prot_H-paniculata_contig37774.9917.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig37774.9917.1
Unique Nameprot_H-paniculata_contig37774.9917.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length186
Homology
BLAST of mRNA_H-paniculata_contig37774.9917.1 vs. uniprot
Match: A0A8F0F7K4_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7K4_9PHAE)

HSP 1 Score: 343 bits (881), Expect = 3.680e-119
Identity = 170/185 (91.89%), Postives = 180/185 (97.30%), Query Frame = 0
Query:    1 MSIKSNDLIKRDIVTGSRRFSNYFWVIILFLGGLAFLIAGISSYFQKNFLPFIDSFELSFLPQGLVMTFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVYPFNNIKSIKLNIQDGINPKRVIYLCTKDKREIPLTPVEQPRSLELLENEASDLARFLNINLEGL 185
            MSIKSN+LIKRDIV GSRR SNYFW +ILF+GGLAFLI GISSYFQ+NFLPFI+SFELSFLPQGLVMTFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQ+EL+RIVR+GFPGKNRQILLVY FNNIKSIKLNIQDGINPKRVIYLCTKD+REIPLTPVEQPRSLELLENEAS+LARFLNINLEGL
Sbjct:    1 MSIKSNELIKRDIVIGSRRISNYFWTVILFIGGLAFLITGISSYFQRNFLPFINSFELSFLPQGLVMTFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQTELVRIVRKGFPGKNRQILLVYSFNNIKSIKLNIQDGINPKRVIYLCTKDQREIPLTPVEQPRSLELLENEASNLARFLNINLEGL 185          
BLAST of mRNA_H-paniculata_contig37774.9917.1 vs. uniprot
Match: A0A6G6D7G8_ECTSI (Photosystem I assembly protein Ycf4 n=32 Tax=Phaeophyceae TaxID=2870 RepID=A0A6G6D7G8_ECTSI)

HSP 1 Score: 319 bits (818), Expect = 1.330e-109
Identity = 157/181 (86.74%), Postives = 169/181 (93.37%), Query Frame = 0
Query:    5 SNDLIKRDIVTGSRRFSNYFWVIILFLGGLAFLIAGISSYFQKNFLPFIDSFELSFLPQGLVMTFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVYPFNNIKSIKLNIQDGINPKRVIYLCTKDKREIPLTPVEQPRSLELLENEASDLARFLNINLEGL 185
            SN+L+KRDIV GSRRFSN+FW  ILF GGL FL+ GISSYFQKN L FI+S ELSFLPQGLVMTFYGVV +SLSIYIGLTIFWD+GSGYNEFDKQ+ELIRIVRRGFPGKNRQILLVY F NIKSIKLNIQDGINPKR+IYLCTKD+REIPLTPVEQPRSLE+LENEAS+LARFLNINLEGL
Sbjct:    2 SNNLLKRDIVVGSRRFSNFFWTFILFFGGLGFLLTGISSYFQKNLLFFINSTELSFLPQGLVMTFYGVVGISLSIYIGLTIFWDVGSGYNEFDKQNELIRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRIIYLCTKDQREIPLTPVEQPRSLEVLENEASELARFLNINLEGL 182          
BLAST of mRNA_H-paniculata_contig37774.9917.1 vs. uniprot
Match: A0A1L2F1V9_9PHAE (Photosystem I assembly protein Ycf4 n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1V9_9PHAE)

HSP 1 Score: 314 bits (804), Expect = 2.080e-107
Identity = 152/186 (81.72%), Postives = 172/186 (92.47%), Query Frame = 0
Query:    1 MSIKS-NDLIKRDIVTGSRRFSNYFWVIILFLGGLAFLIAGISSYFQKNFLPFIDSFELSFLPQGLVMTFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVYPFNNIKSIKLNIQDGINPKRVIYLCTKDKREIPLTPVEQPRSLELLENEASDLARFLNINLEGL 185
            MS++    L+KRDIV GSRRFSNYFW IILFLGGL FLIAGISSYFQKN L FI+S +LSFLPQG++MTFYGV+A+ LS YIGLTIFWD+GSGYNEFDK++EL+RIVRRGFPGKNR+ILLVY F N+KSIKLNIQDG+NPKR+IYLCTKD+REIPLTPVEQPRSLE+LENEAS+LARFLNINLEGL
Sbjct:    1 MSVEDIGSLLKRDIVVGSRRFSNYFWTIILFLGGLGFLIAGISSYFQKNLLGFINSEQLSFLPQGVIMTFYGVIAIGLSFYIGLTIFWDVGSGYNEFDKENELVRIVRRGFPGKNRKILLVYQFRNLKSIKLNIQDGLNPKRIIYLCTKDQREIPLTPVEQPRSLEILENEASELARFLNINLEGL 186          
BLAST of mRNA_H-paniculata_contig37774.9917.1 vs. uniprot
Match: A0A8F0F7W7_AKKLU (Photosystem I assembly protein Ycf4 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F7W7_AKKLU)

HSP 1 Score: 313 bits (802), Expect = 4.190e-107
Identity = 155/180 (86.11%), Postives = 164/180 (91.11%), Query Frame = 0
Query:    6 NDLIKRDIVTGSRRFSNYFWVIILFLGGLAFLIAGISSYFQKNFLPFIDSFELSFLPQGLVMTFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVYPFNNIKSIKLNIQDGINPKRVIYLCTKDKREIPLTPVEQPRSLELLENEASDLARFLNINLEGL 185
            N  IKRD+V GSRRFSNYFW ++LF GG  FL+ GISSYFQKN L FI+S ELSFLPQGLVMTFYGVVA+SLSIYI LTIFWDIGSGYNEFDK+ ELIRIVRRGFPGKNRQILLVY F NIKSIKLNIQDGINPKRVIYLCTKD+REIPLTPVEQPRSLE LENEAS+LARFLNINLEGL
Sbjct:    7 NPFIKRDVVVGSRRFSNYFWALVLFFGGAGFLLTGISSYFQKNLLFFINSTELSFLPQGLVMTFYGVVAISLSIYIALTIFWDIGSGYNEFDKRDELIRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRVIYLCTKDQREIPLTPVEQPRSLETLENEASELARFLNINLEGL 186          
BLAST of mRNA_H-paniculata_contig37774.9917.1 vs. uniprot
Match: A0A2I4Q2G9_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2G9_9PHAE)

HSP 1 Score: 308 bits (790), Expect = 2.920e-105
Identity = 145/178 (81.46%), Postives = 169/178 (94.94%), Query Frame = 0
Query:    8 LIKRDIVTGSRRFSNYFWVIILFLGGLAFLIAGISSYFQKNFLPFIDSFELSFLPQGLVMTFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVYPFNNIKSIKLNIQDGINPKRVIYLCTKDKREIPLTPVEQPRSLELLENEASDLARFLNINLEGL 185
            +IKRDI+ GSRRFSN FW IILFLGG+ FL+ GIS+Y+QKNFLPF+++ +LSFLPQGL+MTFYG++ LSLS++I LTIFWD+GSGYNEF+KQ+ELIRIVRRGFPGKNR+ILLVYPFNNIKSIKLNIQ+GINPKR+IYLCTKD+REIPLTPVEQPRSL+LLENEAS+LARFLNI LEGL
Sbjct:   10 IIKRDIIIGSRRFSNLFWAIILFLGGVGFLLTGISTYYQKNFLPFVNTADLSFLPQGLIMTFYGIIGLSLSLFISLTIFWDVGSGYNEFNKQTELIRIVRRGFPGKNRKILLVYPFNNIKSIKLNIQEGINPKRIIYLCTKDEREIPLTPVEQPRSLKLLENEASNLARFLNIKLEGL 187          
BLAST of mRNA_H-paniculata_contig37774.9917.1 vs. uniprot
Match: A0A8E6D5U2_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D5U2_9PHAE)

HSP 1 Score: 308 bits (790), Expect = 2.920e-105
Identity = 150/185 (81.08%), Postives = 166/185 (89.73%), Query Frame = 0
Query:    1 MSIKSNDLIKRDIVTGSRRFSNYFWVIILFLGGLAFLIAGISSYFQKNFLPFIDSFELSFLPQGLVMTFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVYPFNNIKSIKLNIQDGINPKRVIYLCTKDKREIPLTPVEQPRSLELLENEASDLARFLNINLEGL 185
            MS  +N+L+KRDI+ GSRRFSNYFW  IL LGGL FL+AG+SSYF+KNFLPF +S EL+F+PQGLVMTFYGVVA+SLSIYI LTI WD+G GYNEFDK  ELIRIVRRGFPGKNRQILLVY F NIKSIKLNIQDGINPKR+IYLCTKDKREIPLTPVEQPR L +LE EAS+LA+FLNINLEGL
Sbjct:    3 MSKITNNLLKRDIIIGSRRFSNYFWAFILLLGGLGFLLAGVSSYFKKNFLPFGNSIELNFVPQGLVMTFYGVVAISLSIYIALTILWDVGGGYNEFDKDKELIRIVRRGFPGKNRQILLVYSFQNIKSIKLNIQDGINPKRIIYLCTKDKREIPLTPVEQPRPLNILETEASELAKFLNINLEGL 187          
BLAST of mRNA_H-paniculata_contig37774.9917.1 vs. uniprot
Match: A0A344PFE2_9PHAE (Photosystem I assembly protein Ycf4 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PFE2_9PHAE)

HSP 1 Score: 305 bits (782), Expect = 4.070e-104
Identity = 147/181 (81.22%), Postives = 167/181 (92.27%), Query Frame = 0
Query:    5 SNDLIKRDIVTGSRRFSNYFWVIILFLGGLAFLIAGISSYFQKNFLPFIDSFELSFLPQGLVMTFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVYPFNNIKSIKLNIQDGINPKRVIYLCTKDKREIPLTPVEQPRSLELLENEASDLARFLNINLEGL 185
            S++L+KRDIV GSRRFSN+FW  ILF GGL F + G+ SYF+KNFL FI+S +L+FLPQGL+MTFYGVVA+SLSIYI LT+FWD+GSGYNEFDKQ+ELIRIVRRGFPGKNRQILLVY F NIKSIKLNIQDGINPKR+IYLCTKD+REIPLT VEQPRSLE+LENEAS+LARFLNINLEG+
Sbjct:    2 SDNLLKRDIVVGSRRFSNFFWAFILFFGGLGFFLTGVLSYFKKNFLFFINSNDLAFLPQGLIMTFYGVVAISLSIYISLTVFWDVGSGYNEFDKQNELIRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRIIYLCTKDQREIPLTAVEQPRSLEVLENEASELARFLNINLEGV 182          
BLAST of mRNA_H-paniculata_contig37774.9917.1 vs. uniprot
Match: Q2PQH1_FUCVE (Photosystem I assembly protein Ycf4 n=3 Tax=Fucaceae TaxID=3010 RepID=Q2PQH1_FUCVE)

HSP 1 Score: 299 bits (765), Expect = 1.820e-101
Identity = 143/180 (79.44%), Postives = 164/180 (91.11%), Query Frame = 0
Query:    6 NDLIKRDIVTGSRRFSNYFWVIILFLGGLAFLIAGISSYFQKNFLPFIDSFELSFLPQGLVMTFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVYPFNNIKSIKLNIQDGINPKRVIYLCTKDKREIPLTPVEQPRSLELLENEASDLARFLNINLEGL 185
            ++L+KRDI+ GSRRFSNYFW IILF GGL FLIAGISSY Q N L FIDS EL+FLPQGL+MTFYGV+A+SLS+YI LTIFWD+GSGYNEFDK+++L+RIVR GFPGKNR+ILLVY F N+KSIKL IQDGINPKR+IYLCTKD+REIPLTPVEQPR LE LEN+AS+LA+FLNINLEGL
Sbjct:    7 DNLLKRDIIIGSRRFSNYFWTIILFFGGLGFLIAGISSYLQNNILFFIDSKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNRKILLVYQFKNLKSIKLTIQDGINPKRIIYLCTKDQREIPLTPVEQPRPLESLENDASELAKFLNINLEGL 186          
BLAST of mRNA_H-paniculata_contig37774.9917.1 vs. uniprot
Match: A0A6B7IL95_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7IL95_9PHAE)

HSP 1 Score: 285 bits (729), Expect = 4.480e-94
Identity = 137/164 (83.54%), Postives = 153/164 (93.29%), Query Frame = 0
Query:    5 SNDLIKRDIVTGSRRFSNYFWVIILFLGGLAFLIAGISSYFQKNFLPFIDSFELSFLPQGLVMTFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVYPFNNIKSIKLNIQDGINPKRVIYLCTKDKREIPLTPVEQPRSLELLE 168
            S++L+KRDIV GSRRFSN+FW  +LF GGL FL+AGISSYFQKN + FI+S EL+FLPQGLVMTFYGVVA+SLS+YIGLTIFWD+GSGYNEFDKQ+ELIRIVRRGFPGKNRQILLVY F NIKSIKLNIQDGINPKR+IYLCTKD+REIPLTP EQPRSLE+LE
Sbjct:    2 SDNLLKRDIVVGSRRFSNFFWTFVLFFGGLGFLLAGISSYFQKNLIFFINSMELAFLPQGLVMTFYGVVAISLSLYIGLTIFWDVGSGYNEFDKQNELIRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRIIYLCTKDQREIPLTPFEQPRSLEVLE 165          
BLAST of mRNA_H-paniculata_contig37774.9917.1 vs. uniprot
Match: B7T212_VAULI (Photosystem I assembly protein Ycf4 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T212_VAULI)

HSP 1 Score: 269 bits (688), Expect = 9.410e-90
Identity = 130/185 (70.27%), Postives = 157/185 (84.86%), Query Frame = 0
Query:    1 MSIKSNDLIKRDIVTGSRRFSNYFWVIILFLGGLAFLIAGISSYFQKNFLPFIDSFELSFLPQGLVMTFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVYPFNNIKSIKLNIQDGINPKRVIYLCTKDKREIPLTPVEQPRSLELLENEASDLARFLNINLEGL 185
            M+ K  +LI+RDI+ GSRRFSNYFW +IL +GGL FL+AG SSY + N L F +  EL F+PQG+VMTFYGVVA+SLS YI LTI WD+G+GYNEF+K  EL+RI+R+GFPGKNRQILLVYPFNNIKSIKL IQDGINPKR+++LCTKD+R+IPL  VEQPRSL  LE +AS+LA+FL +NLEGL
Sbjct:    1 MNHKIKNLIRRDIILGSRRFSNYFWALILAIGGLGFLLAGFSSYSKINLLYFANPTELIFIPQGIVMTFYGVVAISLSFYITLTIIWDVGAGYNEFNKVDELVRIMRKGFPGKNRQILLVYPFNNIKSIKLTIQDGINPKRLLFLCTKDQRQIPLNQVEQPRSLLELETQASELAKFLEVNLEGL 185          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37774.9917.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F7K4_9PHAE3.680e-11991.89Photosystem I assembly protein Ycf4 n=1 Tax=Protoh... [more]
A0A6G6D7G8_ECTSI1.330e-10986.74Photosystem I assembly protein Ycf4 n=32 Tax=Phaeo... [more]
A0A1L2F1V9_9PHAE2.080e-10781.72Photosystem I assembly protein Ycf4 n=13 Tax=Sarga... [more]
A0A8F0F7W7_AKKLU4.190e-10786.11Photosystem I assembly protein Ycf4 n=1 Tax=Akkesi... [more]
A0A2I4Q2G9_9PHAE2.920e-10581.46Photosystem I assembly protein Ycf4 n=1 Tax=Dictyo... [more]
A0A8E6D5U2_9PHAE2.920e-10581.08Photosystem I assembly protein Ycf4 n=1 Tax=Ishige... [more]
A0A344PFE2_9PHAE4.070e-10481.22Photosystem I assembly protein Ycf4 n=4 Tax=Scytos... [more]
Q2PQH1_FUCVE1.820e-10179.44Photosystem I assembly protein Ycf4 n=3 Tax=Fucace... [more]
A0A6B7IL95_9PHAE4.480e-9483.54Photosystem I assembly protein Ycf4 n=1 Tax=Clados... [more]
B7T212_VAULI9.410e-9070.27Photosystem I assembly protein Ycf4 n=1 Tax=Vauche... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003359Photosystem I Ycf4, assemblyPFAMPF02392Ycf4coord: 9..184
e-value: 1.8E-78
score: 262.2
IPR003359Photosystem I Ycf4, assemblyHAMAPMF_00437Ycf4coord: 1..185
score: 38.728
NoneNo IPR availablePANTHERPTHR33288:SF4PHOTOSYSTEM I ASSEMBLY PROTEIN YCF4coord: 9..184
NoneNo IPR availablePANTHERPTHR33288FAMILY NOT NAMEDcoord: 9..184
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 65..89
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..45
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 90..185
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 46..64
NoneNo IPR availablePRODOMPD003698coord: 9..182
e-value: 2.0E-56
score: 552.0
NoneNo IPR availableTMHMMTMhelixcoord: 65..87
NoneNo IPR availableTMHMMTMhelixcoord: 23..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37774contigH-paniculata_contig37774:427..984 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37774.9917.1mRNA_H-paniculata_contig37774.9917.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig37774 424..984 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig37774.9917.1 ID=prot_H-paniculata_contig37774.9917.1|Name=mRNA_H-paniculata_contig37774.9917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp
MSIKSNDLIKRDIVTGSRRFSNYFWVIILFLGGLAFLIAGISSYFQKNFL
PFIDSFELSFLPQGLVMTFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQS
ELIRIVRRGFPGKNRQILLVYPFNNIKSIKLNIQDGINPKRVIYLCTKDK
REIPLTPVEQPRSLELLENEASDLARFLNINLEGL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003359PSI_Ycf4_assembly