prot_H-paniculata_contig3731.9832.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3731.9832.1
Unique Nameprot_H-paniculata_contig3731.9832.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length178
Homology
BLAST of mRNA_H-paniculata_contig3731.9832.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC)

HSP 1 Score: 139 bits (351), Expect = 3.210e-38
Identity = 72/173 (41.62%), Postives = 104/173 (60.12%), Query Frame = 0
Query:    1 CSTCERGKSSNQPLNNYREEQMAELLEPLHTDIAGPVD-ESFEGHRFVIIFMDDYSRMRKVYALRHRSEALWVLEQFERDIATG----NGLQIKPLRSDQGGEFTGEAFRQFCVENSIEQEFSAVYTPQQNGVAERSWRCVFEMNRSKMVTANMGRKYWAEAARAAMYCLNHA 168
            C+TCER K + +       E+  E LE +HTD+ GPV+ ES  G R+ I F DDY+R R VY ++H+S++L  L+++ +D+           ++ LRSD GGE+TG  F+ FC  + I Q+F   Y PQ NGVAE+SW  +  M RS  + A +G+ +WAEA   A Y LN +
Sbjct:   37 CATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDMNISFRDHKVNTLRGLRSDNGGEYTGVDFKNFCKNHGIRQDFGIPYGPQDNGVAEKSWHVLSNMARSLRIQAGLGKGFWAEALNTAAYILNRS 209          
BLAST of mRNA_H-paniculata_contig3731.9832.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA)

HSP 1 Score: 143 bits (361), Expect = 8.460e-37
Identity = 74/175 (42.29%), Postives = 105/175 (60.00%), Query Frame = 0
Query:    1 CSTCERGKSSNQPLNNYREEQMAELLEPLHTDIAGPVD-ESFEGHRFVIIFMDDYSRMRKVYALRHRSEALWVLEQFERDIATG----NGLQIKPLRSDQGGEFTGEAFRQFCVENSIEQEFSAVYTPQQNGVAERSWRCVFEMNRSKMVTANMGRKYWAEAARAAMYCLNHAST 170
            C TCER K + +       E+  E LE +HTD+ GPV+ ES  G R+ I F DDY+R R VY ++H+SE+L  L+++ +D+           ++ LRSD GGE+TG  F+ FC  + I Q+F   Y PQ NGVAE+SW  +  M RS  + A +G+++WAEA   A Y LN + T
Sbjct:   57 CGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRGLRSDNGGEYTGIDFKNFCKNHGIRQDFGIPYGPQDNGVAEKSWHVLSNMARSLRIQAGLGKRFWAEALNTAAYILNRSRT 231          
BLAST of mRNA_H-paniculata_contig3731.9832.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.370e-35
Identity = 70/173 (40.46%), Postives = 102/173 (58.96%), Query Frame = 0
Query:    1 CSTCERGKSSNQPLNNYREEQMAELLEPLHTDIAGPVD-ESFEGHRFVIIFMDDYSRMRKVYALRHRSEALWVLEQFERDIATG----NGLQIKPLRSDQGGEFTGEAFRQFCVENSIEQEFSAVYTPQQNGVAERSWRCVFEMNRSKMVTANMGRKYWAEAARAAMYCLNHA 168
            C TCER K + +       E+  E LE +HTD+ GPV+ ES  G R+ I F DDY+R R VY ++H+SE+L  L+++ +D+           ++ LRSD GGE+TG  F+ FC  + I Q+F   Y PQ NG+AE+SW  +  M R+  + A +G+ +WAEA   A Y  N +
Sbjct:   57 CGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRGLRSDNGGEYTGIDFKNFCKNHGIRQDFGMPYGPQDNGLAEKSWHILCNMARALRIQAGLGKGFWAEALNTAAYIWNRS 229          
BLAST of mRNA_H-paniculata_contig3731.9832.1 vs. uniprot
Match: W7T9C2_9STRA (Copia-like retrotransposable element (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9C2_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.100e-34
Identity = 72/175 (41.14%), Postives = 102/175 (58.29%), Query Frame = 0
Query:    1 CSTCERGKSSNQPLNNYREEQMAELLEPLHTDIAGPVD-ESFEGHRFVIIFMDDYSRMRKVYALRHRSEALWVLEQFERDIAT-GNGLQIKPL---RSDQGGEFTGEAFRQFCVENSIEQEFSAVYTPQQNGVAERSWRCVFEMNRSKMVTANMGRKYWAEAARAAMYCLNHAST 170
            C TCER K + +       E+  E LE +HTD+ GP++ ES  G R+ I F DDY+R R VY +R +SE+L  L+++ +D +      ++K L   RSD GGE+TG  F+ FC  + I Q+F   Y PQ N  AE+SW  +  M RS  + A +G+++WAEA   A Y LN   T
Sbjct:    5 CGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYTMRRKSESLDCLKRYIKDKSVLHRDRKMKTLIGLRSDNGGEYTGVDFKNFCKNHGIRQDFGIPYGPQDNSAAEKSWHVLSNMARSLRIQAGLGKRFWAEALTTATYILNRTRT 179          
BLAST of mRNA_H-paniculata_contig3731.9832.1 vs. uniprot
Match: A0A2K3KY79_TRIPR (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KY79_TRIPR)

HSP 1 Score: 138 bits (348), Expect = 1.240e-34
Identity = 73/171 (42.69%), Postives = 101/171 (59.06%), Query Frame = 0
Query:    1 CSTCERGKSSNQPLNNYREEQMAELLEPLHTDIAGPVDESFEGH-RFVIIFMDDYSRMRKVYALRHRSEALWVLEQFERDIATGNGLQIKPLRSDQGGEFTGEAFRQFCVENSIEQEFSAVYTPQQNGVAERSWRCVFEMNRSKMVTANMGRKYWAEAARAAMYCLNHAST 170
            C  C +GK     ++     + +E LE +H DI GP+    EG+ R+ I F+DDYSR   VY L ++S+A    + F+  +     L IK LR+D+GGEFT   F+++C  N I+++ +A YTPQQNGVAER  R V  M RS +V  N+ RK+WAEA   A Y LN   T
Sbjct:  163 CKNCLKGKQHRDVISRRSTWRASEKLELVHADICGPISPFSEGNKRYFICFIDDYSRKAWVYFLAYKSDAFTTFKLFKALVEKETDLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTAAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWAEAVNWAFYVLNRCPT 333          
BLAST of mRNA_H-paniculata_contig3731.9832.1 vs. uniprot
Match: A0A2Z6P4L8_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6P4L8_TRISU)

HSP 1 Score: 138 bits (348), Expect = 1.310e-34
Identity = 72/171 (42.11%), Postives = 101/171 (59.06%), Query Frame = 0
Query:    1 CSTCERGKSSNQPLNNYREEQMAELLEPLHTDIAGPVDESFEGH-RFVIIFMDDYSRMRKVYALRHRSEALWVLEQFERDIATGNGLQIKPLRSDQGGEFTGEAFRQFCVENSIEQEFSAVYTPQQNGVAERSWRCVFEMNRSKMVTANMGRKYWAEAARAAMYCLNHAST 170
            C+ C +GK     ++     + +E LE +H DI GP+    EG+ R+ I F+DDYSR   VY L ++S+A    + F+  +    GL IK LR+D+GGEFT   F+++C  N I+++ +  YTPQQNGVAER  R V  M RS +V  N+ RK+W EA   A Y LN   T
Sbjct:  467 CTNCLKGKQHRDVISRRSTWRASEKLELVHADICGPISPFSEGNKRYFICFIDDYSRKAWVYFLAYKSDAFTTFKLFKALVEKETGLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTVAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWVEAVNWAFYVLNRCPT 637          
BLAST of mRNA_H-paniculata_contig3731.9832.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 136 bits (342), Expect = 7.900e-34
Identity = 70/173 (40.46%), Postives = 102/173 (58.96%), Query Frame = 0
Query:    1 CSTCERGKSSNQPLNNYREEQMAELLEPLHTDIAGPVD-ESFEGHRFVIIFMDDYSRMRKVYALRHRSEALWVLEQFERDIATG----NGLQIKPLRSDQGGEFTGEAFRQFCVENSIEQEFSAVYTPQQNGVAERSWRCVFEMNRSKMVTANMGRKYWAEAARAAMYCLNHA 168
            C TCER K + +       E+  E LE +HTD+ GPV+ ES  G R+ I F DDY+R R VY ++H+SE+L  L+++ +D+           ++ LRSD GGE+TG  F+ FC  + I Q+F   Y PQ NG+AE+SW  +  M R+  + A +G+ +WAEA   A Y  N +
Sbjct:  103 CGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRGLRSDNGGEYTGVDFKNFCKNHGIRQDFGMPYGPQDNGLAEKSWHILCNMARALRIQAGLGKGFWAEALNTATYIWNRS 275          
BLAST of mRNA_H-paniculata_contig3731.9832.1 vs. uniprot
Match: A0A3S3RF48_9ACAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3RF48_9ACAR)

HSP 1 Score: 131 bits (330), Expect = 8.410e-33
Identity = 68/172 (39.53%), Postives = 97/172 (56.40%), Query Frame = 0
Query:    1 CSTCERGKSSNQPLNNYREEQMAELLEPLHTDIAGPVD-ESFEGHRFVIIFMDDYSRMRKVYALRHRSEALWVLEQFERDIATGNGLQIKPLRSDQGGEFTGEAFRQFCVENSIEQEFSAVYTPQQNGVAERSWRCVFEMNRSKMVTANMGRKYWAEAARAAMYCLNHASTR 171
            C  C +GK S +P  N    +  + L+ +HTD+ GP+  ++F G R+ + F+DDYSR    Y L H+SE      + E  +      +IK LRSD+G E+  + F  FC    I Q+F+A YTPQQNGVAER  R + E  R  +  A +  KYW EA + A+Y  N +ST+
Sbjct:  151 CEGCAKGKMSRRPFPNTSTNRSTKTLQLVHTDVCGPMQTKTFSGKRYFLTFIDDYSRFTVCYLLEHKSEVYDKFVECEALVTNMTSNRIKMLRSDEGCEYRSKKFNAFCKGKGIIQQFTASYTPQQNGVAERMNRTIVEAARCMLQAAQLDNKYWDEAVQTAVYLQNRSSTK 322          
BLAST of mRNA_H-paniculata_contig3731.9832.1 vs. uniprot
Match: A0A6D2JNB5_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JNB5_9BRAS)

HSP 1 Score: 124 bits (310), Expect = 1.440e-32
Identity = 62/167 (37.13%), Postives = 100/167 (59.88%), Query Frame = 0
Query:    1 CSTCERGKSSNQPLNNYREEQMAELLEPLHTDIAGPVDESFE-GHRFVIIFMDDYSRMRKVYALRHRSEALWVLEQFERDIATGNGLQIKPLRSDQGGEFTGEAFRQFCVENSIEQEFSAVYTPQQNGVAERSWRCVFEMNRSKMVTANMGRKYWAEAARAAMYCLN 166
            C  C +GK + + +    E +    L+ +H+DI GP+    E G R+++ F+DD+SR    Y L  +SEAL V ++F+  +    G ++  LR+D+GGE+  +AF  FC E  I+++ +A YTPQQNG+AER  R V  M R  ++  ++ R +W EA + A++ LN
Sbjct:   17 CEVCMKGKQNRESIPKKSEWKSTRGLQLVHSDICGPISPISESGKRYILNFIDDFSRKCWTYLLSEKSEALAVFKEFKAAVERELGEKLVCLRTDRGGEYNSKAFEAFCKETGIKRQLTAAYTPQQNGIAERKNRSVMNMTRCMLLEKSVPRSFWPEAVQYAVHILN 183          
BLAST of mRNA_H-paniculata_contig3731.9832.1 vs. uniprot
Match: A0A3S3NIE3_9ACAR (Uncharacterized protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3NIE3_9ACAR)

HSP 1 Score: 132 bits (331), Expect = 2.370e-32
Identity = 66/179 (36.87%), Postives = 102/179 (56.98%), Query Frame = 0
Query:    1 CSTCERGKSSNQPLNNYREEQMAELLEPLHTDIAGPVD-ESFEGHRFVIIFMDDYSRMRKVYALRHRSEALWVLEQFERDIATGNGLQIKPLRSDQGGEFTGEAFRQFCVENSIEQEFSAVYTPQQNGVAERSWRCVFEMNRSKMVTANMGRKYWAEAARAAMYCLNHASTRPHNGGMP 178
            C +C +GK++ +P     +    E+LE +H+D+ GP+   +  G R+ + F+D YSR  + Y L ++SEA  +  +++  +    G QIK  RSD G E+T + F ++ V+N I  +++A YTPQQNGVAER  R + EM RS +  A M + +W EA   A Y  N    +  NG  P
Sbjct:  230 CESCVKGKTTRKPFPKKSDSMTKEVLELVHSDVCGPMQTNTVSGRRYFVTFIDYYSRYTETYLLFNKSEAFEMFIEYKNKVEKSTGKQIKVFRSDNGTEYTCKRFEEYFVKNGIVHQYTAPYTPQQNGVAERKNRTLVEMARSMLFCAQMNKNFWGEAIVTATYIQNSCPNKALNGKTP 408          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3731.9832.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K8YS61_NANGC3.210e-3841.62Retrovirus-related pol polyprotein from transposon... [more]
W7TIQ5_9STRA8.460e-3742.29Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TGQ6_9STRA1.370e-3540.46Retrotransposon unclassified n=1 Tax=Nannochlorops... [more]
W7T9C2_9STRA1.100e-3441.14Copia-like retrotransposable element (Fragment) n=... [more]
A0A2K3KY79_TRIPR1.240e-3442.69Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
A0A2Z6P4L8_TRISU1.310e-3442.11Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
W7T174_9STRA7.900e-3440.46Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A3S3RF48_9ACAR8.410e-3339.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2JNB5_9BRAS1.440e-3237.13Integrase catalytic domain-containing protein n=1 ... [more]
A0A3S3NIE3_9ACAR2.370e-3236.87Uncharacterized protein (Fragment) n=1 Tax=Dinothr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 29..134
e-value: 1.4E-19
score: 70.4
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 9..178
score: 18.903
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 16..175
e-value: 3.1E-29
score: 103.6
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 24..162
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 24..162
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 25..172

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3731contigH-paniculata_contig3731:4983..5516 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3731.9832.1mRNA_H-paniculata_contig3731.9832.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3731 4983..5516 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3731.9832.1 ID=prot_H-paniculata_contig3731.9832.1|Name=mRNA_H-paniculata_contig3731.9832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=178bp
CSTCERGKSSNQPLNNYREEQMAELLEPLHTDIAGPVDESFEGHRFVIIF
MDDYSRMRKVYALRHRSEALWVLEQFERDIATGNGLQIKPLRSDQGGEFT
GEAFRQFCVENSIEQEFSAVYTPQQNGVAERSWRCVFEMNRSKMVTANMG
RKYWAEAARAAMYCLNHASTRPHNGGMP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf