVE+KHGRIAMLA+ GH+T QN R PGMLS SA LSFAD PNGVAALSKIP  GL QIF F+GFLE  VM   EGSFPGD +   NPF   WDA S+E +  KRAIELNNGRAAQMGIL LMVHE+++N PY+IN++LG+  +FN
Sbjct:   34 SAKSSSAMKMSFESEIGAQPPLGFWDPLGLLA-DADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221

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BLAST of mRNA_H-paniculata_contig6554.14412.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 253 bits (647), Expect = 5.700e-83
Identity = 127/183 (69.40%), Postives = 150/183 (81.97%), Query Frame = 0

Query:   38 SMRMSFESEIGAQAPIGYWDPLGLLSREPTQERFDRLRYVEIKHGRIAMLAVLGHITAQNFRFPGMLSPSAGLSFADCPNGVAALSKIPLYGLIQIFLFIGFLETQVMYQKEGSFPGDMSMI-NPFEKDWDAFSDEEKDVKRAIELNNGRAAQMGILGLMVHEQMDNHPYIINEILGSHVSFN 219
            +M+MSFE EIGAQAP+G+WDPLGLL+ +  QERF+RLRYVE+KHGRIAMLA+ GH+T QN R PGMLS SA LSFAD PNGVAALSKIP  GL QIF FIGFLE  VM   EGSFPGD ++  NPF   WDA S+E ++ KRAIELNNGRAAQMGIL LMVHE+++N PY+IN++LG+  +FN
Sbjct:    1 AMKMSFELEIGAQAPLGFWDPLGLLA-DADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182

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BLAST of mRNA_H-paniculata_contig6554.14412.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 254 bits (649), Expect = 7.500e-83
Identity = 129/186 (69.35%), Postives = 150/186 (80.65%), Query Frame = 0

Query:   35 ASSSMRMSFESEIGAQAPIGYWDPLGLLSREPTQERFDRLRYVEIKHGRIAMLAVLGHITAQNFRFPGMLSPSAGLSFADCPNGVAALSKIPLYGLIQIFLFIGFLETQVMYQKEGSFPGDMSMI-NPFEKDWDAFSDEEKDVKRAIELNNGRAAQMGILGLMVHEQMDNHPYIINEILGSHVSFN 219
            +SS+M+MSFESEIGAQAP+G+WDPLGLL+ +  QERF+RLRYVE+KHGRIAMLA+ GH+T QN R PGMLS SA LSFAD PNGVAALSKIP  GL QIF FIGFLE  VM   EGSFPGD  +  NPF   WD+ S E +  KRAIELNNGRAAQMGILG+MVHE++ N PYI N++LG+  +FN
Sbjct:   27 SSSAMKMSFESEIGAQAPLGFWDPLGLLA-DADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211

[Close]

BLAST of mRNA_H-paniculata_contig6554.14412.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 1.570e-82
Identity = 127/182 (69.78%), Postives = 147/182 (80.77%), Query Frame = 0

Query:   39 MRMSFESEIGAQAPIGYWDPLGLLSREPTQERFDRLRYVEIKHGRIAMLAVLGHITAQNFRFPGMLSPSAGLSFADCPNGVAALSKIPLYGLIQIFLFIGFLETQVMYQKEGSFPGDMSMI-NPFEKDWDAFSDEEKDVKRAIELNNGRAAQMGILGLMVHEQMDNHPYIINEILGSHVSFN 219
            M+MSFESEIGAQ P+G+WDPLGLL  +  QERF+RLRYVE+KHGRIAMLA+ GH+T QN R PGMLS SA LSFAD PNGVAALSKIP  GL QIF FIGFLE  VM   EGSFPGD ++  NPF   WDA S+E +  KRAIELNNGRAAQMGIL LMVHE+++N PY+IN++LG+  +FN
Sbjct:    1 MKMSFESEIGAQPPLGFWDPLGLLE-DADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181

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BLAST of mRNA_H-paniculata_contig6554.14412.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 2.540e-81
Identity = 129/186 (69.35%), Postives = 151/186 (81.18%), Query Frame = 0

Query:   35 ASSSMRMSFESEIGAQAPIGYWDPLGLLSREPTQERFDRLRYVEIKHGRIAMLAVLGHITAQNFRFPGMLSPSAGLSFADCPNGVAALSKIPLYGLIQIFLFIGFLETQVMYQKEGSFPGDMSMI-NPFEKDWDAFSDEEKDVKRAIELNNGRAAQMGILGLMVHEQMDNHPYIINEILGSHVSFN 219
            +SS+M+MSFESEIGAQ P+G+WDPLGLL  +  QERF+RLRYVE+KHGRIAMLA+ GH+T QN R PGMLS SA LSFAD PNGVAALSKIP  GL QIF FIGFLE  VM   EGSFPGD ++  NPF   WDA S+E +  KRAIELNNGRAAQMGIL LMVHE+++N PY+IN++LG+  +FN
Sbjct:  193 SSSAMKMSFESEIGAQPPLGFWDPLGLLE-DADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377

[Close]

BLAST of mRNA_H-paniculata_contig6554.14412.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 248 bits (634), Expect = 1.680e-80
Identity = 128/189 (67.72%), Postives = 150/189 (79.37%), Query Frame = 0

Query:   32 SKPASSSMRMSFESEIGAQAPIGYWDPLGLLSREPTQERFDRLRYVEIKHGRIAMLAVLGHITAQNFRFPGMLSPSAGLSFADCPNGVAALSKIPLYGLIQIFLFIGFLETQVMYQKEGSFPGDMSMI-NPFEKDWDAFSDEEKDVKRAIELNNGRAAQMGILGLMVHEQMDNHPYIINEILGSHVSFN 219
            S  +SS+M+MSFESEIGAQAP+G+WDPLGLL  +  Q+ F+RLRYVE+K GRIAMLA+ GH+T QN R PGMLS SA LSFAD PNGVAALSKIP  GL QIF FIGFLE  VM   EGSFPGD ++  NPF   WDA S E +  KRAIELNNGRAAQMGIL LMVHE+++N PY+IN++LG+  +FN
Sbjct:   29 SAKSSSAMKMSFESEIGAQAPLGFWDPLGLLE-DADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216

[Close]

BLAST of mRNA_H-paniculata_contig6554.14412.1 vs. uniprot
Match: Q9FEP5_SACLA (Light harvesting protein lhcf3 (Fragment) n=1 Tax=Saccharina latissima TaxID=309358 RepID=Q9FEP5_SACLA)

HSP 1 Score: 245 bits (626), Expect = 1.470e-79
Identity = 122/178 (68.54%), Postives = 141/178 (79.21%), Query Frame = 0

Query:   36 SSSMRMSFESEIGAQAPIGYWDPLGLLSREPTQERFDRLRYVEIKHGRIAMLAVLGHITAQNFRFPGMLSPSAGLSFADCPNGVAALSKIPLYGLIQIFLFIGFLETQVMYQKEGSFPGDMSMINPFEKDWDAFSDEEKDVKRAIELNNGRAAQMGILGLMVHEQMDNHPYIINEILG 213
            SS+M+MSFE+E+G QAP+GYWDPL  L     QERFDRLRYVEIKHGRI MLA+LGHI  +N R PGMLS S   SFAD PNG+ ALSK+   G+ QI +FIGFLE  VM QKEGSFPGDMS +NPFEK WD+F +E K  KRAIELNNGRAAQMGI GL+VHE ++N PY+IN +LG
Sbjct:   14 SSAMKMSFENELGVQAPLGYWDPLYWLENAD-QERFDRLRYVEIKHGRICMLAILGHIVQENVRLPGMLSFSNDQSFADMPNGLGALSKMGPIGVAQIVIFIGFLEVFVMKQKEGSFPGDMSRVNPFEKQWDSFDEETKLRKRAIELNNGRAAQMGIFGLIVHEVINNQPYVINNLLG 190

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig6554.14412.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig6554.14412.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FIR0_ECTSI	5.250e-116	75.23	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A6H5KCX6_9PHAE	4.060e-84	69.35	LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI...	[more]
FCPB_MACPY	7.910e-84	68.78	Fucoxanthin-chlorophyll a-c binding protein B, chl...	[more]
A0A6H5JHT6_9PHAE	3.670e-83	68.25	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
FCPD_MACPY	5.700e-83	69.40	Fucoxanthin-chlorophyll a-c binding protein D, chl...	[more]
FCPF_MACPY	7.500e-83	69.35	Fucoxanthin-chlorophyll a-c binding protein F, chl...	[more]
A0A6H5JDS8_9PHAE	1.570e-82	69.78	LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D8LNK6_ECTSI	2.540e-81	69.35	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
FCPC_MACPY	1.680e-80	67.72	Fucoxanthin-chlorophyll a-c binding protein C, chl...	[more]
Q9FEP5_SACLA	1.470e-79	68.54	Light harvesting protein lhcf3 (Fragment) n=1 Tax=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 47..199 e-value: 2.3E-31 score: 109.5
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 44..217 e-value: 3.6E-25 score: 90.8
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 7..203
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 7..203
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..30
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 13..30
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..12
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 31..220
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..17 score: 0.454
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 35..209
None	No IPR available	TMHMM	TMhelix		coord: 118..140
None	No IPR available	TMHMM	TMhelix		coord: 9..31

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig6554	contig	H-paniculata_contig6554:6999..10972 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig6554.14412.1	mRNA_H-paniculata_contig6554.14412.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig6554 6825..11734 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig6554.14412.1 ID=prot_H-paniculata_contig6554.14412.1|Name=mRNA_H-paniculata_contig6554.14412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=221bp
MKTACAMTVACAAGASAFVAPSAFSGAALTASKPASSSMRMSFESEIGAQ
APIGYWDPLGLLSREPTQERFDRLRYVEIKHGRIAMLAVLGHITAQNFRF
PGMLSPSAGLSFADCPNGVAALSKIPLYGLIQIFLFIGFLETQVMYQKEG
SFPGDMSMINPFEKDWDAFSDEEKDVKRAIELNNGRAAQMGILGLMVHEQ
MDNHPYIINEILGSHVSFNV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln