prot_H-paniculata_contig38248.10023.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig38248.10023.1
Unique Nameprot_H-paniculata_contig38248.10023.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length58
Homology
BLAST of mRNA_H-paniculata_contig38248.10023.1 vs. uniprot
Match: D7G846_ECTSI (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G846_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 8.270e-25
Identity = 48/57 (84.21%), Postives = 54/57 (94.74%), Query Frame = 0
Query:    2 VDNHETWNASVVYGDTDSLFIELPGRSLKEAHRIGREMASAVSRSCPPDVVLKFEKV 58
            VDNH+TW ASVVYGDTDSLFIEL GRSL++AHRIG+EMA+ VS+SCPPDVVLKFEKV
Sbjct: 2716 VDNHKTWQASVVYGDTDSLFIELKGRSLEDAHRIGKEMATTVSKSCPPDVVLKFEKV 2772          
BLAST of mRNA_H-paniculata_contig38248.10023.1 vs. uniprot
Match: A0A6H5L0N9_9PHAE (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N9_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.870e-24
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 0
Query:    2 VDNHETWNASVVYGDTDSLFIELPGRSLKEAHRIGREMASAVSRSCPPDVVLKFEKV 58
            VD H+TW ASVVYGDTDSLFIEL GRSL+EAHRIG+EMA+ VS+SCPPDVVLKFEKV
Sbjct: 2592 VDTHKTWQASVVYGDTDSLFIELKGRSLEEAHRIGKEMATTVSQSCPPDVVLKFEKV 2648          
BLAST of mRNA_H-paniculata_contig38248.10023.1 vs. uniprot
Match: A0A835YMN6_9STRA (DNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMN6_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.780e-15
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 0
Query:    2 VDNHETWNASVVYGDTDSLFIELPGRSLKEAHRIGREMASAVSRSCPPDVVLKFEKV 58
            V++H  W A VVYGDTDSLF+ L GRS +EA R+G+E+A+AV+RS PP VVLK EKV
Sbjct:  435 VESHPPWGARVVYGDTDSLFVLLEGRSTEEAFRVGKEIAAAVTRSNPPAVVLKLEKV 491          
BLAST of mRNA_H-paniculata_contig38248.10023.1 vs. uniprot
Match: A0A0H5C398_CYBJN (DNA polymerase n=2 Tax=Cyberlindnera jadinii (strain ATCC 18201 / CBS 1600 / BCRC 20928 / JCM 3617 / NBRC 0987 / NRRL Y-1542) TaxID=983966 RepID=A0A0H5C398_CYBJN)

HSP 1 Score: 78.2 bits (191), Expect = 1.790e-15
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 0
Query:    2 VDNHETWNASVVYGDTDSLFIELPGRSLKEAHRIGREMASAVSRSCPPDVVLKFEKV 58
            ++   +W A VVYGDTDSLF+ LPGRS+++A RIG EMASAV++S P  V LKFEKV
Sbjct: 1061 IETEPSWGAKVVYGDTDSLFVYLPGRSMEDAFRIGNEMASAVTKSNPDPVTLKFEKV 1117          
BLAST of mRNA_H-paniculata_contig38248.10023.1 vs. uniprot
Match: UPI001CB94215 (DNA polymerase zeta catalytic subunit n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB94215)

HSP 1 Score: 77.8 bits (190), Expect = 2.450e-15
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 0
Query:    2 VDNHETWNASVVYGDTDSLFIELPGRSLKEAHRIGREMASAVSRSCPPDVVLKFEKV 58
            V+ H+ W A V+YGDTDS+F+ LPGRS+ EAH+IG E+ASAV++  P  VVLK EKV
Sbjct: 1374 VNTHDKWKAKVIYGDTDSMFVLLPGRSVSEAHQIGNEIASAVTKMNPNPVVLKMEKV 1430          
BLAST of mRNA_H-paniculata_contig38248.10023.1 vs. uniprot
Match: A0A7R9TCY2_MICPS (DNA-directed DNA polymerase (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TCY2_MICPS)

HSP 1 Score: 76.3 bits (186), Expect = 7.690e-15
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 0
Query:    8 WNASVVYGDTDSLFIELPGRSLKEAHRIGREMASAVSRSCPPDVVLKFEKV 58
            WN  VVYGDTDSLF+ +PGRS++EAH IG E+A+AV+ + PP VVLK EKV
Sbjct:   82 WNCRVVYGDTDSLFVHMPGRSVREAHAIGAEIAAAVTAANPPPVVLKLEKV 132          
BLAST of mRNA_H-paniculata_contig38248.10023.1 vs. uniprot
Match: C1MWK9_MICPC (DNA polymerase (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MWK9_MICPC)

HSP 1 Score: 76.3 bits (186), Expect = 8.490e-15
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 0
Query:    8 WNASVVYGDTDSLFIELPGRSLKEAHRIGREMASAVSRSCPPDVVLKFEKV 58
            WN  VVYGDTDSLF+ +PGRS++EAH IG E+A+AV+ + PP VVLK EKV
Sbjct:  436 WNCRVVYGDTDSLFVHMPGRSVREAHAIGAEIAAAVTAANPPPVVLKLEKV 486          
BLAST of mRNA_H-paniculata_contig38248.10023.1 vs. uniprot
Match: A0A1E3P2H2_WICAA (DNA polymerase n=1 Tax=Wickerhamomyces anomalus (strain ATCC 58044 / CBS 1984 / NCYC 433 / NRRL Y-366-8) TaxID=683960 RepID=A0A1E3P2H2_WICAA)

HSP 1 Score: 76.3 bits (186), Expect = 8.520e-15
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 0
Query:    2 VDNHETWNASVVYGDTDSLFIELPGRSLKEAHRIGREMASAVSRSCPPDVVLKFEKV 58
            ++N  +W A VVYGDTDSLF+ LPGRS  +A +IG+EMA AV++S P  V LKFEKV
Sbjct: 1030 IENEASWGAKVVYGDTDSLFVYLPGRSRDDAFKIGKEMADAVTKSNPDPVTLKFEKV 1086          
BLAST of mRNA_H-paniculata_contig38248.10023.1 vs. uniprot
Match: A0A383VJ50_TETOB (DNA polymerase zeta catalytic subunit n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VJ50_TETOB)

HSP 1 Score: 75.9 bits (185), Expect = 1.170e-14
Identity = 37/57 (64.91%), Postives = 42/57 (73.68%), Query Frame = 0
Query:    2 VDNHETWNASVVYGDTDSLFIELPGRSLKEAHRIGREMASAVSRSCPPDVVLKFEKV 58
            V+ H  W A VVYGDTDSLF+ LPGRS  EAHRIG E+A+AV+ S P  V LK EKV
Sbjct: 3176 VEEHPGWRARVVYGDTDSLFVALPGRSRAEAHRIGAEIAAAVTASNPRPVTLKLEKV 3232          
BLAST of mRNA_H-paniculata_contig38248.10023.1 vs. uniprot
Match: A0A7T8KGZ2_CALRO (DNA polymerase n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8KGZ2_CALRO)

HSP 1 Score: 70.5 bits (171), Expect = 1.400e-14
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 0
Query:    2 VDNHETWNASVVYGDTDSLFIELPGRSLKEAHRIGREMASAVSRSCPPDVVLKFEKV 58
            +++H +WNA VVYGDTDS+F+ L GRS +EA  +G EMA AV+   P  V LKFEKV
Sbjct:   20 IESHPSWNARVVYGDTDSVFVLLKGRSKEEAFNLGEEMAKAVTLDNPKPVKLKFEKV 76          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38248.10023.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G846_ECTSI8.270e-2584.21DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
A0A6H5L0N9_9PHAE2.870e-2484.21DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
A0A835YMN6_9STRA1.780e-1564.91DNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A0H5C398_CYBJN1.790e-1563.16DNA polymerase n=2 Tax=Cyberlindnera jadinii (stra... [more]
UPI001CB942152.450e-1561.40DNA polymerase zeta catalytic subunit n=1 Tax=Erig... [more]
A0A7R9TCY2_MICPS7.690e-1566.67DNA-directed DNA polymerase (Fragment) n=1 Tax=Mic... [more]
C1MWK9_MICPC8.490e-1566.67DNA polymerase (Fragment) n=1 Tax=Micromonas pusil... [more]
A0A1E3P2H2_WICAA8.520e-1561.40DNA polymerase n=1 Tax=Wickerhamomyces anomalus (s... [more]
A0A383VJ50_TETOB1.170e-1464.91DNA polymerase zeta catalytic subunit n=1 Tax=Tetr... [more]
A0A7T8KGZ2_CALRO1.400e-1457.89DNA polymerase n=1 Tax=Caligus rogercresseyi TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023211DNA polymerase, palm domain superfamilyGENE3D3.90.1600.10coord: 1..58
e-value: 4.8E-15
score: 57.8
IPR006134DNA-directed DNA polymerase, family B, multifunctional domainPFAMPF00136DNA_pol_Bcoord: 6..58
e-value: 1.8E-12
score: 46.7
IPR030559DNA polymerase zeta catalytic subunitPANTHERPTHR45812FAMILY NOT NAMEDcoord: 2..58
IPR017964DNA-directed DNA polymerase, family B, conserved sitePROSITEPS00116DNA_POLYMERASE_Bcoord: 14..22
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 4..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38248contigH-paniculata_contig38248:1742..1915 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38248.10023.1mRNA_H-paniculata_contig38248.10023.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig38248 1742..1915 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig38248.10023.1 ID=prot_H-paniculata_contig38248.10023.1|Name=mRNA_H-paniculata_contig38248.10023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
QVDNHETWNASVVYGDTDSLFIELPGRSLKEAHRIGREMASAVSRSCPPD
VVLKFEKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023211DNA_pol_palm_dom_sf
IPR006134DNA-dir_DNA_pol_B_multi_dom
IPR030559PolZ_Rev3
IPR017964DNA-dir_DNA_pol_B_CS