prot_H-paniculata_contig55778.13086.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig55778.13086.1
Unique Name	prot_H-paniculata_contig55778.13086.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	182

Homology

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BLAST of mRNA_H-paniculata_contig55778.13086.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 337 bits (864), Expect = 3.750e-116
Identity = 167/181 (92.27%), Postives = 177/181 (97.79%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSAGISFADMPNGVAALSKIPPAGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 181
            MKM+FESEIGAQ PLGF+DPLG+LADADQERF+RLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSA +SFADMPNGVAALSKIPPAGLAQI AFIGFLELAVMKNVEGSFPGDFTLGGN FG+SWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDLVGASYTFN
Sbjct:   37 MKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217

[Close]

BLAST of mRNA_H-paniculata_contig55778.13086.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 335 bits (858), Expect = 8.720e-116
Identity = 165/181 (91.16%), Postives = 175/181 (96.69%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSAGISFADMPNGVAALSKIPPAGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 181
            MKM+FESEIGAQPPLGF+DPLG+L DADQERF+RLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSA +SFADMPNGVAALSKIPPAGLAQI AFIGFLELAVMKNVEGSFPGDFTLGGN FGSSWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA Y FN
Sbjct:    1 MKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181

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BLAST of mRNA_H-paniculata_contig55778.13086.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 331 bits (849), Expect = 7.500e-114
Identity = 164/181 (90.61%), Postives = 174/181 (96.13%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSAGISFADMPNGVAALSKIPPAGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 181
            MKM+FESEIGAQPPLGF+DPLG+LADADQERF+RLRYVEVKHGRIAMLAIAGHLTQQN RLPGMLSNSA +SFADMPNGVAALSKIPPAGLAQI AF+GFLELAVMKNVEGSFPGDFT GGN F SSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PYIINDL+GASYTFN
Sbjct:   38 MKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218

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BLAST of mRNA_H-paniculata_contig55778.13086.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 331 bits (848), Expect = 1.180e-113
Identity = 163/181 (90.06%), Postives = 174/181 (96.13%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSAGISFADMPNGVAALSKIPPAGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 181
            MKM+FESEIGAQPPLGF+DPLG+LADADQERF+RLRYVEVKHGRIAMLAIAGHLTQQN RLPGMLSNSA +SFADMPNGVAALSKIPPAGLAQI AF+GFLELAVMKNVEGSFPGDFT GGN F SSWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA YTFN
Sbjct:   41 MKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221

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BLAST of mRNA_H-paniculata_contig55778.13086.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 337 bits (863), Expect = 1.230e-113
Identity = 166/181 (91.71%), Postives = 176/181 (97.24%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSAGISFADMPNGVAALSKIPPAGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 181
            MKM+FESEIGAQPPLGF+DPLG+L DADQERF+RLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSA +SFADMPNGVAALSKIPPAGLAQI AFIGFLELAVMKNVEGSFPGDFTLGGN FGSSWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA YTFN
Sbjct:  197 MKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377

[Close]

BLAST of mRNA_H-paniculata_contig55778.13086.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 326 bits (836), Expect = 5.620e-112
Identity = 162/181 (89.50%), Postives = 170/181 (93.92%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSAGISFADMPNGVAALSKIPPAGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 181
            MKM+FESEIGAQ PLGF+DPLG+LADADQERF+RLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSA +SFADMPNGVAALSKIPP GLAQI  FIGFLELAVMKNVEGSFPGDF +GGN F SSWD+MS ETQASKRAIELNNGRAAQMGIL MMVHEELSNQPYI NDL+GASYTFN
Sbjct:   31 MKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211

[Close]

BLAST of mRNA_H-paniculata_contig55778.13086.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 323 bits (829), Expect = 2.380e-111
Identity = 160/181 (88.40%), Postives = 170/181 (93.92%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSAGISFADMPNGVAALSKIPPAGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 181
            MKM+FE EIGAQ PLGF+DPLG+LADADQERF+RLRYVEVKHGRIAMLAIAGHLTQQN RLPGMLSNSA +SFADMPNGVAALSKIPP GLAQI  FIGFLELAVMKNVEGSFPGDFTLGGN F SSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY FN
Sbjct:    2 MKMSFELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182

[Close]

BLAST of mRNA_H-paniculata_contig55778.13086.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 316 bits (809), Expect = 8.680e-108
Identity = 157/181 (86.74%), Postives = 168/181 (92.82%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSAGISFADMPNGVAALSKIPPAGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 181
            MKM+FESEIGAQ PLGF+DPLG+L DADQ+ F+RLRYVEVK GRIAMLAIAGHLTQQN RLPGMLSNSA +SFADMPNGVAALSKIPP GLAQI  FIGFLELAVMKNVEGSFPGDFTLGGN F SSWDAMS ETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY FN
Sbjct:   36 MKMSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216

[Close]

BLAST of mRNA_H-paniculata_contig55778.13086.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY)

HSP 1 Score: 291 bits (746), Expect = 2.980e-98
Identity = 143/181 (79.01%), Postives = 158/181 (87.29%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSAGISFADMPNGVAALSKIPPAGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 181
            MKM+FESEIGAQPP+GF+DPLG++ADADQERFDRLRYVE+KHGRIAMLA+ GH+TQQNTRLPGMLS    ++FAD PNGVAA SKIPP G  QI+  IG  EL V+K VEGSFPGD T GGN F S+WD MSEETQASKRAIELNNGRAAQMGILAMMVHE+LSNQPYIINDL GA+Y FN
Sbjct:   32 MKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYQFN 212

[Close]

BLAST of mRNA_H-paniculata_contig55778.13086.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 290 bits (743), Expect = 6.940e-98
Identity = 148/206 (71.84%), Postives = 162/206 (78.64%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFFDPLGMLADA-------------------------DQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSAGISFADMPNGVAALSKIPPAGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 181
            MKM+FESE+GAQPPLGFFDPLG+L D                          DQERFDRLRYVEVKHGRI+MLA+AGHL  QN R PG LS  A ++FADMPNGVAA+SKIPP GLAQIVAFIGFLEL VMKNVEGSFPGD T+GGN F + WDAMSEET+ SKRAIELNNGRAAQMGILAMM+HEE+SNQPYIINDL+ A YTFN
Sbjct:    1 MKMSFESELGAQPPLGFFDPLGLLIDQVVPQLPPSCQSSLLVICADGLEPWEDQERFDRLRYVEVKHGRISMLAVAGHLVAQNYRFPGYLSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig55778.13086.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig55778.13086.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
FCPB_MACPY	3.750e-116	92.27	Fucoxanthin-chlorophyll a-c binding protein B, chl...	[more]
A0A6H5JDS8_9PHAE	8.720e-116	91.16	LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KCX6_9PHAE	7.500e-114	90.61	LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI...	[more]
A0A6H5JHT6_9PHAE	1.180e-113	90.06	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LNK6_ECTSI	1.230e-113	91.71	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
FCPF_MACPY	5.620e-112	89.50	Fucoxanthin-chlorophyll a-c binding protein F, chl...	[more]
FCPD_MACPY	2.380e-111	88.40	Fucoxanthin-chlorophyll a-c binding protein D, chl...	[more]
FCPC_MACPY	8.680e-108	86.74	Fucoxanthin-chlorophyll a-c binding protein C, chl...	[more]
FCPE_MACPY	2.980e-98	79.01	Fucoxanthin-chlorophyll a-c binding protein E, chl...	[more]
A0A6H5KBS3_9PHAE	6.940e-98	71.84	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 9..161 e-value: 2.9E-32 score: 112.4
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 7..177 e-value: 9.1E-25 score: 89.5
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 2..165
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 2..165
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 2..171

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig55778	contig	H-paniculata_contig55778:200..745 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig55778.13086.1	mRNA_H-paniculata_contig55778.13086.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig55778 149..959 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig55778.13086.1 ID=prot_H-paniculata_contig55778.13086.1|Name=mRNA_H-paniculata_contig55778.13086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=182bp
MKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAI
AGHLTQQNTRLPGMLSNSAGISFADMPNGVAALSKIPPAGLAQIVAFIGF
LELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAA
QMGILAMMVHEELSNQPYIINDLVGASYTFN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln