prot_H-paniculata_contig4237.10834.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4237.10834.1
Unique Nameprot_H-paniculata_contig4237.10834.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length1038
Homology
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BLAST of mRNA_H-paniculata_contig4237.10834.1 vs. uniprot
Match: D7FUP8_ECTSI (CAP-Gly domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP8_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.330e-11
Identity = 62/214 (28.97%), Postives = 92/214 (42.99%), Query Frame = 0 
Query:  848 FLHGDGAVAPVTLVRRCLAKNRRPSSKGEVCIPMPLVLEHDSKNMVALREPGETVKSVWRSRKSAVTSAKKTLWRWFTSGIGFGSRDVHG-------PPKDCTHVHLSSTPAGELVLMVNQP-----------WISNDTAGA------DYGVVLGLPHGQRQPGFKM-----------TEQHAALLAPGGELCVFSRGGLVHWIAKGVNNWHSY 1026
            F+  DG +  V  +  C A    P    E C   P++L H  KN++ L  PG+  K  WRSRKS +  AK+++    +S     S    G       PP+    ++L  T  G L LM   P               D  GA      ++GV+LG   G      ++            E++AA+L PGG LCVF   G V  +++GV+ W ++
Sbjct: 2098 FMRPDGGMVTVEFLTGCRAAKIAPGL-SEGCESTPMLLGHTGKNLMELIRPGKKGKVAWRSRKSLIKIAKQSVASKVSSLFRRRSESPEGGGPSGPVPPQAIAGLYLRETSDGRLALMKKDPSGGSGGVGDGDMDGEDLGGAAGHDVEEFGVLLGGVSGAGAGAGEVGXXXXXXXXXGEEKYAAMLTPGGGLCVFGTRGGVRCMSRGVHRWATH 2310
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BLAST of mRNA_H-paniculata_contig4237.10834.1 vs. uniprot
Match: A0A6H5JJQ7_9PHAE (CAP-Gly domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJQ7_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.560e-10
Identity = 63/218 (28.90%), Postives = 96/218 (44.04%), Query Frame = 0 
Query:  848 FLHGDGAVAPVTLVRRCLAKNRRPSSKGEVCIPMPLVLEHDSKNMVALREPGETVKSVWRSRKSAVTSAKKTLWRWFTSGIGFGSRDVHG-------PPKDCTHVHLSSTPAGELVLMVNQPWISND-------------TAGAD---YGVVLGLPHGQRQPGFKMT----------------EQHAALLAPGGELCVFSRGGLVHWIAKGVNNWHSY 1026
            F+  DG +  V  +  C A    P    E C   P++L +  KN++ L  PG+  K  WRSRKS + +AK+++    +S     S+   G       PP+    + L  T  G L LM +    S+              TAG D   +GV+LG   G  + G +                  E++AA+L PGG LCVF   G V  +++GV+ W ++
Sbjct: 2416 FMRPDGGMVTVEFLTGCRAAKIAPGLSEE-CGSTPMLLGYTGKNLMELIRPGKKGKVAWRSRKSLIKTAKQSVGFKVSSMFRRRSKSPEGGGPSGPAPPQAIAGLSLRETSDGRLALMKDPSGGSSGGGDGDMDGEDLGGTAGHDVVEFGVLLG---GVPEAGVEEAVAGXXXXXXXXXXXXEEKYAAMLTPGGGLCVFGTRGGVRCMSRGVHRWATH 2629
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4237.10834.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUP8_ECTSI2.330e-1128.97CAP-Gly domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JJQ7_9PHAE3.560e-1028.90CAP-Gly domain-containing protein n=1 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..409
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 432..1037
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 410..431

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4237contigH-paniculata_contig4237:5324..12071 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4237.10834.1mRNA_H-paniculata_contig4237.10834.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4237 4974..13821 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4237.10834.1 ID=prot_H-paniculata_contig4237.10834.1|Name=mRNA_H-paniculata_contig4237.10834.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1038bp
MSQKGGTHGGGVLSVPQGVPPMLSTSSSLPVRSILLGASAGTNATSDRKL
VAQAPASAAPDPPPSTDVVGTAVATVPEYTTNEPLAGEALDGVAIDVSRA
SLTNVPKEVSGVQSVHSSAGSNANEEGVITMGSLLLTERAIAERNSRTTN
IRGVAGAISTGAISSGAVAAAGAMSLPKREETTADENINVRCRNATHTCV
AGAAATAVPEPTADTLTAGEASARAAGGVSRHSVTSIYREAGGVQSSRSS
TGSNDEEEGAISTGAPLLTEGANAEYDSRTLSDRQGASPAGAAAPATGAM
PERRRERMTAAEEDDIATSYAVENSTATAVTLTIRAIAEHDLRTSSEQGS
PPLPGEVEADAVVTEELPVAHAVVSATLQPSAEGPISQEAEAVVFDFDDQ
GVVRLRRRPGIGCGHICAVLVVLAAVMVAVLCQGNVGLMGNGTGRDVCRG
PGGGRPGGQDSFLQAFGRAANGMQEIVDEYVPEESRLMRFVVDGPVSLGV
GVGDSVRDLAGRWRSYVLGTVGERRHPGSTTGSDHNGDSDRSDGDDDDPV
APPLTDAPESRRGRPHVPHGRLVDALMAGGEIRTLRKIQSPMKTWRKKGR
SRIPRSSETLREDGLPRREGLKTVRESLFGTVVDVGSGEVVDAVAPFTAA
SAQENWLWERQASRRQVSTYLWMKYTTDSEGDVGRFWWVREAKPPSEEEV
GLTQSEGDVERFQLEHDTEPLFEKEMEISRFEDDVEWVWWVPEFSSPSET
GVWRLGRQGLEADAKSDIHREKESGSFGNSELPEVHRAVDSEITRAEEKS
DEADRRSDTDVDVRSEPSAPPRQNEVERTLTGHTDQEELEQVHRGNQFLH
GDGAVAPVTLVRRCLAKNRRPSSKGEVCIPMPLVLEHDSKNMVALREPGE
TVKSVWRSRKSAVTSAKKTLWRWFTSGIGFGSRDVHGPPKDCTHVHLSST
PAGELVLMVNQPWISNDTAGADYGVVLGLPHGQRQPGFKMTEQHAALLAP
GGELCVFSRGGLVHWIAKGVNNWHSYEDERALRYEDS*
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