prot_H-paniculata_contig49554.12145.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig49554.12145.1
Unique Nameprot_H-paniculata_contig49554.12145.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length187
Homology
BLAST of mRNA_H-paniculata_contig49554.12145.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 2.230e-50
Identity = 92/196 (46.94%), Postives = 124/196 (63.27%), Query Frame = 0
Query:    1 MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLSDK----------PVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWR 185
            +YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F T   GE +W+ GCA  RD+  G   +S            P R A+GS++W+S  +RPD++ AVRAVAR AH P  RHW A+ KI+ YLK T+DLG+ ++RG  L L+VYVDA YAD  + R
Sbjct:  685 IYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMGEEWPAREAIGSMVWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRR 879          
BLAST of mRNA_H-paniculata_contig49554.12145.1 vs. uniprot
Match: A0A6H5KFN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN5_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 3.860e-42
Identity = 81/185 (43.78%), Postives = 113/185 (61.08%), Query Frame = 0
Query:    1 MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDIVRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWR 185
            +YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+     +      +   +    G        R DE+  + PVR A+GS++W+S  +RPD++ AVRAVAR AH P  R+W A+ KI+ YLK T+DLG+ ++RG  L L+VYVDA YAD  + R
Sbjct:  185 IYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEECQCMVERFDVKSTSRIPATPGADLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRNWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRR 366          
BLAST of mRNA_H-paniculata_contig49554.12145.1 vs. uniprot
Match: A0A6H5K5V9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5V9_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.420e-40
Identity = 82/187 (43.85%), Postives = 112/187 (59.89%), Query Frame = 0
Query:    1 MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVF-RLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWR 185
            +YGLKQ+GR W     +  V N G  Q K+DP VF  +    VV +I+ ++VDD++V G    C+ L A+L  +F T   GE         W    R DE+      R A+GS++W+S  +RPD++ AVRAVAR AH P  RHW A+ KI+ YLK T+DLG+ ++RG  L L+VYVDA YAD  + R
Sbjct:   52 IYGLKQSGRQWGYHAADTPVEN-GFEQCKADPFVFPNMVDEVVVMIIIVIYVDDILVVGSDEDCEELLASLNKKFPTKNLGE---------WPK--REDEERXXXXXREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRR 226          
BLAST of mRNA_H-paniculata_contig49554.12145.1 vs. uniprot
Match: A0A6H5JUF5_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUF5_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 2.460e-39
Identity = 83/192 (43.23%), Postives = 114/192 (59.38%), Query Frame = 0
Query:    1 MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDI----------------VRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVD 175
            +YGLKQ+GR W   + + LV N G  Q K+DPCVFR   N VV MI  ++VDD++VAG     + L A+L  +F T   GE + + G     D+                 R DE   + PVR A+GS++W+S  +RPD++ AVRAVAR AH P  RHW A+ KI+ +LK T+DL + ++RG  L L+VYVD
Sbjct:  226 IYGLKQSGRQWGYHVADTLVEN-GFEQCKADPCVFRKMVNKVVVMISMIYVDDILVAGSDEDREELLASLNNKFPTKNLGECERFDGTVKCFDVRSTSRIPASPGVDLGSKRDDEKGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGFLKGTRDLDITYQRGSGLGLAVYVD 416          
BLAST of mRNA_H-paniculata_contig49554.12145.1 vs. uniprot
Match: A0A6H5KLY3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY3_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 3.080e-38
Identity = 79/187 (42.25%), Postives = 111/187 (59.36%), Query Frame = 0
Query:    1 MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDI--VRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWR 185
            +YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG            R + Q+T      ++      D+   R +E   + PVR A+GS++W+S  +RPD++ AV AV R AH P  RHW A+ KI+ YL  T+ LG+ ++RG  L L+VYVDA YAD  + R
Sbjct:   52 IYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGM---------VRRFDVQSTS-----HIPATPGADLGPKRDNEKGGEWPVREAIGSMVWVSTFSRPDVSFAVPAVVRHAHAPAKRHWDAIQKILGYLTGTRYLGITYQRGSGLGLAVYVDASYADTEDRR 223          
BLAST of mRNA_H-paniculata_contig49554.12145.1 vs. uniprot
Match: A0A6H5K1X1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X1_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 5.480e-38
Identity = 84/199 (42.21%), Postives = 113/199 (56.78%), Query Frame = 0
Query:    1 MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG----------------DEDLSDKPVRSAVGSLI-WLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERG--RDLNLSVYVDADYA 179
            +YGLKQA R W   L   L+  +G+ Q  +D CVFRL + G V MI+ VHVDD+  AG+  +CD     L         GEL+WY  C + RD+ RG                +E  +D P R  VGSL+ WL+  TRPDIA+AVRAVAR   +P   HW A + I+ Y++RT  +G+ FERG    +++ V+VDAD A
Sbjct:   75 LYGLKQASRHWHAHLTRCLLL-LGLLQCLADACVFRLMEEGNVVMIIVVHVDDIFAAGQKERCDKFGRDLNEMVPVKNLGELRWYSACFYERDVERGLLKISQQSVKLSDFDVNEASADVPFRELVGSLMMWLATQTRPDIANAVRAVARYCASPKMVHWTAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADNA 272          
BLAST of mRNA_H-paniculata_contig49554.12145.1 vs. uniprot
Match: A0A6H5JHS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHS1_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.420e-35
Identity = 82/194 (42.27%), Postives = 106/194 (54.64%), Query Frame = 0
Query:    1 MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDI-----VRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERG--RDLNLSVYVDADYADKSNWRR 186
            +YGL+Q  R W   L   LV  +G  Q  +D CVFRL ++G V +IL VHVDD    G+   CD   A L         G+L+ Y GC + R+      V G E  +D P R  VGSL+WL+  TRPDIA+AVRAVAR   +P   HWKA +  + Y +RT   G+  +RG      L  Y DAD+A K+  RR
Sbjct:  221 LYGLRQTSRQWHATLKRCLVE-LGFAQCMADACVFRLIEDGCVVLILVVHVDDTFAMGERESCDKFGADLNKSVPVKNLGDLRCYSGCFYERNKETEYGVVGVEVATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWKAAMDTLGYARRTSHFGISVQRGTVEGFTLEGYADADFASKAADRR 413          
BLAST of mRNA_H-paniculata_contig49554.12145.1 vs. uniprot
Match: A0A6H5KTI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI8_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 9.190e-35
Identity = 72/160 (45.00%), Postives = 101/160 (63.12%), Query Frame = 0
Query:   39 KNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQT---------TRGELKWY--LGCAFWRDI--VRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWR 185
            K+ VV MI+ ++VDD++VAG    C  L  ++   F T          R +++    +  +   DI   R DE   + PVR A+GS++W+S  +RPDI+ AVRAVAR AH P +RHWKA+VKI++YLK T+DLG+ +ERG  L L+VYVDA YAD  + R
Sbjct:    2 KDDVVVMIIVIYVDDILVAGSDDDCKELLDSINKAFPTKDLGECVIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAEDRR 161          
BLAST of mRNA_H-paniculata_contig49554.12145.1 vs. uniprot
Match: A0A6H5KQ05_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ05_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.090e-34
Identity = 78/202 (38.61%), Postives = 110/202 (54.46%), Query Frame = 0
Query:    1 MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIV----------------RGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWR 185
            +YGLKQ+GR W       LV +    Q K+DPCVFR   + VV MI+ +++DD++VAG    C+ L A+L     T   GE +W+ G     D+                 +GDE     PVR A+GS++W+S  +RPD++ AVRA            W A+ KI+ Y K T+DLG+ ++RG  L L+VYVDA YAD  + R
Sbjct:  176 IYGLKQSGRQWGYHAAGTLVES-RFEQCKADPCVFRKMVDEVVVMIIVIYLDDILVAGSDEDCEELLASLNKTNPTNSLGECEWFDGMVRRFDVQSTSRIPASPGADLGPKQGDEKGGQWPVREAIGSMMWVSTFSRPDVSFAVRA------------WDAIQKIVGYSKGTRDLGITYQRGSGLGLAVYVDASYADTEDRR 364          
BLAST of mRNA_H-paniculata_contig49554.12145.1 vs. uniprot
Match: A0A6H5L6V8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6V8_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 5.250e-33
Identity = 79/188 (42.02%), Postives = 103/188 (54.79%), Query Frame = 0
Query:    1 MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDIVRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERG--RDLNLSVYVDADYADKSNWRR 186
            +YGL+QA R W   L   LV  +G  Q  +D CVFRL ++G V +IL VHVDD+   G+  +CD L A L   +    GE           D    DE  +D P R  VGSL+WL+  TRPDIA+AVRAVAR   +P   HW A + I+ Y +RT   G+  +R      +L  Y DAD+A K+  RR
Sbjct: 1009 LYGLRQASRQWHAMLKRCLVA-LGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKLGADLNKVYGVVGGENVPMSSGVKLPDF-DADEMETDYPFRQLVGSLMWLATQTRPDIANAVRAVARYCSSPKQVHWDAAIGILGYARRTSHFGISLQRRTVEGFSLQGYADADFASKAADRR 1194          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49554.12145.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTV6_9PHAE2.230e-5046.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KFN5_9PHAE3.860e-4243.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5V9_9PHAE1.420e-4043.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUF5_9PHAE2.460e-3943.23C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KLY3_9PHAE3.080e-3842.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1X1_9PHAE5.480e-3842.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHS1_9PHAE2.420e-3542.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTI8_9PHAE9.190e-3545.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ05_9PHAE2.090e-3438.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6V8_9PHAE5.250e-3342.02Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..91
e-value: 5.7E-9
score: 36.0
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 105..179
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 105..179

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49554contigH-paniculata_contig49554:658..1332 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49554.12145.1mRNA_H-paniculata_contig49554.12145.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig49554 511..1353 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig49554.12145.1 ID=prot_H-paniculata_contig49554.12145.1|Name=mRNA_H-paniculata_contig49554.12145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=187bp
MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVH
VDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDIVRGDEDL
SDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIIS
YLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like