prot_H-paniculata_contig4559.11433.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4559.11433.1
Unique Nameprot_H-paniculata_contig4559.11433.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length669
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4559.11433.1 vs. uniprot
Match: D7G420_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G420_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 3.710e-20
Identity = 165/231 (71.43%), Postives = 189/231 (81.82%), Query Frame = 0 
Query:  300 VSLRTAADIGDDTPIA-IGDFHFTSEEIERMARRYPAMSTLAADYAVPLLGWLTMELGMSLAEMRNLVMRHPRLLAYRVKSHVEPKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPRANQMRTREITPLFGSHKWVVTTYTDAQFARWLDG 529
            V+   A D     P++ +GD++F+ EE+ +M++RYP ++TL     +PLLGWLT EL M+  +MR L++RHPRL+AYRV SHV PKT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         +PRA QMR ++I P FG HKWVV+TYTD QF RWL+G
Sbjct:  165 VAAADAVDGSASDPVSCLGDYNFSFEELNKMSKRYPTVNTLGDKAPMPLLGWLTRELDMNHFDMRCLILRHPRLMAYRVTSHVAPKTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRSLDKRMLPRAQQMREKDIEPRFGPHKWVVSTYTDKQFTRWLEG 395
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4559.11433.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G420_ECTSI3.710e-2071.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 437..469
e-value: 1.1E-4
score: 31.6
coord: 363..395
e-value: 0.087
score: 21.9
coord: 400..432
e-value: 0.0036
score: 26.5
coord: 474..505
e-value: 34.0
score: 13.3
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 354..523
e-value: 3.2E-23
score: 82.1
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 375..505
e-value: 5.3E-22
score: 80.3
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 328..523
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 328..523
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..563
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 564..590
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 591..668

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4559contigH-paniculata_contig4559:3105..12349 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4559.11433.1mRNA_H-paniculata_contig4559.11433.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4559 2489..12735 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4559.11433.1 ID=prot_H-paniculata_contig4559.11433.1|Name=mRNA_H-paniculata_contig4559.11433.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=669bp
MNGNPMLPAGDNDYDSDVELEIDVGLHDDTPGNYGHNSSGIDDHNDNQAA
PSGEPHTNSDHSGPTEEEQLQQHHHHQVTLQEVEAAAAAEFSSATVAAAT
ARATRAAFGAASPPPSPPPPLEDSAIEHTSAVSTDLPLPVIVVSKKRATP
TGGKTPLGRVDDAGVAAAIAAEAAGTGGGGGASGGDYVAAAAAVAAAAVE
EATATATAVAAAAAVMATNSDAGSNSSPGFTEGEIGMMGRALAGDSGGLG
EAGAGVEDSAESDEGAGTGRVDVGGDVDGLEVDVGCGLNGGEEGSGSAAV
SLRTAADIGDDTPIAIGDFHFTSEEIERMARRYPAMSTLAADYAVPLLGW
LTMELGMSLAEMRNLVMRHPRLLAYRVKSHVEPKTRWLSNRLGLGQAQLK
KLVLTYPAVLTRGVESNLEPKVKWLEERLGATQDEVGILVKRFPMIFGYS
TEKNLEPTIAFFRGEMGGGLEEVKSTVMSCPAILSRSLEKRIVPRANQMR
TREITPLFGSHKWVVTTYTDAQFARWLDGIRRRGATAEAGAAEVDAGKDI
PEGSGSAENKTGGAVAAVAAAAGAAAAAGAAAAAGAVAAAEKRPVKESKR
PKRGRTMPNCRDIAEEQSREHSQESPGGGSVENGLERLVVEEEGGEGRQD
ERGEMEVPISEIAGVVAS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf