prot_H-paniculata_contig5034.12287.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5034.12287.1
Unique Nameprot_H-paniculata_contig5034.12287.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length330
Homology
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BLAST of mRNA_H-paniculata_contig5034.12287.1 vs. uniprot
Match: A0A6H5L040_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L040_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 2.270e-41
Identity = 101/251 (40.24%), Postives = 122/251 (48.61%), Query Frame = 0 
Query:  117 RQTPCETSDDPDYPCLVSRPPGAFDNEIRIYLSSSRSEQEEDE-------DNAQQLLNVKVVVPKIAGLAEIRGLGRSGVWVSLGFSPNGKMAGPSEAVVGVVEEKKSDQGPH---------VLRYRMRGYSPSSVTPLPDCDQILTNGAVESSTNGSLVFSFSRPFSLPQPRGQGCHSLAQEEEGEENV-----------------------LAWLDPREEGVVVLWAFGSRSPWPSYHDATGAFVLPTL 328
            R+ PC  SDDP Y CLV RPPG+F +EI +YLS S S     +                                G    W SLGFSP+GKMAGPSEAVVG V   ++              VLRYRM GY  +SVTPL D  Q+LT  +VE++  GSL+  F RP       G+   +      GEE                         + WLDPRE GVV+LWA+G+ + WPSYHDATGAFVLP L
Sbjct:  125 RRPPCAESDDPAYACLVPRPPGSFADEIMLYLSLSWSSSSVGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGARWASLGFSPDGKMAGPSEAVVGFVGATEAASXXXXXXXXXAAGVLRYRMDGYRIASVTPLSDRHQVLTEQSVETTEEGSLIVRFKRPLVETFSAGRDACAATAAAVGEEGTGGLEAAVAGAVAEVCSGEAGGSSMEWLDPRERGVVLLWAYGTGA-WPSYHDATGAFVLPRL 374
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5034.12287.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L040_9PHAE2.270e-4140.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR23130FAMILY NOT NAMEDcoord: 44..318
NoneNo IPR availablePANTHERPTHR23130:SF115coord: 44..318
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 29..59
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 60..329
NoneNo IPR availableTMHMMTMhelixcoord: 28..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5034contigH-paniculata_contig5034:738..3317 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5034.12287.1mRNA_H-paniculata_contig5034.12287.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5034 376..3856 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5034.12287.1 ID=prot_H-paniculata_contig5034.12287.1|Name=mRNA_H-paniculata_contig5034.12287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=330bp
MRWFTKTPTRNRIGTTAAKMPKNTATAAAVIVAIITAIIAIASTLASLAA
TVAVFSALVEWSGLFSVTQDTATPTTTATMMEVSTSSASLSYFSSTSFSV
SAGSGPGFGSGSGSNKRQTPCETSDDPDYPCLVSRPPGAFDNEIRIYLSS
SRSEQEEDEDNAQQLLNVKVVVPKIAGLAEIRGLGRSGVWVSLGFSPNGK
MAGPSEAVVGVVEEKKSDQGPHVLRYRMRGYSPSSVTPLPDCDQILTNGA
VESSTNGSLVFSFSRPFSLPQPRGQGCHSLAQEEEGEENVLAWLDPREEG
VVVLWAFGSRSPWPSYHDATGAFVLPTLL*
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