prot_H-paniculata_contig37288.9826.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig37288.9826.1
Unique Nameprot_H-paniculata_contig37288.9826.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length99
Homology
BLAST of mRNA_H-paniculata_contig37288.9826.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 8.820e-27
Identity = 52/99 (52.53%), Postives = 67/99 (67.68%), Query Frame = 0
Query:    1 AGHRGVDATVNRLAAYCVWDGMEAKVAELVRQCLHCLDSRSGSRAPRPLGELLHGTEVGEVLRFDFPHLGASDPLKEHEVIR-EGCPYLLVLLDDVSGY 98
            AGHRGV AT++RL  YC W  M+  V E V+QCLHC+DS+SG   PRP GE +HG   GEVL FD+ H+G S PL    +   +G  YLLV++DD+S +
Sbjct:  427 AGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNF 525          
BLAST of mRNA_H-paniculata_contig37288.9826.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 9.240e-27
Identity = 52/99 (52.53%), Postives = 67/99 (67.68%), Query Frame = 0
Query:    1 AGHRGVDATVNRLAAYCVWDGMEAKVAELVRQCLHCLDSRSGSRAPRPLGELLHGTEVGEVLRFDFPHLGASDPLKEHEVIR-EGCPYLLVLLDDVSGY 98
            AGHRGV AT++RL  YC W  M+  V E V+QCLHC+DS+SG   PRP GE +HG   GEVL FD+ H+G S PL    +   +G  YLLV++DD+S +
Sbjct: 1203 AGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNF 1301          
BLAST of mRNA_H-paniculata_contig37288.9826.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 5.070e-17
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 0
Query:   22 MEAKVAELVRQCLHCLDSRSGSRAPRPLGELLHGTEVGEVLRFDFPHLGASDPLKEHEVIR-EGCPYLLVLLDDVSGY 98
            M+  V E V+QCLHC+DS+SG   PRP GE +HG   GEVL FD+ H+G S PL    +   +G  YLLV++DD+S +
Sbjct:    1 MDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNF 78          
BLAST of mRNA_H-paniculata_contig37288.9826.1 vs. uniprot
Match: A0A225V520_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V520_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.490e-16
Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = 0
Query:    1 AGHRGVDATVNRLAAYCVWDGMEAKVAELVRQCLHCLDSRSGSRAPRPLGELLHGTEVGEVLRFDFPHLGASDPLKEHEVIREGCPYLLVLLDDVSGYV 99
            +GHRGV A++ RL++  VWD M   +A  V +CL+CL S  GS+  RP GE +  T+  E+L FDFP L  S           G  Y+LVL DD++G+V
Sbjct:   68 SGHRGVAASLKRLSSSFVWDTMSTDMAVFVARCLNCL-STQGSKVRRPFGETVRATKPNELLHFDFPSLPTSTL---------GTSYVLVLKDDMTGFV 156          
BLAST of mRNA_H-paniculata_contig37288.9826.1 vs. uniprot
Match: A0A6G0QJK5_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0QJK5_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 5.920e-14
Identity = 40/99 (40.40%), Postives = 53/99 (53.54%), Query Frame = 0
Query:    1 AGHRGVDATVNRLAAYCVWDGMEAKVAELVRQCLHCLDSRSGSRAPRPLGELLHGTEVGEVLRFDFPHLGASDPLKEHEVIREGCPYLLVLLDDVSGYV 99
            +GHRG  AT   LA    W  M   V+  V  CLHC+ + +G R PRP GE L  T+  E+L FD+  +  S+          G  Y+LVL D++SGYV
Sbjct:  422 SGHRGARATTQALAMVFFWTTMSTDVSVFVSSCLHCM-ATAGGRIPRPFGETLRATKPNEILHFDYLTMVESE---------SGLKYVLVLKDNISGYV 510          
BLAST of mRNA_H-paniculata_contig37288.9826.1 vs. uniprot
Match: A0A6A3GU43_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GU43_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.740e-13
Identity = 40/98 (40.82%), Postives = 52/98 (53.06%), Query Frame = 0
Query:    2 GHRGVDATVNRLAAYCVWDGMEAKVAELVRQCLHCLDSRSGSRAPRPLGELLHGTEVGEVLRFDFPHLGASDPLKEHEVIREGCPYLLVLLDDVSGYV 99
            GHRG  AT   LA    W  M   V+  V  CLHC+ + +G R PRP GE L  T+  E+L FD+  +  S+          G  Y+LVL D++SGYV
Sbjct:  123 GHRGARATTQALAMVFFWTTMSTDVSVFVSGCLHCMTT-AGGRIPRPFGETLRATKPNEILHFDYLTMVESE---------SGLKYVLVLKDNMSGYV 210          
BLAST of mRNA_H-paniculata_contig37288.9826.1 vs. uniprot
Match: A0A6A4EGQ2_9STRA (Integrase_H2C2 domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4EGQ2_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.980e-13
Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = 0
Query:    1 AGHRGVDATVNRLAAYCVWDGMEAKVAELVRQCLHCLDSRSGSRAPRPLGELLHGTEVGEVLRFDFPHLGASDPLKEHEVIREGCPYLLVLLDDVSGYV 99
            +GH G  AT   LA    W  M   V+  V  CLHC+ + +G R PRP GE L  T+  E+L FD+  +  S+          G  Y+LVL D++SGYV
Sbjct:  135 SGHHGARATTQALAKVFFWMTMSTDVSAFVSGCLHCM-ATAGGRIPRPFGETLRATKPNEILHFDYLTMVESE---------SGLKYVLVLKDNMSGYV 223          
BLAST of mRNA_H-paniculata_contig37288.9826.1 vs. uniprot
Match: A0A6A3GX76_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GX76_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.350e-13
Identity = 39/99 (39.39%), Postives = 53/99 (53.54%), Query Frame = 0
Query:    1 AGHRGVDATVNRLAAYCVWDGMEAKVAELVRQCLHCLDSRSGSRAPRPLGELLHGTEVGEVLRFDFPHLGASDPLKEHEVIREGCPYLLVLLDDVSGYV 99
            +GHRG  AT   LA    W  M   V+  V  CLHC+ + +G R P+P GE L  T+  E+L FD+  +  S+          G  Y+LVL D++SGYV
Sbjct:  245 SGHRGARATTQALAVVFFWTTMSTDVSVFVSGCLHCM-ATAGGRIPQPFGETLRATKPNEILHFDYLTMVESE---------SGLKYVLVLKDNMSGYV 333          
BLAST of mRNA_H-paniculata_contig37288.9826.1 vs. uniprot
Match: A0A6A3GSN5_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GSN5_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.130e-11
Identity = 38/99 (38.38%), Postives = 50/99 (50.51%), Query Frame = 0
Query:    1 AGHRGVDATVNRLAAYCVWDGMEAKVAELVRQCLHCLDSRSGSRAPRPLGELLHGTEVGEVLRFDFPHLGASDPLKEHEVIREGCPYLLVLLDDVSGYV 99
            AGHRG   T   L     W  +   VA  V +C+HC+ + +G + PRPLGE L  T+  E L FDF  +              G  Y+LVL D++SGYV
Sbjct:  248 AGHRGAKTTAKALEDLFSWRSLRKDVAVFVSECMHCMATATG-KIPRPLGETLRATKPNEQLHFDFLSMAEG---------AGGLKYVLVLKDNMSGYV 336          
BLAST of mRNA_H-paniculata_contig37288.9826.1 vs. uniprot
Match: A0A0G4IIR3_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IIR3_PLABS)

HSP 1 Score: 69.3 bits (168), Expect = 1.150e-11
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 0
Query:   19 WDGMEAKVAELVRQCLHCLDSRSGSRAPRPLGELLHGTEVGEVLRFDFPHLGASDPLK--EHEVIREGCPYLLVLLDDVSGYV 99
            W G+E  V ++  QCLHC+ +R G RAPRPLG+ +HG E  +VL  D+ ++   +P++  +H+       Y+L+L DD SG V
Sbjct:    6 WTGVEENVQQMCDQCLHCITTRGGERAPRPLGQAVHGHERFQVLHMDYMYV---EPVRGADHDY-----KYILLLKDDFSGLV 80          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37288.9826.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JCX8_9PHAE8.820e-2752.53Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7F6_9PHAE9.240e-2752.53Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVS6_9PHAE5.070e-1750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A225V520_9STRA2.490e-1643.43Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G0QJK5_9STRA5.920e-1440.40Reverse transcriptase domain-containing protein n=... [more]
A0A6A3GU43_9STRA2.740e-1340.82Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A4EGQ2_9STRA3.980e-1339.39Integrase_H2C2 domain-containing protein n=3 Tax=P... [more]
A0A6A3GX76_9STRA5.350e-1339.39Uncharacterized protein (Fragment) n=2 Tax=Phytoph... [more]
A0A6A3GSN5_9STRA1.130e-1138.38Integrase catalytic domain-containing protein n=2 ... [more]
A0A0G4IIR3_PLABS1.150e-1140.96Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.340.70coord: 1..40
e-value: 1.6E-7
score: 33.4
IPR041588Integrase zinc-binding domainPFAMPF17921Integrase_H2C2coord: 1..39
e-value: 1.7E-9
score: 37.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37288contigH-paniculata_contig37288:1852..2148 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37288.9826.1mRNA_H-paniculata_contig37288.9826.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig37288 1852..2148 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig37288.9826.1 ID=prot_H-paniculata_contig37288.9826.1|Name=mRNA_H-paniculata_contig37288.9826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
AGHRGVDATVNRLAAYCVWDGMEAKVAELVRQCLHCLDSRSGSRAPRPLG
ELLHGTEVGEVLRFDFPHLGASDPLKEHEVIREGCPYLLVLLDDVSGYV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041588Integrase_H2C2