prot_H-paniculata_contig3858.10088.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3858.10088.1
Unique Nameprot_H-paniculata_contig3858.10088.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length484
Homology
BLAST of mRNA_H-paniculata_contig3858.10088.1 vs. uniprot
Match: D8LHI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHI7_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 3.720e-26
Identity = 123/305 (40.33%), Postives = 152/305 (49.84%), Query Frame = 0
Query:   31 GVARPGRGE-VDLEALQDAFFRDNLQPSAKVTRSKPPTIKTKDKSVTTTEGENLKIGGIVERAAPPAPRPIST-------ITSTNATATLPGGSITSS------------PPS-----PPLPLRAPAGGMVPNAPGVVS-NVTERAVRAPAPMKIS-----VGXXXXVG----KGRFGGVMAPKGGTAASFS--VGGFPAVRHRSEMGTVRLG-GAGASKRQQPPQDAASPNSRADPSAATHTANTRLRNSSGRNNSPGGVQEDIHQENLARVLSMSPQEVEEAQQEIFSTLSPASLDLLRRRGR 297
            GVARPGRG+ VDLEALQDAF R   +PSAKV+R+KPPTIK         E ++ + G      A  A  P ST            ATA  PG   T              PP      P     +P GGM+ NAPGVVS +V ER V+ PAPM+I       G    +G    K RFG     K  TA +    +GGFPAVRHRSEMG V+LG GA A+                  +AAT                 G +  DIH+ENL+R+ +MSP E+ +AQQEI + L P +L++L RRGR
Sbjct:    9 GVARPGRGDDVDLEALQDAFLRSAERPSAKVSRAKPPTIKAGSSLGVRKEDDDPRSG---RGGADTANAPRSTGGXXXXXXAVAAATAISPGTQPTRDNNNREPPRSLGVPPEEREKGPLTSASSPTGGMILNAPGVVSKSVREREVKPPAPMRIGGFAGGAGAGGAIGRRGDKQRFGLAKGAKHVTAVAERGIIGGFPAVRHRSEMGLVKLGVGAAAASXXXXXXXXXXXXXXXXGNAATERGGXXXXXXXXXXX-VGNIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGR 309          
BLAST of mRNA_H-paniculata_contig3858.10088.1 vs. uniprot
Match: A0A6H5JHK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK5_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.060e-15
Identity = 114/356 (32.02%), Postives = 145/356 (40.73%), Query Frame = 0
Query:  131 PAGGMVPNAPGVVS-NVTERAVRAPAPMKISVGXXXXVGKG----------RFGGVMAPKGGTAASFS--VGGFPAVRHRSEMGTVRLGGAGASKRQQPPQDAASPNSRADPSAATHTANTRLRNSSGRNNSP-----------GGVQEDIHQENLARVLSMSPQEVEEAQQEIFSTLSPASLDLLRRRGRAQATGSNPSGGRNRCVGAATAGGNGDGDPQTGEIIGAPSSVRGVTVTAGDSLCESDAPDVVQTPASALPITSDDDTMAAAGHTDRKSRDDPPSDIWR-----------------SSAAGPAGGAPTGAQRAATRAGGIDSEESLAAALQYLPWEERVKSSWTVSV 445
            P GGM+ NAPGVVS +V ER V+ PAPM+I  G     G G          R G     K G AA+ S  +GGFPA RHRSEMG V+LG   A                                                   G +  DIH+ENL+R+ +MSP E+ +AQQEI + L P +L++L RRGR +A G   +G    C  A          P                        E+      ++P   L  TS  ++ A  G    +S    PS                     S +     GAPTGAQR      GIDS+E+L AAL  LP EER KS WT++ 
Sbjct:  125 PTGGMILNAPGVVSKSVREREVKPPAPMRIG-GFAGGAGAGGVIVTRGDKQRLGLAKGAKHGMAAAGSGIIGGFPAARHRSEMGLVKLGAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGNIPGDIHEENLSRISAMSPDEIADAQQEIRAALPPGALEMLLRRGRGRAGGGKTAG----CTSA----------PXXXXXXXXXXXXXXXXXXXXXXXEENHRAGRRRSPV--LATTSHGESTAPTGDEGDRSNGGGPSRXXXXXXXXXXXXXXXXXAGXSPSRKTTSGAPTGAQRXXXXXXGIDSKEALEAALLTLPPEEREKSRWTLTA 463          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3858.10088.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHI7_ECTSI3.720e-2640.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHK5_9PHAE1.060e-1532.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013930RNA polymerase II-associated protein 1, N-terminalPFAMPF08621RPAP1_Ncoord: 255..299
e-value: 1.5E-15
score: 56.6
IPR039913RNA polymerase II-associated protein RPAP1/Rba50PANTHERPTHR21483FAMILY NOT NAMEDcoord: 142..301

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3858contigH-paniculata_contig3858:1192..5943 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3858.10088.1mRNA_H-paniculata_contig3858.10088.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3858 1192..5943 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3858.10088.1 ID=prot_H-paniculata_contig3858.10088.1|Name=mRNA_H-paniculata_contig3858.10088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=484bp
ENYCVIHSISKQYRGGGYDHTIMLSRRDTGGVARPGRGEVDLEALQDAFF
RDNLQPSAKVTRSKPPTIKTKDKSVTTTEGENLKIGGIVERAAPPAPRPI
STITSTNATATLPGGSITSSPPSPPLPLRAPAGGMVPNAPGVVSNVTERA
VRAPAPMKISVGGGGGVGKGRFGGVMAPKGGTAASFSVGGFPAVRHRSEM
GTVRLGGAGASKRQQPPQDAASPNSRADPSAATHTANTRLRNSSGRNNSP
GGVQEDIHQENLARVLSMSPQEVEEAQQEIFSTLSPASLDLLRRRGRAQA
TGSNPSGGRNRCVGAATAGGNGDGDPQTGEIIGAPSSVRGVTVTAGDSLC
ESDAPDVVQTPASALPITSDDDTMAAAGHTDRKSRDDPPSDIWRSSAAGP
AGGAPTGAQRAATRAGGIDSEESLAAALQYLPWEERVKSSWTVSVSEAGT
RNDDQGGGGGGFGKEVVRVDLDGVPVGSGVVVSA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013930RNA_pol_II_AP1_N
IPR039913RPAP1/Rba50