prot_H-paniculata_contig4744.11786.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4744.11786.1
Unique Nameprot_H-paniculata_contig4744.11786.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length158
Homology
BLAST of mRNA_H-paniculata_contig4744.11786.1 vs. uniprot
Match: A0A6H5KJZ4_9PHAE (General transcription factor IIH subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJZ4_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 2.310e-75
Identity = 120/161 (74.53%), Postives = 135/161 (83.85%), Query Frame = 0
Query:    1 ILSSGT--NANVFEILERLPADALDKLYGKGVVTAKGMTS-NHGQWTCRAILQSLPQLAKQHVMRLLFVEEYVEKGMLKSWVKKEYHRVHSTSIRRLVSLRVLLQKNDGQEYLLNPPFRESLQRALCASDKTPWQGDVPLVPDRSPPSIAKIEQKMHSQWQ 158
            +L+S T  + NVF+ LERLP DALDKLYG     A+G    +HGQWTCRA+LQSLPQLAKQHVMRLLFVE  V KGMLKSWVKKEY RVH+ S+R+LVSLRVLL   DGQEY LNPPFRE+LQRALCASDKTPWQGDVPL  DRSPP++AKIE++MHSQWQ
Sbjct:   12 LLASTTTMSLNVFDYLERLPPDALDKLYGAAPPAAQGQGGRSHGQWTCRALLQSLPQLAKQHVMRLLFVEGPVGKGMLKSWVKKEYQRVHAASVRKLVSLRVLLPSADGQEYQLNPPFRENLQRALCASDKTPWQGDVPLSADRSPPTVAKIERQMHSQWQ 172          
BLAST of mRNA_H-paniculata_contig4744.11786.1 vs. uniprot
Match: D7FHY7_ECTSI (General transcription factor IIH subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY7_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 6.460e-73
Identity = 119/161 (73.91%), Postives = 133/161 (82.61%), Query Frame = 0
Query:    1 ILSSGT--NANVFEILERLPADALDKLYGKGVVTAKGMTS-NHGQWTCRAILQSLPQLAKQHVMRLLFVEEYVEKGMLKSWVKKEYHRVHSTSIRRLVSLRVLLQKNDGQEYLLNPPFRESLQRALCASDKTPWQGDVPLVPDRSPPSIAKIEQKMHSQWQ 158
            +L+S T  + NVF+ LERLP DALDKLYG     A G    +HGQWTCRA+LQSLPQLAKQHVMRLLFVE  V KGMLKSWVKKEY RVH+ S+R+LVSLRVLL    GQEY LNPPFRE+LQRALCASDKTPWQGDVPL  DRSPP++AKIE++MHSQWQ
Sbjct:   12 LLASATTMSLNVFDYLERLPPDALDKLYGAAPPAADGQGGRSHGQWTCRALLQSLPQLAKQHVMRLLFVEGPVGKGMLKSWVKKEYQRVHAASVRKLVSLRVLLPSAGGQEYQLNPPFRENLQRALCASDKTPWQGDVPLSADRSPPTVAKIERQMHSQWQ 172          
BLAST of mRNA_H-paniculata_contig4744.11786.1 vs. uniprot
Match: A0A1V9ZYD0_9STRA (General transcription factor IIH subunit 4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYD0_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 8.130e-16
Identity = 50/149 (33.56%), Postives = 71/149 (47.65%), Query Frame = 0
Query:    9 NVFEILERLPADALDKLYGKGVVTAKGMTSNHGQWTCRAILQSLPQLAKQHVMRLLFVEEYVEKGMLKSWVKKEYHRVHSTSIRRLVSLRVLLQKNDGQEYLLNPPFRESLQRALCASDKTPWQGDVPLVPDRSPPSIAKIEQKMHSQW 157
            N FE L  LP  ++D+L+             +  W C+A+ QSLP LA+Q VMRLLF         L  WVK       + SI +L  LRVL +  +GQ   LNP F+  L+ AL +   +PW+     +    P S  ++E     +W
Sbjct:    2 NAFEYLTTLPVASVDRLF-------------NDPWACQAVFQSLPSLAQQVVMRLLFSHSPTPLSSLNEWVKPSAIETINLSIEKLCHLRVLSKSGNGQ-IQLNPNFKAQLKAALSSLGGSPWEEGRKKIKQEKPISAVQLEHYARKRW 136          
BLAST of mRNA_H-paniculata_contig4744.11786.1 vs. uniprot
Match: I0YPN8_COCSC (RNA polymerase II transcription factor B subunit 2 n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YPN8_COCSC)

HSP 1 Score: 82.8 bits (203), Expect = 1.460e-15
Identity = 54/150 (36.00%), Postives = 81/150 (54.00%), Query Frame = 0
Query:   14 LERLPADALDKLYGKGVVTAKGMTSNHGQWTCRAILQSLPQLAKQHVMRLLFVEEYVEKGMLKSWVKKEYHRVHSTSIRRLVSLRVLLQKN---DGQE--YLLNPPFRESLQRALCASDKTPWQGDVPLVPDRSPPSIAKIEQKMHSQWQ 158
            LE LPAD + KLY           S+H  W C+A+L+ L  LAKQ+V+R+LF++  V K ++ SW+ +     H+T+I RL  L++LL  N   +GQ+  Y L+P FRE L+ A+    K     +VP    +  PS   +      QW+
Sbjct:    7 LETLPADTVGKLY-----------SSH--WACQAVLRGLTSLAKQYVIRMLFLDVPVTKSVMDSWIAQSSKSKHATAINRLKGLQLLLPSNVASNGQQAAYQLHPVFREQLRWAVSTGGKVGID-EVPAGVLQQAPSREMLSSYAQQQWE 142          
BLAST of mRNA_H-paniculata_contig4744.11786.1 vs. uniprot
Match: A0A2R6WYY1_MARPO (RNA polymerase II transcription factor B subunit 2 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WYY1_MARPO)

HSP 1 Score: 82.8 bits (203), Expect = 1.500e-15
Identity = 51/153 (33.33%), Postives = 77/153 (50.33%), Query Frame = 0
Query:    9 NVFEILERLPADALDKLYGKGVVTAKGMTSNHGQWTCRAILQSLPQLAKQHVMRLLFVEEYVEKGMLKSWVKKEYHRVHSTSIRRLVSLRVLLQKNDGQE---YLLNPPFRESLQRALCASDKTPWQGDVPLVPDRSPPSIAKIEQKMHSQWQ 158
            N  E++  LPA  LD+LYG               WTC+A+++SLP LAKQ+V+RLLFVE  V    ++ W   +    H  +I +L  LRVL++  + ++   Y LNP  ++ LQ  L      P +  +P       PS+  +E     QW+
Sbjct:   10 NFMEMVAALPAAKLDELYGS-------------PWTCQAVVRSLPPLAKQYVLRLLFVEAAVSSKSIQDWALPDALNKHKVAIDKLEQLRVLIEATERRKEVSYKLNPRLQKQLQDVLKTGGGVPRES-LPASFAARVPSLVDLENYAMKQWE 148          
BLAST of mRNA_H-paniculata_contig4744.11786.1 vs. uniprot
Match: A0A061S035_9CHLO (RNA polymerase II transcription factor B subunit 2 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S035_9CHLO)

HSP 1 Score: 80.5 bits (197), Expect = 9.630e-15
Identity = 47/153 (30.72%), Postives = 77/153 (50.33%), Query Frame = 0
Query:    9 NVFEILERLPADALDKLYGKGVVTAKGMTSNHGQWTCRAILQSLPQLAKQHVMRLLFVEEYVEKGMLKSWVKKEYHRVHSTSIRRLVSLRVLLQKND---GQEYLLNPPFRESLQRALCASDKTPWQGDVPLVPDRSPPSIAKIEQKMHSQWQ 158
            N+   LE LP   L  +Y                WTC+A+L++LP +AKQ+V+R+LF+   V +  + +W +      H+ ++  +  L++L  + D   G  Y L P F+ +LQRALC        G VP    ++ PS A +E+   +QW+
Sbjct:    6 NLLNYLEELPPIKLRNIY-------------ESHWTCQAVLRALPPIAKQYVLRILFIAGSVPENTVSNWSQSAASDKHAAALDAMQRLQILQPQPDRAGGCSYALQPAFQANLQRALCLRHPG-GSGGVPAAVKQAAPSPADVEKYSSNQWE 144          
BLAST of mRNA_H-paniculata_contig4744.11786.1 vs. uniprot
Match: A0A1Y1I418_KLENI (RNA polymerase II transcription factor B subunit 2 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I418_KLENI)

HSP 1 Score: 79.7 bits (195), Expect = 1.800e-14
Identity = 53/151 (35.10%), Postives = 76/151 (50.33%), Query Frame = 0
Query:   14 LERLPADALDKLYGKGVVTAKGMTSNHGQWTCRAILQSLPQLAKQHVMRLLFVEEYVEKGMLKSWVKKEYHRVHSTSIRRLVSLRVLLQ------KNDGQEYLLNPPFRESLQRALCASDKTPWQGDVPLVPDRSPPSIAKIEQKMHSQWQ 158
            L  LP   LD+LY                +TC+A+L+SLP +AKQ+V+RLLF+E+ +    ++ W K E    H+ ++ RL  LRVLL+      K D   Y LNP F++ LQRAL  +   P     P +    P S A +      QW+
Sbjct:    7 LSELPPVKLDRLY-------------ESHFTCQAVLRSLPPIAKQYVLRLLFIEQPIAGETMRGWAKPEALGKHNAAMERLDQLRVLLETGGKSGKKDAS-YRLNPVFQQQLQRALSGAIGPPKDPLPPALASHKP-SPADLNAYALKQWE 142          
BLAST of mRNA_H-paniculata_contig4744.11786.1 vs. uniprot
Match: A0A3B4UAE7_SERDU (General transcription factor IIH subunit 4 n=7 Tax=Clupeocephala TaxID=186625 RepID=A0A3B4UAE7_SERDU)

HSP 1 Score: 77.4 bits (189), Expect = 1.190e-13
Identity = 50/153 (32.68%), Postives = 78/153 (50.98%), Query Frame = 0
Query:    9 NVFEILERLPADALDKLYGKGVVTAKGMTSNHGQWTCRAILQSLPQLAKQHVMRLLFVEEYVEKGMLKSWVKKEYHRVHSTSIRRLVSLRVL-LQKNDG--QEYLLNPPFRESLQRALCASDKTPWQGDVPLVPDRSPPSIAKIEQKMHSQWQ 158
            N+ E L  L  D LD+LY            NH   TC A+ + LP LAK +VMR+LF+++ + +  +  WVKK+ H+ H   +  L  LR+   Q+  G  Q Y+LNP F+++L+ AL    +        L PDR    I  +++    +W+
Sbjct:   11 NLHEYLRELSPDILDRLY------------NHPA-TCLAVYRELPSLAKNYVMRMLFLDQPLPQAAVALWVKKDSHKDHDECVSVLAGLRLWHSQQLQGGLQGYILNPVFKDNLRIALLGGGRAWADEGSTLGPDRHARDIESLDRYAMERWE 150          
BLAST of mRNA_H-paniculata_contig4744.11786.1 vs. uniprot
Match: A0A3B4UAI4_SERDU (General transcription factor IIH subunit 4 n=2 Tax=Seriola dumerili TaxID=41447 RepID=A0A3B4UAI4_SERDU)

HSP 1 Score: 77.4 bits (189), Expect = 1.270e-13
Identity = 50/153 (32.68%), Postives = 78/153 (50.98%), Query Frame = 0
Query:    9 NVFEILERLPADALDKLYGKGVVTAKGMTSNHGQWTCRAILQSLPQLAKQHVMRLLFVEEYVEKGMLKSWVKKEYHRVHSTSIRRLVSLRVL-LQKNDG--QEYLLNPPFRESLQRALCASDKTPWQGDVPLVPDRSPPSIAKIEQKMHSQWQ 158
            N+ E L  L  D LD+LY            NH   TC A+ + LP LAK +VMR+LF+++ + +  +  WVKK+ H+ H   +  L  LR+   Q+  G  Q Y+LNP F+++L+ AL    +        L PDR    I  +++    +W+
Sbjct:   47 NLHEYLRELSPDILDRLY------------NHPA-TCLAVYRELPSLAKNYVMRMLFLDQPLPQAAVALWVKKDSHKDHDECVSVLAGLRLWHSQQLQGGLQGYILNPVFKDNLRIALLGGGRAWADEGSTLGPDRHARDIESLDRYAMERWE 186          
BLAST of mRNA_H-paniculata_contig4744.11786.1 vs. uniprot
Match: UPI00202671EA (general transcription factor IIH subunit 4-like n=1 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI00202671EA)

HSP 1 Score: 75.5 bits (184), Expect = 1.440e-13
Identity = 52/154 (33.77%), Postives = 76/154 (49.35%), Query Frame = 0
Query:    9 NVFEILERLPADALDKLYGKGVVTAKGMTSNHGQWTCRAILQSLPQLAKQHVMRLLFVEEYVEKGMLKSWVKKEYHRVHSTSIRRLVSLRVL---LQKNDGQEYLLNPPFRESLQRALCASDKTPWQGDVP-LVPDRSPPSIAKIEQKMHSQWQ 158
            N+ E L  L    LD+LY            NH   TC A+ + LP LAK +VMR+LF+E+ + K  + SWVKK+Y +    S   L+ LR+    L     Q  +LNP F+E+L  AL    K  W  D   L PD+    +  +++    +W+
Sbjct:   16 NLHEFLRGLSPGILDRLY------------NHPA-TCLAVFRELPGLAKNYVMRMLFLEQALPKAAVASWVKKDYVKEQDESSDVLLGLRLWHTQLLPGGLQGIILNPIFKENLHIALLGGGKA-WSDDTSQLGPDKHARDVPSLDKYAEERWE 155          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4744.11786.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJZ4_9PHAE2.310e-7574.53General transcription factor IIH subunit 4 n=1 Tax... [more]
D7FHY7_ECTSI6.460e-7373.91General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A1V9ZYD0_9STRA8.130e-1633.56General transcription factor IIH subunit 4 n=1 Tax... [more]
I0YPN8_COCSC1.460e-1536.00RNA polymerase II transcription factor B subunit 2... [more]
A0A2R6WYY1_MARPO1.500e-1533.33RNA polymerase II transcription factor B subunit 2... [more]
A0A061S035_9CHLO9.630e-1530.72RNA polymerase II transcription factor B subunit 2... [more]
A0A1Y1I418_KLENI1.800e-1435.10RNA polymerase II transcription factor B subunit 2... [more]
A0A3B4UAE7_SERDU1.190e-1332.68General transcription factor IIH subunit 4 n=7 Tax... [more]
A0A3B4UAI4_SERDU1.270e-1332.68General transcription factor IIH subunit 4 n=2 Tax... [more]
UPI00202671EA1.440e-1333.77general transcription factor IIH subunit 4-like n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004598Transcription factor TFIIH subunit p52/Tfb2PFAMPF03849Tfb2coord: 13..158
e-value: 5.3E-26
score: 91.4
IPR004598Transcription factor TFIIH subunit p52/Tfb2PANTHERPTHR13152TFIIH, POLYPEPTIDE 4coord: 7..158

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4744contigH-paniculata_contig4744:224..3095 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4744.11786.1mRNA_H-paniculata_contig4744.11786.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4744 224..3095 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4744.11786.1 ID=prot_H-paniculata_contig4744.11786.1|Name=mRNA_H-paniculata_contig4744.11786.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
ILSSGTNANVFEILERLPADALDKLYGKGVVTAKGMTSNHGQWTCRAILQ
SLPQLAKQHVMRLLFVEEYVEKGMLKSWVKKEYHRVHSTSIRRLVSLRVL
LQKNDGQEYLLNPPFRESLQRALCASDKTPWQGDVPLVPDRSPPSIAKIE
QKMHSQWQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004598TFIIH_p52/Tfb2