prot_H-paniculata_contig5535.13018.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5535.13018.1
Unique Nameprot_H-paniculata_contig5535.13018.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length677
Homology
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BLAST of mRNA_H-paniculata_contig5535.13018.1 vs. uniprot
Match: A0A6H5JTI3_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI3_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.980e-15
Identity = 74/182 (40.66%), Postives = 96/182 (52.75%), Query Frame = 0 
Query:  494 VLRQAETGKGAKLDPGSLGTAVEMCCHAGEIGHAQTIMAQLKSLAGSENADRWIVKTTASTDAYLGNAEAVSEPGAQQTDTYPGGDYVA--RHDVSCEGDTAGMHHNGAGQSQHETHSPGEPGDSRRGGPTTPVNGVSFSGEVHQIRRVGGLVGRGSKSEEAVRRRNADQEADCLVKLSHGG 673
            VLRQ++  K +K DP SLG AVEMCC AG++ HA+ I+  L +LAG+E AD WI +T    +A +G+ EA  EP     +    GD +     D      T  ++ + A   +      G P  S+  GPT     V F  EVHQ+  +GG VG   K  EA RR   D   D LVKLSHGG
Sbjct:  656 VLRQSQQVKPSKPDPCSLGAAVEMCCRAGKLDHARAILPHLTALAGNEGADAWIRETMGIFNACIGDLEARDEPPINGNE----GDELRPPASDDKTIAITGDLNTHAASGEETNQQRRGRPKLSK--GPTE--RAVPFK-EVHQLHPLGGAVG--GKVGEA-RRLATDHAPDVLVKLSHGG 825
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5535.13018.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JTI3_9PHAE1.980e-1540.66PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 191..219
e-value: 8.5E-5
score: 22.6
coord: 298..327
e-value: 0.0056
score: 16.9
coord: 336..362
e-value: 0.35
score: 11.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 298..331
e-value: 4.4E-4
score: 18.3
coord: 228..262
e-value: 2.8E-9
score: 34.6
coord: 191..219
e-value: 9.5E-6
score: 23.5
coord: 74..107
e-value: 4.3E-7
score: 27.7
coord: 39..72
e-value: 4.2E-7
score: 27.7
coord: 111..138
e-value: 1.6E-4
score: 19.6
coord: 439..470
e-value: 2.6E-6
score: 25.2
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 225..272
e-value: 1.8E-8
score: 34.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 226..260
score: 12.781
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 436..470
score: 10.622
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 37..71
score: 11.29
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 2..36
score: 9.723
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 507..537
score: 5.601
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 146..176
score: 7.509
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 107..141
score: 10.49
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 189..223
score: 10.326
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 331..365
score: 8.309
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 296..330
score: 10.402
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 366..400
score: 9.284
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 261..295
score: 8.868
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 401..435
score: 8.473
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 72..106
score: 11.63
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 43..175
e-value: 1.7E-11
score: 43.9
coord: 382..497
e-value: 1.8E-8
score: 34.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 143..219
e-value: 3.1E-12
score: 48.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..142
e-value: 4.4E-41
score: 143.2
coord: 348..573
e-value: 6.8E-35
score: 122.9
coord: 220..327
e-value: 9.7E-28
score: 99.4
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 142..366
coord: 330..538
coord: 2..172

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5535contigH-paniculata_contig5535:3135..12016 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5535.13018.1mRNA_H-paniculata_contig5535.13018.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5535 3107..12990 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5535.13018.1 ID=prot_H-paniculata_contig5535.13018.1|Name=mRNA_H-paniculata_contig5535.13018.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=677bp
MSVMVYNKAIIAIAKSGRWQEATNLLEWMRRGALAPDVYSYTGCIDACAK
KGQWIKAIRLLDEMREVGVKANTYAYNAAINACAKAKIWQEALALLRQMK
REGVQINTATLNASIDACGNAGEWEKALRILERMRAKELPLHQRPNLRTL
NSAINACAQAAEWKSAISLLDQLRSGRGDEHGPVVLEADIVSYNAAMNGL
AKAGEWKKALALLREVVEDREKLKPDAISYNTAIHACGRVGEWELAKSLL
QEMRDLGLEPDVISFGTTANALGRAGQWGLLLNLMKEMSMAGHPPTEVAF
NAAIEACAKGDAWKDAVSLMEEMRLNGYVPTLLVLSSLIAACGRAETWEM
AIALLHESRRRGPHPTASVYLAAAHACAIAGKWQEGSDLLEPMKEDGIRP
NEKFYVALIRATGNGERSDVTLLLLKEMEKLGIEPGVRTWNTAVGACGKA
GCWHRGLMLLSEMHDRGMRPAGCAVASIIRACDAAGEWKKGLEVLRQAET
GKGAKLDPGSLGTAVEMCCHAGEIGHAQTIMAQLKSLAGSENADRWIVKT
TASTDAYLGNAEAVSEPGAQQTDTYPGGDYVARHDVSCEGDTAGMHHNGA
GQSQHETHSPGEPGDSRRGGPTTPVNGVSFSGEVHQIRRVGGLVGRGSKS
EEAVRRRNADQEADCLVKLSHGGTPL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long
IPR011990TPR-like_helical_dom_sf