prot_H-paniculata_contig3766.9896.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3766.9896.1
Unique Nameprot_H-paniculata_contig3766.9896.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length241
Homology
BLAST of mRNA_H-paniculata_contig3766.9896.1 vs. uniprot
Match: D8LD70_ECTSI (Condensin complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD70_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 2.380e-21
Identity = 65/133 (48.87%), Postives = 83/133 (62.41%), Query Frame = 0
Query:  107 VGADGVIVDDFEAEGLISADRRVEKISVNYARKAKRVDVRRLKGDLWRKIDAVVVKEKDKELAPAVPAPGSSGSMKVDNDTVGTAESGDDDLENEXXXXXXXKKEGAVDASLEKPTPEAEDVTFSHIVHDLAS 239
            V ADGV VD+FE +GL++A RRVEKISVNYA+KAKRVDVRRLKGDLWRKI+     +     A  V   G  G    +N + G  E  + D+E++       K E   +  + KP PE  D+TFS+IV D+AS
Sbjct:  665 VDADGVFVDNFEGQGLLAAGRRVEKISVNYAKKAKRVDVRRLKGDLWRKINTEFQSD-----AAVVDVDGGEGGGGAENPSEGEEEVENKDVESKSPADGGDKGEEEAE-DVVKPAPEVVDMTFSNIVCDVAS 791          
BLAST of mRNA_H-paniculata_contig3766.9896.1 vs. uniprot
Match: A0A6H5K552_9PHAE (Condensin complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K552_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 6.060e-18
Identity = 63/134 (47.01%), Postives = 82/134 (61.19%), Query Frame = 0
Query:  107 VGADGVIVDDFEAEGLISADRRVEKISVNYARKAKRVDVRRLKGDLWRKIDAVVVKEKDKELAPAVPAPGSSGSMKVDNDTVGTAESGDDDLENEXXXXXXXK-KEGAVDASLEKPTPEAEDVTFSHIVHDLAS 239
            V ADGV VD+FE +GL++A RRVEKISVNYA+KAKRVDVRRLKGDLW+KI+  +  + D  +       G  G+     + V        D+E++       K KE A D  + KP P   D+TFS+IV D+AS
Sbjct:  198 VDADGVFVDNFEGQGLLAAGRRVEKISVNYAKKAKRVDVRRLKGDLWQKINTKL--QSDAAVVDVYRDEGGGGAENRSEEEVENK-----DVESKSPADGGDKGKEEAED--VVKPAPGVVDMTFSNIVCDVAS 322          
BLAST of mRNA_H-paniculata_contig3766.9896.1 vs. uniprot
Match: A0A835Z1S3_9STRA (Condensin complex subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S3_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 6.680e-7
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 0
Query:  112 VIVDDFEAEGLISADRRVEKISVNYARKAKRVDVRRLKGDLWRKIDAVVVKEKDKELAPAVPAPGSSGS 180
            +I DDF++  L+ ADR VEK+ V YA +AK+VDVRRLK +LW+ IDAVV       ++P   AP +  S
Sbjct:  697 LIDDDFDSAKLLKADRVVEKVEVKYATRAKKVDVRRLKHNLWQHIDAVVPPPLPHGVSPLRTAPATPQS 765          
BLAST of mRNA_H-paniculata_contig3766.9896.1 vs. uniprot
Match: A0A2P4XE75_9STRA (Condensin complex subunit 2 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XE75_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.270e-5
Identity = 44/122 (36.07%), Postives = 64/122 (52.46%), Query Frame = 0
Query:  117 FEAEGLISADRRVEKISVNYARKAKRVDVRRLKGDLWRKIDAVVVKEKDKELAPAVPAPGSSGSMKVDNDTVGTAESGDDDLENEXXXXXXXKKEGAVDASLEKPTPEAEDVTFSHIVHDLA 238
            +  EGL+ ADR VEKI V+Y R AKRVDV++LKG +W  ++  VVK  D +   AV A  +  ++ ++       ESG    E E       KK+   D +LE         TF ++V ++A
Sbjct:  882 YSVEGLVQADRVVEKIGVHYERFAKRVDVKKLKGSIWDHLEKKVVKN-DNDAEAAVEADHADSAVAIN-------ESGKRPREQEVG-----KKDEDDDETLE--------TTFENVVENVA 982          
BLAST of mRNA_H-paniculata_contig3766.9896.1 vs. uniprot
Match: A0A225WHN4_9STRA (Condensin complex subunit 2 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WHN4_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.090e-5
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 0
Query:  117 FEAEGLISADRRVEKISVNYARKAKRVDVRRLKGDLWRKIDAVVVKEKDKELAPAVPAPGSSGSMKVDNDTVGTAESGDDD 197
            +  EGL+ ADR VEKI V+Y R AKRVDV++LKG +W  ++  V K  + +   +      SG    +++ V   ++GDD+
Sbjct:  587 YSVEGLVQADRVVEKIGVHYERFAKRVDVKKLKGSIWEHLETKVAKSGENDQTDSAVTINESGKRLRESE-VDEKDAGDDE 666          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3766.9896.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LD70_ECTSI2.380e-2148.87Condensin complex subunit 2 n=1 Tax=Ectocarpus sil... [more]
A0A6H5K552_9PHAE6.060e-1847.01Condensin complex subunit 2 n=1 Tax=Ectocarpus sp.... [more]
A0A835Z1S3_9STRA6.680e-749.28Condensin complex subunit 2 n=1 Tax=Tribonema minu... [more]
A0A2P4XE75_9STRA3.270e-536.07Condensin complex subunit 2 n=1 Tax=Phytophthora p... [more]
A0A225WHN4_9STRA4.090e-538.27Condensin complex subunit 2 n=1 Tax=Phytophthora m... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 191..211
NoneNo IPR availablePANTHERPTHR13108:SF9CONDENSIN COMPLEX SUBUNIT 2coord: 62..239
IPR022816Condensin complex subunit 2/barrenPFAMPF05786Cnd2coord: 48..203
e-value: 3.4E-14
score: 52.5
IPR022816Condensin complex subunit 2/barrenPANTHERPTHR13108FAMILY NOT NAMEDcoord: 62..239

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3766contigH-paniculata_contig3766:4102..16947 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3766.9896.1mRNA_H-paniculata_contig3766.9896.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3766 4101..16947 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3766.9896.1 ID=prot_H-paniculata_contig3766.9896.1|Name=mRNA_H-paniculata_contig3766.9896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=241bp
KDLGELFLRAGAFAKRGVAAETAATSGKQYRAGDLQGFHDSGKSIGGAHD
GDALRFDIGDGGYGGSDDFDDDDDDDTGSAGFHFALGGDDGAYGQGFNGE
AGGVVGVGADGVIVDDFEAEGLISADRRVEKISVNYARKAKRVDVRRLKG
DLWRKIDAVVVKEKDKELAPAVPAPGSSGSMKVDNDTVGTAESGDDDLEN
EQEKEEQEKKEGAVDASLEKPTPEAEDVTFSHIVHDLASEA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022816Condensin_barren_su2