prot_H-paniculata_contig4568.11450.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4568.11450.1
Unique Nameprot_H-paniculata_contig4568.11450.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length348
Homology
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BLAST of mRNA_H-paniculata_contig4568.11450.1 vs. uniprot
Match: D7G7H2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H2_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 5.340e-21
Identity = 62/129 (48.06%), Postives = 79/129 (61.24%), Query Frame = 0 
Query:   64 RVAEVERCAAKSWKSAIVCLGNMRKGGVAPGVAAYNVALRACASAGEFTQAETLLEDMKSSGATPDKTSFDALVAAADMASML----NDRGLPDFSGVSNDVRKGDGSDSSGES------SCWSGVRPV 182
            R AEV++CA K WKSA++CLGNMRKGGVAPG +AYNVAL+ACA AGE+ +A  L+EDM+ SGA PD+T    + AA D   ++    ND    D  G  + V  G   +  GES      + W   RP 
Sbjct:   58 RAAEVQKCADKGWKSALICLGNMRKGGVAPGSSAYNVALKACAGAGEWGRAAALVEDMQGSGAIPDETIVAEIRAAGDNVVVMELGDNDDLSCDSGGDVSSVLSGAARNKGGESGGGIQDAAWPSRRPT 186
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BLAST of mRNA_H-paniculata_contig4568.11450.1 vs. uniprot
Match: A0A6H5KGB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB2_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 7.780e-20
Identity = 50/83 (60.24%), Postives = 63/83 (75.90%), Query Frame = 0 
Query:   64 RVAEVERCAAKSWKSAIVCLGNMRKGGVAPGVAAYNVALRACASAGEFTQAETLLEDMKSSGATPDKTSFDALVAAADMASML 146
            R AEV++CA K WKSA++CLGNMRKGGVAPG AAYNVAL+ACA AGE+ +A  L+EDM+ SGA PD+     + AA D   ++
Sbjct:   58 RAAEVQKCADKGWKSALICLGNMRKGGVAPGSAAYNVALKACAGAGEWGRAAALVEDMQGSGAIPDEGIVAEIRAAGDKTGVI 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4568.11450.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7H2_ECTSI5.340e-2148.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGB2_9PHAE7.780e-2060.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 97..129
e-value: 4.1E-6
score: 24.6
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 84..138
e-value: 2.3E-4
score: 21.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 94..128
score: 10.611
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 58..159
e-value: 2.3E-12
score: 48.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4568contigH-paniculata_contig4568:5419..14870 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4568.11450.1mRNA_H-paniculata_contig4568.11450.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4568 5394..14924 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4568.11450.1 ID=prot_H-paniculata_contig4568.11450.1|Name=mRNA_H-paniculata_contig4568.11450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=348bp
MTSRAIAQISRRRSFTSTGRAVQSQERCLAILSMGTKGALGRSSSSPNVI
PRSLRRMEHADKARVAEVERCAAKSWKSAIVCLGNMRKGGVAPGVAAYNV
ALRACASAGEFTQAETLLEDMKSSGATPDKTSFDALVAAADMASMLNDRG
LPDFSGVSNDVRKGDGSDSSGESSCWSGVRPVDGGLDEPSPQEIHCMSTK
CFSTSEEPSWSGITRVEASFSSLSTSPADRTFATSTAAAAAHAAASCVPQ
SQGYSNLRDWSNGNSNGNSNGNGSNHYANSSNSSGNNNDHIANNNDRDWS
NNVRSADGSGNDDADSIIRVVTEEWGGMEPVNEFRMSGQIEEQWGCD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf