prot_H-paniculata_contig3733.9837.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3733.9837.1
Unique Nameprot_H-paniculata_contig3733.9837.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length168
Homology
BLAST of mRNA_H-paniculata_contig3733.9837.1 vs. uniprot
Match: A0A6H5JUP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUP0_9PHAE)

HSP 1 Score: 277 bits (709), Expect = 5.740e-84
Identity = 132/167 (79.04%), Postives = 149/167 (89.22%), Query Frame = 0
Query:    2 DYVVHEDLGFCRYLAYEFLEDDEANPDEIVLEFEDDQISIPRGESHLLTRYRAADAARVPLSTVSDSDEWLRHKAKVQERVTKQAINVMDLYAKRARIEREPCRPDGPEMEEFCKGFKHEPTSDQVRCLTEIESDMVWRKVPMDRLLCGDVGFGKTEVALRAMFRRV 168
            DY+VHEDLGFCRYLA EF  D  ANPDEI+LEF D  + I + +S+LLTRYRAADAARVPLS VSD + WLRHK KVQERVTKQA+NVMDLYAKRAR+ER+PC+PDGPEM+EFCKGF H+PT DQ+RCLTEIE+DM+WRK+PMDRLLCGDVGFGKTEVALRAMFR V
Sbjct:  359 DYMVHEDLGFCRYLAPEFTPD--ANPDEILLEFSDMNLPIAKDQSYLLTRYRAADAARVPLSVVSDQNSWLRHKLKVQERVTKQAVNVMDLYAKRARVERDPCKPDGPEMDEFCKGFDHQPTKDQLRCLTEIENDMIWRKIPMDRLLCGDVGFGKTEVALRAMFRMV 523          
BLAST of mRNA_H-paniculata_contig3733.9837.1 vs. uniprot
Match: D8LDP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP5_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 1.420e-83
Identity = 129/165 (78.18%), Postives = 147/165 (89.09%), Query Frame = 0
Query:    4 VVHEDLGFCRYLAYEFLEDDEANPDEIVLEFEDDQISIPRGESHLLTRYRAADAARVPLSTVSDSDEWLRHKAKVQERVTKQAINVMDLYAKRARIEREPCRPDGPEMEEFCKGFKHEPTSDQVRCLTEIESDMVWRKVPMDRLLCGDVGFGKTEVALRAMFRRV 168
            +VHEDLGFCRYLA EF  D  ANP+EI+LEF D  + I + +S+LLTRYRAADAARVPLS VSD + WLRHK KVQERVTKQA+NVMDLYAKRAR+ER+PC+PDGPEM+EFCKGF H+PT DQ+RCLTEIE+DM+WRK+PMDRLLCGDVGFGKTEVALRAMFR V
Sbjct:    1 MVHEDLGFCRYLAPEFTPD--ANPEEILLEFSDMNLPIAKDQSYLLTRYRAADAARVPLSVVSDQNSWLRHKLKVQERVTKQAVNVMDLYAKRARVERDPCKPDGPEMDEFCKGFDHQPTKDQLRCLTEIENDMIWRKIPMDRLLCGDVGFGKTEVALRAMFRMV 163          
BLAST of mRNA_H-paniculata_contig3733.9837.1 vs. uniprot
Match: A0A835YLF5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLF5_9STRA)

HSP 1 Score: 179 bits (455), Expect = 6.920e-50
Identity = 90/167 (53.89%), Postives = 113/167 (67.66%), Query Frame = 0
Query:    2 DYVVHEDLGFCRYLAYEFLEDDEANPDEIVLEFEDDQISIPRGESHLLTRYRAADAARVPLSTVSDSDEWLRHKAKVQERVTKQAINVMDLYAKRARIEREPCRPDGPEMEEFCKGFKHEPTSDQVRCLTEIESDMVWRKVPMDRLLCGDVGFGKTEVALRAMFRRV 168
            DY+VHE++G CRY        + +  + I LEF D  + + R +S LLTR+RA D+  V LS  +D+  WLR K KV  +V  QA++VM LYA+RA   R PC PDGP+   FC  F H PT DQ RC+ EIE DMVWR+ PMDRLLCGDVGFGKTEVA+RA++R V
Sbjct:   21 DYLVHENIGVCRYKRAVTSVANGSEWEAIELEFADGVVEVARIDSRLLTRFRAGDSRGVKLSRYADASRWLRAKEKVATKVRAQAVDVMALYARRAGTARAPCAPDGPDYAAFCARFPHAPTPDQARCMEEIEQDMVWRQRPMDRLLCGDVGFGKTEVAMRAIYRAV 187          
BLAST of mRNA_H-paniculata_contig3733.9837.1 vs. uniprot
Match: A0A448ZCY1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZCY1_9STRA)

HSP 1 Score: 130 bits (328), Expect = 4.240e-32
Identity = 70/147 (47.62%), Postives = 95/147 (64.63%), Query Frame = 0
Query:   25 ANPDEIVLE--FEDDQISIPRGESHLLTRYRAADAARVPLSTVSDSDEWLRHKAKVQERVTKQAINVMDLYAKRARIEREPCRPDGP-EMEEFCKGFKHEPTSDQVRCLTEIESDMVWRKVPMDRLLCGDVGFGKTEVALRAMFRRV 168
            +NP   VLE  + D  + +P   ++ L+RYRA DAA  P  +    D+W   + KV+    + A +V+ LYA R  ++R+P  PD    +++F K FK EPT DQ +C  E+E+DMVWR  PMDRL+CGDVGFGKTEVALRA+FR V
Sbjct:  277 SNPQVTVLEITYADGIVHVPVDRAYRLSRYRAGDAAVKPRLSKVRGDQWRNARRKVEASTMELAQDVLALYATRETLQRQPFDPDKETRVKDFEKTFKFEPTKDQAKCFEEVENDMVWRSRPMDRLICGDVGFGKTEVALRALFRAV 423          
BLAST of mRNA_H-paniculata_contig3733.9837.1 vs. uniprot
Match: B7GBS8_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GBS8_PHATC)

HSP 1 Score: 130 bits (327), Expect = 5.690e-32
Identity = 68/147 (46.26%), Postives = 96/147 (65.31%), Query Frame = 0
Query:   25 ANPDEIVLE--FEDDQISIPRGESHLLTRYRAADAARVPLSTVSDSDEWLRHKAKVQERVTKQAINVMDLYAKRARIEREPCRPDGPEM-EEFCKGFKHEPTSDQVRCLTEIESDMVWRKVPMDRLLCGDVGFGKTEVALRAMFRRV 168
            +NP   VLE  + D  + +P   ++ L+RYRA DA   P  +    + W + K KV+E   + A +V+ LYA R  ++R+P  P   ++ +EF K F +EPT+DQ +C  EIE+DMVWR  PMDRL+CGDVGFGKTEVA+RA+FR +
Sbjct:  172 SNPQTTVLEITYADAVVHVPVDRAYRLSRYRAGDAVVKPKLSRVKGEAWSKAKQKVEENTLQLAQDVLALYATRETLQRQPFDPSVEDVVQEFSKSFLYEPTTDQKKCFEEIENDMVWRSRPMDRLICGDVGFGKTEVAIRALFRSI 318          
BLAST of mRNA_H-paniculata_contig3733.9837.1 vs. uniprot
Match: A0A7S3XMP5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMP5_HETAK)

HSP 1 Score: 129 bits (325), Expect = 1.020e-31
Identity = 72/169 (42.60%), Postives = 97/169 (57.40%), Query Frame = 0
Query:    2 DYVVHEDLGFCRYLAYEFLEDDEANPDEIVLEFEDDQISIPRGESHLLTRYRAADAA--RVPLSTVSDSDEWLRHKAKVQERVTKQAINVMDLYAKRARIEREPCRPDGPEMEEFCKGFKHEPTSDQVRCLTEIESDMVWRKVPMDRLLCGDVGFGKTEVALRAMFRRV 168
            D +VH + G CR+         +A     +L+F D Q+++P G++ LLTRY++ + A     L+  +    W     K +    K A ++M LYA R    REPC PDG EM  F  GF  +PT DQ      +  DMVWRK PMDRL+CGDVGFGKTEVA+RA++R V
Sbjct:  128 DLLVHRNHGLCRFEQAVGQRTGDARRKGFLLQFADQQVTLPLGQAELLTRYKSREQAGENPKLAKFTGRRGWSTKLQKAKLHTDKLAKDIMMLYADRDGRYREPCLPDGEEMWAFEAGFHFQPTPDQRTAFEAVMKDMVWRKRPMDRLICGDVGFGKTEVAMRAIYRAV 296          
BLAST of mRNA_H-paniculata_contig3733.9837.1 vs. uniprot
Match: A0A7S4AXJ3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AXJ3_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.010e-31
Identity = 68/147 (46.26%), Postives = 95/147 (64.63%), Query Frame = 0
Query:   25 ANPDEIVLE--FEDDQISIPRGESHLLTRYRAADAARVPLSTVSDSDEWLRHKAKVQERVTKQAINVMDLYAKRARIEREPCRPDGP-EMEEFCKGFKHEPTSDQVRCLTEIESDMVWRKVPMDRLLCGDVGFGKTEVALRAMFRRV 168
            +NP   VLE  + D  + +P   ++ L+RYRA DAA  P  +    D+W   + KV+    + A +V+ LYA R  ++R P  PD   +++EF K F +EPT DQ +C  ++E+DMVWR  PMDRL+CGDVGFGKTEVALRA++R V
Sbjct:  361 SNPQVTVLEITYADGIVHVPVDRAYRLSRYRAGDAAVKPRLSKVRGDQWRNARRKVEASTLELAQDVLALYATRETLQRPPFNPDNEYKVKEFEKTFTYEPTKDQAKCFEDVENDMVWRPRPMDRLICGDVGFGKTEVALRALYRSV 507          
BLAST of mRNA_H-paniculata_contig3733.9837.1 vs. uniprot
Match: A0A1E7FE91_9STRA (p-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FE91_9STRA)

HSP 1 Score: 127 bits (318), Expect = 4.890e-31
Identity = 64/136 (47.06%), Postives = 91/136 (66.91%), Query Frame = 0
Query:   34 FEDDQISIPRGESHLLTRYRAADAARVPLSTVSDSDEWLRHKAKVQERVTKQAINVMDLYAKRARIEREPCRPDGP-EMEEFCKGFKHEPTSDQVRCLTEIESDMVWRKVPMDRLLCGDVGFGKTEVALRAMFRRV 168
            + D  + +P   ++ L+RYRA DAA  P  +    D+W   + KV+    + A +V+ LYA R  ++R+P  PD   +++EF K F+ EPTSDQ +C  ++E+DMVWR  PMDRL+CGDVGFGKTEVA+RA+FR V
Sbjct:    5 YADGIVHVPVDRAYRLSRYRAGDAAVKPRLSKVRGDQWRNARKKVEASTLELAQDVLALYATRETLQRQPFDPDNEGKVKEFEKTFRFEPTSDQNKCFEDVENDMVWRSRPMDRLICGDVGFGKTEVAIRALFRTV 140          
BLAST of mRNA_H-paniculata_contig3733.9837.1 vs. uniprot
Match: B8CG58_THAPS (CarD_TRCF domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CG58_THAPS)

HSP 1 Score: 118 bits (295), Expect = 1.330e-30
Identity = 60/138 (43.48%), Postives = 85/138 (61.59%), Query Frame = 0
Query:   32 LEFEDDQISIPRGESHLLTRYRAADAARVPLSTVSDSDEWLRHKAKVQERVTKQAINVMDLYAKRARIEREPCRPD-GPEMEEFCKGFKHEPTSDQVRCLTEIESDMVWRKVPMDRLLCGDVGFGKTEVALRAMFRRV 168
            + + D  + +P   ++ L+RYRA DAA  P  +    + W + K KV+    + A +V+ LYA R  + R P  P    +++ F   F  EPT DQ +C  ++E+DMVWR  PMDRL+CGDVGFGKTEVA+RA+FR V
Sbjct:    7 ISYSDAVVHVPIERAYRLSRYRAGDAAIKPRLSRVKGEAWSKAKRKVEANTVQMAEDVLALYATRETLNRSPFDPSLEGKVKTFATSFPFEPTPDQKKCFEDVENDMVWRSRPMDRLICGDVGFGKTEVAMRALFRAV 144          
BLAST of mRNA_H-paniculata_contig3733.9837.1 vs. uniprot
Match: A0A3D5R5R7_9FIRM (Transcription-repair-coupling factor n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=A0A3D5R5R7_9FIRM)

HSP 1 Score: 123 bits (309), Expect = 1.530e-29
Identity = 68/168 (40.48%), Postives = 104/168 (61.90%), Query Frame = 0
Query:    2 DYVVHEDLGFCRYLAYEFLEDDEANPDEIVLEFE-DDQISIPRGESHLLTRYRAADAARVPLSTVSDSDEWLRHKAKVQERVTKQAINVMDLYAKRARIEREPCRPDGPEMEEFCKGFKHEPTSDQVRCLTEIESDMVWRKVPMDRLLCGDVGFGKTEVALRAMFRRV 168
            DYVVHE  G  +Y+  E +E  E   D + +E+  +D++ +P  +  L+ +Y  +D+ +  ++ +  S EW++ KAK Q+ +      +++LYAKR  IE      D    +EF + F +E T DQ+RC+ EI+ DM   K PMDRLLCGDVGFGKTEVA+R++F+ V
Sbjct:  505 DYVVHEHHGIGKYIGIEKIEVKEITKDYLTIEYRGNDKLFVPVDQMDLVQKYIGSDSEKPRINKMGGS-EWIKKKAKAQKAIEDMTDELLELYAKRKSIEGYAFSEDSEWQKEFEEEFPYEETDDQLRCVEEIKEDME-SKTPMDRLLCGDVGFGKTEVAIRSIFKAV 670          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3733.9837.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUP0_9PHAE5.740e-8479.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDP5_ECTSI1.420e-8378.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YLF5_9STRA6.920e-5053.89P-loop containing nucleoside triphosphate hydrolas... [more]
A0A448ZCY1_9STRA4.240e-3247.62Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
B7GBS8_PHATC5.690e-3246.26Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S3XMP5_HETAK1.020e-3142.60Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4AXJ3_9STRA2.010e-3146.26Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A1E7FE91_9STRA4.890e-3147.06p-loop containing nucleoside triphosphate hydrolas... [more]
B8CG58_THAPS1.330e-3043.48CarD_TRCF domain-containing protein (Fragment) n=1... [more]
A0A3D5R5R7_9FIRM1.530e-2940.48Transcription-repair-coupling factor n=1 Tax=Clost... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003711CarD-like/TRCF domainSMARTSM01058CarD_TRCF_2coord: 2..94
e-value: 1.0E-5
score: 29.3
IPR003711CarD-like/TRCF domainPFAMPF02559CarD_CdnL_TRCFcoord: 2..93
e-value: 3.2E-10
score: 40.6
IPR036101CarD-like/TRCF domain superfamilyGENE3D2.30.30.840coord: 2..57
e-value: 1.3E-7
score: 33.7
IPR036101CarD-like/TRCF domain superfamilySUPERFAMILY141259CarD-likecoord: 2..63
NoneNo IPR availableGENE3D3.40.50.300coord: 62..168
e-value: 6.9E-22
score: 79.9
NoneNo IPR availablePANTHERPTHR14025FAMILY NOT NAMEDcoord: 2..166
NoneNo IPR availablePANTHERPTHR14025:SF29TRANSCRIPTION-REPAIR-COUPLING FACTORcoord: 2..166
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 74..167

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3733contigH-paniculata_contig3733:8144..17138 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3733.9837.1mRNA_H-paniculata_contig3733.9837.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3733 8144..17138 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3733.9837.1 ID=prot_H-paniculata_contig3733.9837.1|Name=mRNA_H-paniculata_contig3733.9837.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=168bp
MDYVVHEDLGFCRYLAYEFLEDDEANPDEIVLEFEDDQISIPRGESHLLT
RYRAADAARVPLSTVSDSDEWLRHKAKVQERVTKQAINVMDLYAKRARIE
REPCRPDGPEMEEFCKGFKHEPTSDQVRCLTEIESDMVWRKVPMDRLLCG
DVGFGKTEVALRAMFRRV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003711CarD-like/TRCF_domain
IPR036101CarD-like/TRCF_dom_sf
IPR027417P-loop_NTPase