prot_H-paniculata_contig4496.11314.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4496.11314.1
Unique Nameprot_H-paniculata_contig4496.11314.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length161
Homology
BLAST of mRNA_H-paniculata_contig4496.11314.1 vs. uniprot
Match: A0A835YML7_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YML7_9STRA)

HSP 1 Score: 206 bits (523), Expect = 1.950e-58
Identity = 101/125 (80.80%), Postives = 114/125 (91.20%), Query Frame = 0
Query:   37 QPTARLLISRIVMENFKSYGGVREIGPFHKRFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLKKVSELIHRSDTFPHLDFARVAVHFVDILDSEGSADEYEEVPGTELVVTRTAFSNNQSKYHV 161
            QP +RLLI+++VMENFKSYGGVREIGPFHK FSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRL KVSELIHRS+T+P+LD A+V+VHFVDI+D + S D+Y EVPGTELVVTRTA+ NN SKY V
Sbjct:   36 QPKSRLLITKLVMENFKSYGGVREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSETYPNLDAAKVSVHFVDIIDDQSSEDDYAEVPGTELVVTRTAYRNNTSKYQV 160          
BLAST of mRNA_H-paniculata_contig4496.11314.1 vs. uniprot
Match: D8LQ01_ECTSI (Structural maintenance of chromosomes protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ01_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 1.500e-56
Identity = 99/122 (81.15%), Postives = 110/122 (90.16%), Query Frame = 0
Query:   40 ARLLISRIVMENFKSYGGVREIGPFHKRFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLKKVSELIHRSDTFPHLDFARVAVHFVDILDSEGSADEYEEVPGTELVVTRTAFSNNQSKYHV 161
            ARLLI+++ MENFKSYGG+REIGPFHK FSSIVGPNGSGKSNVIDAMLFVFGKRAKKL L K+ ELIHRSDT+P+LDF RV+VHFVDILD  GS D+YEEVPGTELVVTRTA+ +N SKY V
Sbjct:   84 ARLLITKMEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLCLNKLGELIHRSDTYPNLDFCRVSVHFVDILDVSGSEDDYEEVPGTELVVTRTAYKDNHSKYEV 205          
BLAST of mRNA_H-paniculata_contig4496.11314.1 vs. uniprot
Match: A0A813A1Q5_9DINO (SMC4 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A1Q5_9DINO)

HSP 1 Score: 179 bits (455), Expect = 4.670e-55
Identity = 85/121 (70.25%), Postives = 103/121 (85.12%), Query Frame = 0
Query:   41 RLLISRIVMENFKSYGGVREIGPFHKRFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLKKVSELIHRSDTFPHLDFARVAVHFVDILDSEGSADEYEEVPGTELVVTRTAFSNNQSKYHV 161
            RL+I+R+  ENFKSYGGV+ IGPFHKRFS++VGPNGSGKSNVID MLFVFGKRAKKLRL K+SELIH+SD +P+LDFARV+V+F DI+D+    D Y  VPG+E+VVTR A+ NN SKY +
Sbjct:   10 RLMITRLEFENFKSYGGVKSIGPFHKRFSAVVGPNGSGKSNVIDGMLFVFGKRAKKLRLNKLSELIHKSDQYPNLDFARVSVYFQDIIDTSDEDDGYTVVPGSEMVVTRVAYKNNTSKYFI 130          
BLAST of mRNA_H-paniculata_contig4496.11314.1 vs. uniprot
Match: F0YFI0_AURAN (Structural maintenance of chromosomes protein 4 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFI0_AURAN)

HSP 1 Score: 193 bits (490), Expect = 5.550e-54
Identity = 94/129 (72.87%), Postives = 110/129 (85.27%), Query Frame = 0
Query:   33 PAPTQPTARLLISRIVMENFKSYGGVREIGPFHKRFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLKKVSELIHRSDTFPHLDFARVAVHFVDILDSEGSADEYEEVPGTELVVTRTAFSNNQSKYHV 161
            P  T  T RL+I ++V+ENFKSYGG REIGPFHKRFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRL KVSELIH+SDT+P LD+A+V+VHF D++D +   D YE VPGTE+VV+RTA+ +N SKY V
Sbjct:  840 PPTTAATPRLMIEKMVLENFKSYGGQREIGPFHKRFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHKSDTYPDLDWAKVSVHFADVIDLQDGTDAYEVVPGTEVVVSRTAYRDNGSKYQV 968          
BLAST of mRNA_H-paniculata_contig4496.11314.1 vs. uniprot
Match: A0A8J2SP08_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SP08_9STRA)

HSP 1 Score: 190 bits (483), Expect = 4.720e-53
Identity = 94/125 (75.20%), Postives = 112/125 (89.60%), Query Frame = 0
Query:   38 PTARLLISRIVMENFKSYGGVREIGPFHKRFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLKKVSELIHRSDTFPHLDFARVAVHFVDILDSEGS-ADEYEEVPGTELVVTRTAFSNNQSKYHV 161
            P +RL+I+++V+ENFKSYGGVREIGPFHKRFSS+VGPNGSGKSNVIDAMLFVFGKRAKKLRL KVSELIHRS+ +P+LD ARV+VHF D+LD +G+  D +  V G+ELVV+RTAFS+NQSKY V
Sbjct:   12 PASRLMITKMVLENFKSYGGVREIGPFHKRFSSVVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSEQYPNLDSARVSVHFADVLDEDGADPDSFTIVEGSELVVSRTAFSSNQSKYDV 136          
BLAST of mRNA_H-paniculata_contig4496.11314.1 vs. uniprot
Match: A0A812TSM6_SYMMI (SMC4 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TSM6_SYMMI)

HSP 1 Score: 179 bits (455), Expect = 2.320e-51
Identity = 88/123 (71.54%), Postives = 105/123 (85.37%), Query Frame = 0
Query:   39 TARLLISRIVMENFKSYGGVREIGPFHKRFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLKKVSELIHRSDTFPHLDFARVAVHFVDILDSEGSADEYEEVPGTELVVTRTAFSNNQSKYHV 161
            T RL+I+ +V+ENFKSY G +EIGPFHKRFSSIVGPNGSGKSNVIDA+LFVFGKRAK+LRL KVSELIHRS  FP L++A+VAV+F  I+D E S D+YE +PG+E VV+R AF +NQSKY V
Sbjct:   11 TTRLMITSMVLENFKSYAGEQEIGPFHKRFSSIVGPNGSGKSNVIDALLFVFGKRAKQLRLNKVSELIHRSSRFPDLEYAKVAVYFQLIIDDESSQDDYEVIPGSEFVVSRIAFQSNQSKYSV 133          
BLAST of mRNA_H-paniculata_contig4496.11314.1 vs. uniprot
Match: I2CP68_NANGC (Structural maintenance of chromosome 4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP68_NANGC)

HSP 1 Score: 173 bits (439), Expect = 1.360e-49
Identity = 87/121 (71.90%), Postives = 103/121 (85.12%), Query Frame = 0
Query:   40 ARLLISRIVMENFKSYGGVREIGPFHKRFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLKKVSELIHRSDTFPHLDFARVAVHFVDILDSEGSADE-YEEVPGTELVVTRTAFSNNQSKY 159
            +RL+I ++V+ENFKSY G++EIGPFHK FSS+VGPNGSGKSNVIDAMLFVFGKRAKKLRL KVSELIH+S+  P L+ A V+VHF +I+D +   D  YE VPG+E VVTRTAFSNNQSKY
Sbjct:   15 SRLMIVKMVLENFKSYAGIKEIGPFHKCFSSVVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHKSEQHPSLESASVSVHFQEIVDRDDLGDNGYEVVPGSECVVTRTAFSNNQSKY 135          
BLAST of mRNA_H-paniculata_contig4496.11314.1 vs. uniprot
Match: A0A2P6NYI7_9EUKA (Structural maintenance of chromosomes protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NYI7_9EUKA)

HSP 1 Score: 178 bits (452), Expect = 7.030e-49
Identity = 87/127 (68.50%), Postives = 106/127 (83.46%), Query Frame = 0
Query:   35 PTQPTARLLISRIVMENFKSYGGVREIGPFHKRFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLKKVSELIHRSDTFPHLDFARVAVHFVDILDSEGSADEYEEVPGTELVVTRTAFSNNQSKYHV 161
            P +P +RL+I R+V+ENFKSY GV++IGPFHK FSS+VGPNGSGKSNVIDAMLFVFGKRAK+LR  KVSELIHRS+  P+L + +V+VHF  I+D +G  DEY+ VPG+E VVTRT F NN SKYH+
Sbjct:  201 PDKPKSRLMIPRMVLENFKSYAGVQDIGPFHKCFSSVVGPNGSGKSNVIDAMLFVFGKRAKQLRHNKVSELIHRSEKHPNLSYCKVSVHFQMIIDKDG--DEYDIVPGSEFVVTRTGFDNNSSKYHI 325          
BLAST of mRNA_H-paniculata_contig4496.11314.1 vs. uniprot
Match: A0A7S1HG93_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HG93_HEMAN)

HSP 1 Score: 162 bits (411), Expect = 1.500e-48
Identity = 78/124 (62.90%), Postives = 100/124 (80.65%), Query Frame = 0
Query:   38 PTARLLISRIVMENFKSYGGVREIGPFHKRFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLKKVSELIHRSDTFPHLDFARVAVHFVDILDSEGSADEYEEVPGTELVVTRTAFSNNQSKYHV 161
            P  RL+I+ + +ENFKSY GV+ IGPFHKRFSS+VGPNGSGKSNVIDAMLFVFGK+AK+LRL KVSELIH+S+   ++ F +V+VHF +I+D     ++YE VPGTEL + R A S+NQS Y++
Sbjct:   18 PPTRLVITHMTLENFKSYAGVQHIGPFHKRFSSVVGPNGSGKSNVIDAMLFVFGKKAKQLRLNKVSELIHKSENKMNIPFCKVSVHFNEIIDKNVDGEDYEVVPGTELKMCRVATSDNQSDYYL 141          
BLAST of mRNA_H-paniculata_contig4496.11314.1 vs. uniprot
Match: A0A7S3GXC7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXC7_9STRA)

HSP 1 Score: 160 bits (404), Expect = 5.440e-48
Identity = 78/106 (73.58%), Postives = 93/106 (87.74%), Query Frame = 0
Query:   40 ARLLISRIVMENFKSYGGVREIGPFHKRFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLKKVSELIHRSDTFPHLDFARVAVHFVDILDSEGSADEYEEVPGTEL 145
            ARL+I+++V+ENFKSY G +EIGPFHKRFSSIVGPNGSGKSNVIDA+LFVFGK+AK+LRL KVSELIH+S T+P+LDF RVAVHF  I D E S D+YE +PG+E 
Sbjct:    6 ARLMITKMVLENFKSYAGCQEIGPFHKRFSSIVGPNGSGKSNVIDALLFVFGKKAKQLRLNKVSELIHKSATYPNLDFTRVAVHFQLIYDIEESDDDYEMIPGSEF 111          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4496.11314.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YML7_9STRA1.950e-5880.80Structural maintenance of chromosomes protein n=1 ... [more]
D8LQ01_ECTSI1.500e-5681.15Structural maintenance of chromosomes protein n=2 ... [more]
A0A813A1Q5_9DINO4.670e-5570.25SMC4 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
F0YFI0_AURAN5.550e-5472.87Structural maintenance of chromosomes protein 4 n=... [more]
A0A8J2SP08_9STRA4.720e-5375.20Structural maintenance of chromosomes protein n=1 ... [more]
A0A812TSM6_SYMMI2.320e-5171.54SMC4 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
I2CP68_NANGC1.360e-4971.90Structural maintenance of chromosome 4 (Fragment) ... [more]
A0A2P6NYI7_9EUKA7.030e-4968.50Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S1HG93_HEMAN1.500e-4862.90Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S3GXC7_9STRA5.440e-4873.58Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 43..161
e-value: 2.5E-28
score: 101.6
NoneNo IPR availablePANTHERPTHR43939FAMILY NOT NAMEDcoord: 19..160
NoneNo IPR availablePANTHERPTHR43939:SF1STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 4coord: 19..160
IPR003395RecF/RecN/SMC, N-terminalPFAMPF02463SMC_Ncoord: 44..160
e-value: 1.8E-32
score: 112.6
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 44..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4496contigH-paniculata_contig4496:6872..8272 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4496.11314.1mRNA_H-paniculata_contig4496.11314.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4496 6872..8273 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4496.11314.1 ID=prot_H-paniculata_contig4496.11314.1|Name=mRNA_H-paniculata_contig4496.11314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp
QDNTSAGSNAASSAVEAVAATAAATQETPAPGPAPTQPTARLLISRIVME
NFKSYGGVREIGPFHKRFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLK
KVSELIHRSDTFPHLDFARVAVHFVDILDSEGSADEYEEVPGTELVVTRT
AFSNNQSKYHV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003395RecF/RecN/SMC_N
IPR027417P-loop_NTPase