prot_H-paniculata_contig4718.11735.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4718.11735.1
Unique Nameprot_H-paniculata_contig4718.11735.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length192
Homology
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BLAST of mRNA_H-paniculata_contig4718.11735.1 vs. uniprot
Match: D8LNC2_ECTSI (COP9 signalosome complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNC2_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 7.370e-47
Identity = 100/163 (61.35%), Postives = 113/163 (69.33%), Query Frame = 0 
Query:   41 QDFERILKTHHASLMGDPFIKLYMDDILRTMRTQ------------VLLKAIAPYTRVTLPHVASELNGIPISEVEDLLVSLILDGKLEGKIDQVNQVFLCGKAPAHAAGGIGYIAGAGANAGLVVGPASRRAAATRTTVAMGRWVDSLRSLQAKVAAKVDYR 191
            +DFERILKTH ASLMGDPFIKLY+DDILRTMRTQ            VLLKAIAPYTRV LP++A ELN IP+++VEDLLVS ILDGK++GKIDQVNQV LCGK    AAGG    A + A A               T VA+ RW +SLRSL   +AAKVDYR
Sbjct:  352 KDFERILKTHRASLMGDPFIKLYIDDILRTMRTQKVSIMSNNTHFQVLLKAIAPYTRVKLPYLAGELNDIPVTDVEDLLVSCILDGKVDGKIDQVNQVVLCGKV-CPAAGGP---ASSEAGAXXXXXXXXXXXXXXXTAVALERWAESLRSLNTNIAAKVDYR 510
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BLAST of mRNA_H-paniculata_contig4718.11735.1 vs. uniprot
Match: A0A7S2V1L2_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1L2_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.260e-28
Identity = 60/106 (56.60%), Postives = 78/106 (73.58%), Query Frame = 0 
Query:   28 PSFDLASSVVSKHQD-----FERILKTHHASLMGDPFIKLYMDDILRTMRTQVLLKAIAPYTRVTLPHVASELNGIPISEVEDLLVSLILDGKLEGKIDQVNQVFL 128
            P     +S+V   Q+     FERILK+H  SLM D FIK Y+DD+ +T+ T+VL+K I PYTRV++ H+ASELN IP +EVE LLV+LILDGK++GKIDQV  VF+
Sbjct:   72 PEIRAMTSLVESFQNDDIAQFERILKSHSHSLMSDSFIKAYIDDLRQTICTKVLVKVIGPYTRVSISHMASELNNIPETEVEALLVALILDGKIQGKIDQVQGVFI 177
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BLAST of mRNA_H-paniculata_contig4718.11735.1 vs. uniprot
Match: A0A7S3W5Y9_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3W5Y9_9SPIT)

HSP 1 Score: 114 bits (284), Expect = 2.100e-26
Identity = 54/97 (55.67%), Postives = 79/97 (81.44%), Query Frame = 0 
Query:   32 LASSVVSKHQDFERILKTHHASLMGDPFIKLYMDDILRTMRTQVLLKAIAPYTRVTLPHVASELNGIPISEVEDLLVSLILDGKLEGKIDQVNQVFL 128
            L++ + ++ ++FE++LK H AS+MGD FIKLY+DD+L+ +RTQVLL+ I PYTR+ L  +A+ELN IP++EVEDLLVSLILDG ++G +DQ+  + L
Sbjct:  306 LSAYMNNEIREFEKVLKQHSASVMGDAFIKLYLDDLLKNIRTQVLLRVIRPYTRIRLSFIATELN-IPLNEVEDLLVSLILDGHIDGHVDQIGSLLL 401
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BLAST of mRNA_H-paniculata_contig4718.11735.1 vs. uniprot
Match: A0A7S2S7L9_9STRA (COP9 signalosome complex subunit 2 (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S7L9_9STRA)

HSP 1 Score: 103 bits (257), Expect = 9.440e-25
Identity = 48/86 (55.81%), Postives = 70/86 (81.40%), Query Frame = 0 
Query:   41 QDFERILKTHHASLMGDPFIKLYMDDILRTMRTQVLLKAIAPYTRVTLPHVASELNGIPISEVEDLLVSLILDGKLEGKIDQVNQV 126
            + FERIL+ +   +M D FI+ ++ D+LRT+RTQVL K IAPY R+TL  ++++LNGIP+ +VE+LLV+LILDGKL+G+IDQV+ +
Sbjct:   58 EKFERILQRNEGQIMDDEFIREHLADLLRTIRTQVLRKIIAPYKRITLTAISTKLNGIPVDDVENLLVALILDGKLDGRIDQVSGI 143
[Close]
BLAST of mRNA_H-paniculata_contig4718.11735.1 vs. uniprot
Match: A0A367JKE9_RHIAZ (COP9 signalosome complex subunit 2 n=1 Tax=Rhizopus azygosporus TaxID=86630 RepID=A0A367JKE9_RHIAZ)

HSP 1 Score: 103 bits (257), Expect = 1.050e-24
Identity = 48/84 (57.14%), Postives = 68/84 (80.95%), Query Frame = 0 
Query:   42 DFERILKTHHASLMGDPFIKLYMDDILRTMRTQVLLKAIAPYTRVTLPHVASELNGIPISEVEDLLVSLILDGKLEGKIDQVNQ 125
            +FE+ILK +H ++MGDPFI+ Y+DD+LR +RTQV++K I PYTR+ +  ++ +LN IP  EVE+LLV LILD ++ GKIDQVN+
Sbjct:   41 EFEQILKANHNAIMGDPFIRAYIDDVLRNIRTQVVIKLIKPYTRIDINFISKQLN-IPEDEVEELLVGLILDDRISGKIDQVNR 123
[Close]
BLAST of mRNA_H-paniculata_contig4718.11735.1 vs. uniprot
Match: A0A167R3L1_PHYB8 (COP9 signalosome complex subunit 2 n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167R3L1_PHYB8)

HSP 1 Score: 108 bits (270), Expect = 2.150e-24
Identity = 54/96 (56.25%), Postives = 76/96 (79.17%), Query Frame = 0 
Query:   34 SSVVSKHQ-----DFERILKTHHASLMGDPFIKLYMDDILRTMRTQVLLKAIAPYTRVTLPHVASELNGIPISEVEDLLVSLILDGKLEGKIDQVN 124
            +S+VS +Q     +FE+ILKT+H S+MGDPFI+ Y+DD+L+ +RTQVL+K I PYTR+ L  ++ +LN IP+ EVE+LLV LIL+ K+ G+IDQVN
Sbjct:  312 TSLVSAYQKKEIREFEKILKTNHNSIMGDPFIRTYIDDVLKNIRTQVLIKLIKPYTRIELGFISKQLN-IPVEEVEELLVGLILNEKIAGRIDQVN 406
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BLAST of mRNA_H-paniculata_contig4718.11735.1 vs. uniprot
Match: A0A2G2VNP3_CAPBA (PCI domain-containing protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VNP3_CAPBA)

HSP 1 Score: 105 bits (262), Expect = 2.250e-24
Identity = 49/89 (55.06%), Postives = 71/89 (79.78%), Query Frame = 0 
Query:   42 DFERILKTHHASLMGDPFIKLYMDDILRTMRTQVLLKAIAPYTRVTLPHVASELNGIPISEVEDLLVSLILDGKLEGKIDQVNQVFLCG 130
            +FE+ILK++  ++M DPFI+ Y++D+LR +RTQVLLK I PYTR+ +P ++ ELN +P  +VE+LLVSLILD ++ G IDQVN++  CG
Sbjct:   92 EFEKILKSNRRTIMDDPFIRNYIEDLLRNVRTQVLLKIIKPYTRIRIPFISKELN-VPEKDVEELLVSLILDNRIHGHIDQVNRLLECG 179
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BLAST of mRNA_H-paniculata_contig4718.11735.1 vs. uniprot
Match: A0A2P6VF13_9CHLO (COP9 signalosome complex subunit 2 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VF13_9CHLO)

HSP 1 Score: 108 bits (269), Expect = 2.870e-24
Identity = 51/86 (59.30%), Postives = 70/86 (81.40%), Query Frame = 0 
Query:   41 QDFERILKTHHASLMGDPFIKLYMDDILRTMRTQVLLKAIAPYTRVTLPHVASELNGIPISEVEDLLVSLILDGKLEGKIDQVNQV 126
            +DFE IL+ H  ++MGDPFI  YM D+L  +RTQV+LKAI PYTRV +P +AS+LN +P ++VE LL+SLILDG++ G+IDQV+Q+
Sbjct:  319 RDFEAILRMHRGAIMGDPFISQYMRDLLANVRTQVVLKAIRPYTRVRIPFIASQLN-VPATDVEQLLISLILDGRVAGRIDQVHQL 403
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BLAST of mRNA_H-paniculata_contig4718.11735.1 vs. uniprot
Match: A0A4W5LJW0_9TELE (COP9 signalosome complex subunit 2 n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5LJW0_9TELE)

HSP 1 Score: 102 bits (253), Expect = 4.880e-24
Identity = 50/104 (48.08%), Postives = 77/104 (74.04%), Query Frame = 0 
Query:   28 PSFDLASSVVSKHQ-----DFERILKTHHASLMGDPFIKLYMDDILRTMRTQVLLKAIAPYTRVTLPHVASELNGIPISEVEDLLVSLILDGKLEGKIDQVNQV 126
            P     +++VS +Q     +FE+ILKT+H+++M DPFI+ +++++LR +RTQVL+K I PYTR+ +P ++ ELN I + +VE LLV  ILDG + G+IDQVNQ+
Sbjct:   28 PDILAMTNLVSSYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELN-IDVCDVESLLVQCILDGTINGRIDQVNQL 130
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BLAST of mRNA_H-paniculata_contig4718.11735.1 vs. uniprot
Match: A0A0S7L811_9TELE (COP9 signalosome complex subunit 2 n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7L811_9TELE)

HSP 1 Score: 101 bits (251), Expect = 6.880e-24
Identity = 54/126 (42.86%), Postives = 81/126 (64.29%), Query Frame = 0 
Query:    1 MKFEVSLIASTWLHWGYCLSADVTSPTPSFDLASSVVSKHQDFERILKTHHASLMGDPFIKLYMDDILRTMRTQVLLKAIAPYTRVTLPHVASELNGIPISEVEDLLVSLILDGKLEGKIDQVNQV 126
            M+ EV  IA TW  +         S   + D+         +FE+ILKT+H+++M DPFI+ +++++LR +RTQVL+K I PYTR+ +P ++ ELN I + +VE LLV  ILD  + G+IDQVNQ+
Sbjct:    1 MRTEVPEIAETWEFFKQLRLFSFFSAYQNNDIT--------EFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELN-IDVCDVESLLVQCILDNTIHGRIDQVNQL 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4718.11735.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNC2_ECTSI7.370e-4761.35COP9 signalosome complex subunit 2 n=2 Tax=Ectocar... [more]
A0A7S2V1L2_9STRA2.260e-2856.60COP9 signalosome complex subunit 2 n=1 Tax=Fibroca... [more]
A0A7S3W5Y9_9SPIT2.100e-2655.67Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S2S7L9_9STRA9.440e-2555.81COP9 signalosome complex subunit 2 (Fragment) n=1 ... [more]
A0A367JKE9_RHIAZ1.050e-2457.14COP9 signalosome complex subunit 2 n=1 Tax=Rhizopu... [more]
A0A167R3L1_PHYB82.150e-2456.25COP9 signalosome complex subunit 2 n=1 Tax=Phycomy... [more]
A0A2G2VNP3_CAPBA2.250e-2455.06PCI domain-containing protein n=1 Tax=Capsicum bac... [more]
A0A2P6VF13_9CHLO2.870e-2459.30COP9 signalosome complex subunit 2 n=1 Tax=Micract... [more]
A0A4W5LJW0_9TELE4.880e-2448.08COP9 signalosome complex subunit 2 n=1 Tax=Hucho h... [more]
A0A0S7L811_9TELE6.880e-2442.86COP9 signalosome complex subunit 2 n=1 Tax=Poecili... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00753PINTcoord: 62..143
e-value: 5.4E-10
score: 49.2
NoneNo IPR availableGENE3D1.25.40.570coord: 34..142
e-value: 6.7E-32
score: 112.9
NoneNo IPR availablePANTHERPTHR1067826S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2coord: 40..179
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..191
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.472
IPR000717Proteasome component (PCI) domainSMARTSM00088PINT_4coord: 62..143
e-value: 5.4E-10
score: 49.2
IPR000717Proteasome component (PCI) domainPFAMPF01399PCIcoord: 36..128
e-value: 9.7E-17
score: 61.4
IPR000717Proteasome component (PCI) domainPROSITEPS50250PCIcoord: 1..134
score: 18.13
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 56..129

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4718contigH-paniculata_contig4718:1875..4516 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4718.11735.1mRNA_H-paniculata_contig4718.11735.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4718 688..5883 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4718.11735.1 ID=prot_H-paniculata_contig4718.11735.1|Name=mRNA_H-paniculata_contig4718.11735.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=192bp
MKFEVSLIASTWLHWGYCLSADVTSPTPSFDLASSVVSKHQDFERILKTH
HASLMGDPFIKLYMDDILRTMRTQVLLKAIAPYTRVTLPHVASELNGIPI
SEVEDLLVSLILDGKLEGKIDQVNQVFLCGKAPAHAAGGIGYIAGAGANA
GLVVGPASRRAAATRTTVAMGRWVDSLRSLQAKVAAKVDYR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000717PCI_dom
IPR036390WH_DNA-bd_sf