prot_H-paniculata_contig37207.9812.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig37207.9812.1
Unique Nameprot_H-paniculata_contig37207.9812.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length532
Homology
BLAST of mRNA_H-paniculata_contig37207.9812.1 vs. uniprot
Match: A0A8F0F7F5_9PHAE (DNA-directed RNA polymerase n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7F5_9PHAE)

HSP 1 Score: 895 bits (2313), Expect = 1.310e-314
Identity = 453/532 (85.15%), Postives = 492/532 (92.48%), Query Frame = 0
Query:    1 MVNKSTIFFNSVINKKELKKIIEWAFKTHGPRKAAYLVDQLKEIGFDYATKSGISISIEDLKVPPAKKNLMDQANRDIFLTDAAIKNGEITEVEKFQKTIFIWNSTSEYLKDELIEFLKKNDPLNSLYIMAFSGARGNISQVRQLVGMRGLMSGPSGQIIEKAIGANFREGLSVTDYIVSSYGARKGLVDTAIKTADSGYLTRRLVEVVQSIIVSELDCKTERGIILEVKSFNKSEMLSLLQEKAIGRLLAFPIFPCGNNTPIANKDEQITSSLIEKVINLKVNKIMIRSPLTCECRRLVCQHCYGLNLASDNLVDLGETVGLIAAQSIGEPGTQLTMRTFHTGGIFTSEVKRQSRSGQLGYTYFSPEMKTIPFRTKYGQDALLVREASFISIINAAKENNTVPISPQTVILVNNNTWVQPNDILFDSIPGVKEKKVVLKEVKYIFARESGKILLEEKNSPQKIINENFRNRVKKNYIFWVLSGQVFSTPFQIDLKARKFTKIYKHQSIAESKITTPIGGFVYFCREKLMSE 532
            M  KSTIFFNSVINKKELKKIIEWAFKTHG RKAAYLVDQLKEIGFDYATKSGISISIEDLKVPPAK  LM +AN+DIFLTDAA+KNGEITEVEKFQKTI+IWNSTSEYLK+ELIEFLKK+DPLNSLYIMAFSGARGNISQVRQLVGMRGLMSGPSGQIIEKAIGANFREGLSVTDYIVSSYGARKGLVDTAIKTADSGYLTRRLVEV QSII+SELDC+TERGI+LEVK+ +  E+L  L+EKAIGRLLAFPIF    N P+A K+EQITSSL+EK+I LK++KI++RSPLTCECRR VCQHCYGLNL+SDNLVDLGETVGLIAAQSIGEPGTQLTMRTFHTGGIFTSEVKRQ++SGQLGY +F PEMKT+PFRTKYGQDALLV+EASFI IINAA E   V ISPQT+IL  NNTWVQPNDILFDS+PG+KE+KV +KEVK IFARE GKI+LEE NSPQKIINENFR R KKNY+FWVLSGQVFSTPFQIDLK R FTK+YK+QS+AESKI TP+GGFVYFC +KLMSE
Sbjct:    1 MGKKSTIFFNSVINKKELKKIIEWAFKTHGQRKAAYLVDQLKEIGFDYATKSGISISIEDLKVPPAKSILMKEANQDIFLTDAAVKNGEITEVEKFQKTIYIWNSTSEYLKEELIEFLKKSDPLNSLYIMAFSGARGNISQVRQLVGMRGLMSGPSGQIIEKAIGANFREGLSVTDYIVSSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIISELDCRTERGILLEVKTSDNIEVLLSLKEKAIGRLLAFPIFAPSINIPLATKNEQITSSLVEKLIKLKLDKIIVRSPLTCECRRSVCQHCYGLNLSSDNLVDLGETVGLIAAQSIGEPGTQLTMRTFHTGGIFTSEVKRQTKSGQLGYIHFLPEMKTVPFRTKYGQDALLVQEASFIYIINAANEITKVSISPQTLILTKNNTWVQPNDILFDSVPGLKEEKVGIKEVKSIFAREPGKIILEENNSPQKIINENFRRRGKKNYVFWVLSGQVFSTPFQIDLKVRNFTKVYKYQSVAESKIITPVGGFVYFCTDKLMSE 532          
BLAST of mRNA_H-paniculata_contig37207.9812.1 vs. uniprot
Match: A0A8F0FAT1_9PHAE (DNA-directed RNA polymerase n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAT1_9PHAE)

HSP 1 Score: 701 bits (1809), Expect = 1.140e-238
Identity = 353/532 (66.35%), Postives = 428/532 (80.45%), Query Frame = 0
Query:    1 MVNKSTIFFNSVINKKELKKIIEWAFKTHGPRKAAYLVDQLKEIGFDYATKSGISISIEDLKVPPAKKNLMDQANRDIFLTDAAIKNGEITEVEKFQKTIFIWNSTSEYLKDELIEFLKKNDPLNSLYIMAFSGARGNISQVRQLVGMRGLMSGPSGQIIEKAIGANFREGLSVTDYIVSSYGARKGLVDTAIKTADSGYLTRRLVEVVQSIIVSELDCKTERGIILEVKSFNKSEMLSLLQEKAIGRLLAFPIFPCGNNTPIANKDEQITSSLIEKVINLKVNKIMIRSPLTCECRRLVCQHCYGLNLASDNLVDLGETVGLIAAQSIGEPGTQLTMRTFHTGGIFTSEVKRQSRSGQLGYTYFSPEMKTIPFRTKYGQDALLVREASFISIINAAKENNTVPISPQTVILVNNNTWVQPNDILFDSIPGVKEKKVVLKEVKYIFARESGKILLEEKNSPQKIINENFRNRVKKNYIFWVLSGQVFSTPFQIDLKARKFTKIYKHQSIAESKITTPIGGFVYFCREKLMSE 532
            M+ +S IF N+VINKKELKKIIEWAF  +G RKAA+ VD+LKEIGF+YATKSGISISIEDL++PPAK  LM  A  D+F T++   NGEITEVE+FQK I+IWN+TSE LK+ LI+FLKK DPLNS+YIMAFSGARGNISQVRQL+GMRGLMS P+GQII++AIGANFREGLS+TDYI+SSYGARKG+VDTAIKTADSGYLTRRLVEV QSII+SELDCKTERGI L+      ++    L++   GR+LA  IF  G N  IA+++EQIT+ L+EK+I+LK+ K++IRSPLTC+CRR VCQHCYG NLAS NLVDLGETVGLIAAQSIGEPGTQLTMRTFHTGGIFTSE+ RQSRS   GY  F P +K  P+RT YGQDAL+    S++ I+N A E   V +  QT+ILV NN +++ N++LF++ P +KE K+  KE+KYI+A+ESGKI+LE    PQ+I+N++F  R KKNYIFWVLSGQV S  F   L+ RK  K+YK QSIA+SK+ T IGGF +FCR +L  E
Sbjct:    1 MLKQSKIFSNNVINKKELKKIIEWAFNNYGQRKAAFFVDRLKEIGFEYATKSGISISIEDLRIPPAKTVLMQNATEDVFTTESRANNGEITEVERFQKLIYIWNTTSEELKERLIDFLKKTDPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDPNGQIIDRAIGANFREGLSITDYIISSYGARKGIVDTAIKTADSGYLTRRLVEVAQSIIISELDCKTERGIFLQESLEIDNKRFLSLKQLVNGRVLASSIFKPGTNEIIASRNEQITNELVEKLISLKITKVLIRSPLTCQCRRSVCQHCYGWNLASGNLVDLGETVGLIAAQSIGEPGTQLTMRTFHTGGIFTSELIRQSRSECSGYISFLPTLKIRPYRTDYGQDALISENRSWLRIVNYANEVLNVRVEDQTLILVKNNQYIKNNEVLFEAAPKLKEIKLAQKEIKYIYAKESGKIILENNGFPQEIVNDDFDRRSKKNYIFWVLSGQVLSIAFSAKLRVRKLKKVYKDQSIAQSKMVTTIGGFAHFCRNELTQE 532          
BLAST of mRNA_H-paniculata_contig37207.9812.1 vs. uniprot
Match: A0A0R6M448_UNDPI (DNA-directed RNA polymerase n=32 Tax=Laminariales TaxID=2886 RepID=A0A0R6M448_UNDPI)

HSP 1 Score: 682 bits (1760), Expect = 2.590e-231
Identity = 346/532 (65.04%), Postives = 420/532 (78.95%), Query Frame = 0
Query:    1 MVNKSTIFFNSVINKKELKKIIEWAFKTHGPRKAAYLVDQLKEIGFDYATKSGISISIEDLKVPPAKKNLMDQANRDIFLTDAAIKNGEITEVEKFQKTIFIWNSTSEYLKDELIEFLKKNDPLNSLYIMAFSGARGNISQVRQLVGMRGLMSGPSGQIIEKAIGANFREGLSVTDYIVSSYGARKGLVDTAIKTADSGYLTRRLVEVVQSIIVSELDCKTERGIILEVKSFNKSEMLSLLQEKAIGRLLAFPIFPCGNNTPIANKDEQITSSLIEKVINLKVNKIMIRSPLTCECRRLVCQHCYGLNLASDNLVDLGETVGLIAAQSIGEPGTQLTMRTFHTGGIFTSEVKRQSRSGQLGYTYFSPEMKTIPFRTKYGQDALLVREASFISIINAAKENNTVPISPQTVILVNNNTWVQPNDILFDSIPGVKEKKVVLKEVKYIFARESGKILLEEKNSPQKIINENFRNRVKKNYIFWVLSGQVFSTPFQIDLKARKFTKIYKHQSIAESKITTPIGGFVYFCREKLMSE 532
            M+ +S IF N++INKKELKKIIEWAFK +G RKA Y VDQLKEIGF+YATKSGISISIEDLK+ PAK  LM+ A+ D+FL ++   NGEITEVE+FQ+ I+IWNSTSE LKD LIEF KKNDPLNS+YIMAFSGARGNI+QVRQLVGMRGLMS P+G+II++AIGANFREGLS+TDYI+SSYGARKGLVDTAIKTADSGYLTRRLVEV QSII+SELDCKTERGI LE       +    L+E   GR+LA  IF  G+   +A ++++IT S+IE+++  K+NK++IRSPLTCECRR VCQ CYG NLA   LV+LGETVGLIAAQSIGEPGTQLTMRTFHTGGIFTSE+ RQ R+   GY  F PE+K  P+RT YGQDA++    S+++IIN A E   V +  +T+ILVNNN +++ N +LF++ P +KE  +  KE+KYI A+E G+I LE    PQ +IN+NF  R KKNYIFWVLSGQVFS  F  +L+ RK  KIYK+Q+IA+SK+ T IGGF +  R +L  E
Sbjct:    1 MLKQSKIFSNNIINKKELKKIIEWAFKNYGQRKAVYFVDQLKEIGFEYATKSGISISIEDLKISPAKSALMEIASNDVFLAESQANNGEITEVERFQRIIYIWNSTSEELKDRLIEFFKKNDPLNSVYIMAFSGARGNIAQVRQLVGMRGLMSDPNGKIIDRAIGANFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIISELDCKTERGIFLEEDVEKDEKGFLSLKELLNGRILALTIFKPGSKEILALRNQEITPSVIEELVKFKINKVLIRSPLTCECRRAVCQQCYGWNLALGTLVELGETVGLIAAQSIGEPGTQLTMRTFHTGGIFTSELIRQGRAQCSGYINFLPELKISPYRTNYGQDAVVSENQSWLAIINYANEIVKVRVEARTIILVNNNNYIKRNQVLFEAAPKIKEINLAEKEIKYICAKEPGEIFLENDGFPQTLINDNFSKRSKKNYIFWVLSGQVFSIAFNTNLRVRKSEKIYKNQAIAQSKMVTTIGGFTHLSRNRLTQE 532          
BLAST of mRNA_H-paniculata_contig37207.9812.1 vs. uniprot
Match: A0A8F0F804_9PHAE (DNA-directed RNA polymerase n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F804_9PHAE)

HSP 1 Score: 680 bits (1755), Expect = 1.370e-230
Identity = 348/532 (65.41%), Postives = 420/532 (78.95%), Query Frame = 0
Query:    1 MVNKSTIFFNSVINKKELKKIIEWAFKTHGPRKAAYLVDQLKEIGFDYATKSGISISIEDLKVPPAKKNLMDQANRDIFLTDAAIKNGEITEVEKFQKTIFIWNSTSEYLKDELIEFLKKNDPLNSLYIMAFSGARGNISQVRQLVGMRGLMSGPSGQIIEKAIGANFREGLSVTDYIVSSYGARKGLVDTAIKTADSGYLTRRLVEVVQSIIVSELDCKTERGIILEVKSFNKSEMLSLLQEKAIGRLLAFPIFPCGNNTPIANKDEQITSSLIEKVINLKVNKIMIRSPLTCECRRLVCQHCYGLNLASDNLVDLGETVGLIAAQSIGEPGTQLTMRTFHTGGIFTSEVKRQSRSGQLGYTYFSPEMKTIPFRTKYGQDALLVREASFISIINAAKENNTVPISPQTVILVNNNTWVQPNDILFDSIPGVKEKKVVLKEVKYIFARESGKILLEEKNSPQKIINENFRNRVKKNYIFWVLSGQVFSTPFQIDLKARKFTKIYKHQSIAESKITTPIGGFVYFCREKLMSE 532
            M+N+S IF N+ INKKELKKIIEWAFK +G RKAAY VDQLKEIGF+YATKSGISISIEDL++PPAK  LM  A++D+FL ++   NGEITEVE+FQ+ I+IWNSTSE LK+ LI+F KKNDPLNS+YIMAFSGARGNI+QVRQLVGMRGLMS P+G+II++AIGANFREGLS+TDYI+SSYGARKGLVDTAIKTADSGYLTRRLVEV QSII+SELDCKTERGI +E       +    L E   GR+LA  IF  G    IA +++QIT SL+EK++  K+NK++IRSPLTCECRR VCQHCYG NLA   LV+LGETVGLIAAQSIGEPGTQLTMRTFHTGGIFTSE+ RQ R+   GY  F PE+K  P+RT YGQDA++    S+++IIN A E   V +  +T+ILV N+ +++ N +LF++ P +KE  +  KE+KYI A+E G+I+LE+   P+   NE F  R KKNYIFWVLSGQVFS  F   LK RK  KIY++Q+IA+SK+ T IGGFV+F R KL  E
Sbjct:    1 MLNRSKIFSNNTINKKELKKIIEWAFKNYGQRKAAYFVDQLKEIGFEYATKSGISISIEDLRIPPAKIPLMKIASQDVFLAESQANNGEITEVERFQRIIYIWNSTSEELKERLIDFFKKNDPLNSVYIMAFSGARGNIAQVRQLVGMRGLMSDPNGKIIDRAIGANFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIISELDCKTERGIFIEEDLEKDEKGFLSLNELLNGRVLASSIFKPGTKDSIALRNQQITPSLLEKLLKFKINKVLIRSPLTCECRRAVCQHCYGWNLALGTLVELGETVGLIAAQSIGEPGTQLTMRTFHTGGIFTSELIRQGRAHCSGYLNFLPELKVSPYRTNYGQDAVVSENQSWLAIINYANEIVKVRVEARTIILVANHNYIKRNQVLFEAAPKIKEINLAEKEIKYICAKEPGEIVLEKNGFPEDSSNEIFTQRSKKNYIFWVLSGQVFSIGFNTALKIRKLEKIYRNQAIAQSKMVTTIGGFVHFSRNKLTQE 532          
BLAST of mRNA_H-paniculata_contig37207.9812.1 vs. uniprot
Match: D1GJH4_FUCVE (DNA-directed RNA polymerase subunit beta'' n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJH4_FUCVE)

HSP 1 Score: 675 bits (1741), Expect = 1.970e-228
Identity = 335/532 (62.97%), Postives = 419/532 (78.76%), Query Frame = 0
Query:    1 MVNKSTIFFNSVINKKELKKIIEWAFKTHGPRKAAYLVDQLKEIGFDYATKSGISISIEDLKVPPAKKNLMDQANRDIFLTDAAIKNGEITEVEKFQKTIFIWNSTSEYLKDELIEFLKKNDPLNSLYIMAFSGARGNISQVRQLVGMRGLMSGPSGQIIEKAIGANFREGLSVTDYIVSSYGARKGLVDTAIKTADSGYLTRRLVEVVQSIIVSELDCKTERGIILEVKSFNKSEMLSLLQEKAIGRLLAFPIFPCGNNTPIANKDEQITSSLIEKVINLKVNKIMIRSPLTCECRRLVCQHCYGLNLASDNLVDLGETVGLIAAQSIGEPGTQLTMRTFHTGGIFTSEVKRQSRSGQLGYTYFSPEMKTIPFRTKYGQDALLVREASFISIINAAKENNTVPISPQTVILVNNNTWVQPNDILFDSIPGVKEKKVVLKEVKYIFARESGKILLEEKNSPQKIINENFRNRVKKNYIFWVLSGQVFSTPFQIDLKARKFTKIYKHQSIAESKITTPIGGFVYFCREKLMSE 532
            M + S IF N++INKKELKKIIEWAF  +G RKAAY VDQLK +GF+YATKSGISISIEDL++PP K  LM  A RD+F+T++   NGEITEVE+FQK I+IWN+TSE LK+ LI+F KK DPLNS+YIMAFSGARGNISQVRQLVGMRGLMS P+GQII++AI ANFREGLS+TDYI+SSYGARKGLVDTAIKTADSGYLTRRLVEV QSII+SELDCKT+RGI+L+    +  +    ++E   GR+LA  I   G    +A +++Q+TSSL +++INLK+ KI+IRSPLTCECRR VCQHCYG NLAS NLV+LGETVGLIAAQSIGEPGTQLTMRTFHTGG+FT E+ RQ R+   GY  F P +K IP+RT YGQD ++    S+++IIN A +   + +  +T+ILVNN+ +++ N +LF++ P +K+  +  KE+KY+ A+ SG+I+LE+   P    NE+F  R KKNYIFWVLSG+VFS PF   +K RK  KIYK+Q++A+SKI T +GGF++FCR  L  E
Sbjct:    6 MSSNSKIFSNNIINKKELKKIIEWAFNNYGQRKAAYFVDQLKGLGFEYATKSGISISIEDLRIPPVKTTLMKNATRDVFITESKANNGEITEVERFQKIIYIWNNTSEELKERLIDFFKKTDPLNSVYIMAFSGARGNISQVRQLVGMRGLMSDPNGQIIDRAITANFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIISELDCKTKRGILLQEDIESDKKKFLSVKELINGRVLATSICKPGTKELVAFRNQQVTSSLTKQIINLKIAKILIRSPLTCECRRAVCQHCYGWNLASGNLVELGETVGLIAAQSIGEPGTQLTMRTFHTGGVFTGELTRQGRAECSGYIQFLPTLKVIPYRTNYGQDVVMSENQSWLTIINYANKIINIKVESRTLILVNNHNYIKQNQVLFEAAPKIKDINLSQKEIKYVCAKRSGEIILEKNGFPGAFSNEDFTRRSKKNYIFWVLSGKVFSIPFNTSIKIRKLEKIYKNQALAQSKIVTTMGGFIHFCRNTLTQE 537          
BLAST of mRNA_H-paniculata_contig37207.9812.1 vs. uniprot
Match: A0A2I4Q2M6_9PHAE (DNA-directed RNA polymerase n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2M6_9PHAE)

HSP 1 Score: 661 bits (1705), Expect = 3.390e-223
Identity = 334/528 (63.26%), Postives = 407/528 (77.08%), Query Frame = 0
Query:    1 MVNKSTIFFNSVINKKELKKIIEWAFKTHGPRKAAYLVDQLKEIGFDYATKSGISISIEDLKVPPAKKNLMDQANRDIFLTDAAIKNGEITEVEKFQKTIFIWNSTSEYLKDELIEFLKKNDPLNSLYIMAFSGARGNISQVRQLVGMRGLMSGPSGQIIEKAIGANFREGLSVTDYIVSSYGARKGLVDTAIKTADSGYLTRRLVEVVQSIIVSELDCKTERGIILEVKSFNKSEMLSLLQEKAIGRLLAFPIFPCGNNTPIANKDEQITSSLIEKVINLKVNKIMIRSPLTCECRRLVCQHCYGLNLASDNLVDLGETVGLIAAQSIGEPGTQLTMRTFHTGGIFTSEVKRQSRSGQLGYTYFSPEMKTIPFRTKYGQDALLVREASFISIINAAKENNTVPISPQTVILVNNNTWVQPNDILFDSIPGVKEKKVVLKEVKYIFARESGKILLEEKNSPQKIINENFRNRVKKNYIFWVLSGQVFSTPFQIDLKARKFTKIYKHQSIAESKITTPIGGFVYFCREK 528
            MV +S IFFN  INKKELK+I+ WAF++ G RKAAY +DQLK +GF+YAT SGISIS+EDL+VPP KK LM  A++ I LT A  KNGEITEVE+FQK I+IWN TSE LK+ LIEF KK DPLNS+YIMAFSGARGNI QVRQLVGMRGLMS P+GQII+ AI ANFREGLS+TDYI+SSYGARKG+VDTAIKTADSGYLTRRLVE+ Q IIVSELDCKT RG++LE K   KS  L  + EKAIGR+L+  +        IA  +++IT  LI+  ++LK+ +I++RSPLTCECRR VCQ CYGLN+AS  LV+LGET+GLIAAQSIGEPGTQLTMRTFHTGG+FTSE+ RQ+R+   GY  F P     PFRT YGQDA L    S++ I+N +     V I  +T+IL  N++ ++ +D+LF++ P + +KK+  KE+KYI A+ESG+I+LE K  PQ +I ENFR R K NYIFWVLSGQVFS PF   +KARKF ++ K QSIA+SK+ T I GFV+F   K
Sbjct:    1 MVQESKIFFNKTINKKELKRILSWAFESFGQRKAAYFIDQLKGLGFEYATNSGISISLEDLRVPPIKKALMQTASQSISLTQAQAKNGEITEVERFQKIIYIWNLTSETLKERLIEFFKKKDPLNSVYIMAFSGARGNIGQVRQLVGMRGLMSDPNGQIIDNAISANFREGLSITDYIISSYGARKGIVDTAIKTADSGYLTRRLVEITQGIIVSELDCKTLRGVVLETKKIIKSNNLLSINEKAIGRILSHQVIKPKTKELIAGINQEITLDLIKIFLDLKIEEIIVRSPLTCECRRAVCQKCYGLNMASGELVELGETIGLIAAQSIGEPGTQLTMRTFHTGGVFTSELARQARANCTGYVRFVPTSSLKPFRTSYGQDAFLSERESYLRILNYSNRIIEVKIDARTIILAKNHSCIKVDDVLFEASPNLNDKKLAQKEIKYISAQESGEIILENKGFPQMLITENFRKRSKNNYIFWVLSGQVFSIPFGSKIKARKFERVIKGQSIAQSKVLTTISGFVHFSLNK 528          
BLAST of mRNA_H-paniculata_contig37207.9812.1 vs. uniprot
Match: A0A8F0F9S6_9PHAE (DNA-directed RNA polymerase n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9S6_9PHAE)

HSP 1 Score: 657 bits (1696), Expect = 1.010e-221
Identity = 335/532 (62.97%), Postives = 412/532 (77.44%), Query Frame = 0
Query:    1 MVNKSTIFFNSVINKKELKKIIEWAFKTHGPRKAAYLVDQLKEIGFDYATKSGISISIEDLKVPPAKKNLMDQANRDIFLTDAAIKNGEITEVEKFQKTIFIWNSTSEYLKDELIEFLKKNDPLNSLYIMAFSGARGNISQVRQLVGMRGLMSGPSGQIIEKAIGANFREGLSVTDYIVSSYGARKGLVDTAIKTADSGYLTRRLVEVVQSIIVSELDCKTERGIILEVKSFNKSEMLSLLQEKAIGRLLAFPIFPCGNNTPIANKDEQITSSLIEKVINLKVNKIMIRSPLTCECRRLVCQHCYGLNLASDNLVDLGETVGLIAAQSIGEPGTQLTMRTFHTGGIFTSEVKRQSRSGQLGYTYFSPEMKTIPFRTKYGQDALLVREASFISIINAAKENNTVPISPQTVILVNNNTWVQPNDILFDSIPGVKEKKVVLKEVKYIFARESGKILLEEKNSPQKIINENFRNRVKKNYIFWVLSGQVFSTPFQIDLKARKFTKIYKHQSIAESKITTPIGGFVYFCREKLMSE 532
            M+ +S IF N++INKKELKKIIEWAF+ +G RKAAY VDQLKEIGF+YATKSGISISIEDLK+PPAK +LM+ A+  I L ++   NGEITEVE+FQ+ I IW++TSE LK+ L++F KK DPLNS+YIMAFSGARGNI QVRQLVGMRGLM+ P+G+II+KAIGANFREGLS+TDYI+SSYGARKGLVDTAIKTADSGYLTRRLVEV QSII++ELDCKT RGI LE +       +  ++E   GR+LA  I     N  I  ++EQ+TS+LI+++I  K+ KI+IRSPLTC+CRR VCQHCYG NLA   LVDLGETVGLIAAQSIGEPGTQLTMRTFHTGG+FT ++ RQ R+   GY  F PE+K  P+RT YGQDA++    S++ I+N +     V +  +T+ILV N   ++ N +LF++ P + E  +  KE+KYI A+ESG+I+LE+ + P    NENF  R KKNY FWVLSGQVFS  F   LKARK  KIYK+Q+IA+SKI T IGGFV+F R KL +E
Sbjct:    1 MLKRSKIFSNNIINKKELKKIIEWAFRNYGQRKAAYFVDQLKEIGFEYATKSGISISIEDLKIPPAKISLMESASHAISLAESQASNGEITEVERFQRIIHIWSTTSEELKERLVDFFKKRDPLNSVYIMAFSGARGNIEQVRQLVGMRGLMADPNGKIIDKAIGANFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIINELDCKTRRGIFLEDEEKTDENDVLPMRELLNGRVLASSICKPDTNEVIGVRNEQLTSTLIDELIKFKIPKILIRSPLTCQCRRAVCQHCYGWNLALGTLVDLGETVGLIAAQSIGEPGTQLTMRTFHTGGVFTGQLIRQGRATSSGYINFLPELKLSPYRTDYGQDAVVSENQSWLGILNYSNRMVKVRVEARTIILVANKKHIRRNQVLFEAAPKINEMNLAEKEIKYICAKESGEIVLEKNSFPYDSSNENFTKRTKKNYSFWVLSGQVFSIAFNTKLKARKLEKIYKNQAIAQSKIVTTIGGFVHFSRNKLTNE 532          
BLAST of mRNA_H-paniculata_contig37207.9812.1 vs. uniprot
Match: A0A344PFA2_9PHAE (DNA-directed RNA polymerase n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PFA2_9PHAE)

HSP 1 Score: 653 bits (1685), Expect = 4.120e-220
Identity = 343/537 (63.87%), Postives = 411/537 (76.54%), Query Frame = 0
Query:    1 MVNKSTIFFNSVINKKELKKIIEWAFKTHGPRKAAYLVDQLKEIGFDYATKSGISISIEDLKVPPAKKNLMDQANRDIFLTDAAIKNGEITEVEKFQKTIFIWNSTSEYLKDELIEFLKKNDPLNSLYIMAFSGARGNISQVRQLVGMRGLMSGPSGQIIEKAIGANFREGLSVTDYIVSSYGARKGLVDTAIKTADSGYLTRRLVEVVQSIIVSELDCKTERGIILE--VKSFNKSEMLSLLQEKAIGRLLAFPIFPCGNNTPIANKDEQITSSLIEKVINLKVNKIMIRSPLTCECRRLVCQHCYGLNLASDNLVDLGETVGLIAAQSIGEPGTQLTMRTFHTGGIFTSEVKRQSRSGQLGYTYFSPEMKTIPFRTKYGQDALLVREASFISIINAAKENNTVPISPQTVILVNNNTWVQPNDILFDSIPGVKEKKVVLKEVKYIFARESGKILLEEKNSPQKIINEN---FRNRVKKNYIFWVLSGQVFSTPFQIDLKARKFTKIYKHQSIAESKITTPIGGFVYFCREKLMSE 532
            M  +S IF N+ INKKELKKII WAFK +G RKAA+ VDQLKEIGF+YATKSGISI IEDL++PP K +LM +A+ D FLT+A  KNGEITEVE+FQ+ I+IWN+TSE LK+ LIEF KK DPLNS+YIMAFSGARGNISQVRQLVGMRGLMS PSG+II++AIG+NFREGLS+TDYI+SSYGARKGLVDTA+KTADSGYLTRRLVEV QSII+SELDCKT+RG+ L+  VK  N+   LSL  E   GR+LA  I        IA +++QITSSLIE +I  K+NK+++RSPLTCECRR VCQHCYG NLA  NLV+LGETVGLIAAQSIGEPGTQLTMRTFHTGG+FTSE+ RQ R    GY  F  E+K  P+RTKYGQ+ALL    S++ +I    +   +PI   T+I   N+T++  N +L ++ P +KE  +  KE+KY+ AR  GKI+LE+  SPQ    +N   FR R KKNY FWVLSG+V ST F   ++ARK  KIYK QSIA+SKI T IGGF+ F R K   E
Sbjct:    1 MAKRSNIFSNNTINKKELKKIIGWAFKNYGQRKAAFFVDQLKEIGFEYATKSGISIGIEDLRIPPIKIDLMRKASLDAFLTEAQAKNGEITEVERFQRIIYIWNTTSEELKERLIEFFKKTDPLNSVYIMAFSGARGNISQVRQLVGMRGLMSDPSGRIIDRAIGSNFREGLSITDYIISSYGARKGLVDTAVKTADSGYLTRRLVEVAQSIIISELDCKTKRGVFLQEGVKDENEKGFLSLT-ELLNGRVLASSIVEPETKKIIALRNQQITSSLIENLIKFKINKVLVRSPLTCECRRAVCQHCYGWNLALGNLVELGETVGLIAAQSIGEPGTQLTMRTFHTGGVFTSELIRQGRVNYSGYLDFMSELKLRPYRTKYGQNALLSENDSWLGVITYDNKIIRLPIPENTIIFSENHTYITDNQVLLEAAPKMKEITLGEKEIKYVNARHPGKIILEKNGSPQDYQKQNISDFRKRGKKNYSFWVLSGEVLSTAFDTVIRARKLEKIYKDQSIAQSKIVTTIGGFIRFSRNKSTQE 536          
BLAST of mRNA_H-paniculata_contig37207.9812.1 vs. uniprot
Match: A0A110AQ85_9PHAE (DNA-directed RNA polymerase n=15 Tax=Sargassaceae TaxID=3014 RepID=A0A110AQ85_9PHAE)

HSP 1 Score: 650 bits (1678), Expect = 4.120e-219
Identity = 329/529 (62.19%), Postives = 412/529 (77.88%), Query Frame = 0
Query:    1 MVNKSTIFFNSVINKKELKKIIEWAFKTHGPRKAAYLVDQLKEIGFDYATKSGISISIEDLKVPPAKKNLMDQANRDIFLTDAAIKNGEITEVEKFQKTIFIWNSTSEYLKDELIEFLKKNDPLNSLYIMAFSGARGNISQVRQLVGMRGLMSGPSGQIIEKAIGANFREGLSVTDYIVSSYGARKGLVDTAIKTADSGYLTRRLVEVVQSIIVSELDCKTERGIILEVKSFNKSEMLSLLQEKAIGRLLAFPIFPCGNNTPIANKDEQITSSLIEKVINLKVNKIMIRSPLTCECRRLVCQHCYGLNLASDNLVDLGETVGLIAAQSIGEPGTQLTMRTFHTGGIFTSEVKRQSRSGQLGYTYFSPEMKTIPFRTKYGQDALLVREASFISIINAAKENNTVPISPQTVILVNNNTWVQPNDILFDSIPGVKEKKVVLKEVKYIFARESGKILLEEKNSPQKIINENFRNRVKKNYIFWVLSGQVFSTPFQIDLKARKFTKIYKHQSIAESKITTPIGGFVYFCREKL 529
            M+ KS IF N++INKKELKKIIEWAF  +G RKAAY VDQLKE+GF YATKSGISISIEDL++P +K  LM  A +++F T++   NG ITEVE+FQK I IWN TSE LK+ LI+FLK+NDPLNS+Y+MAFSGARGNISQVRQL+GMRGLMS P+GQII++AI ANFREGLS+TDYI+SSYGARKGLVDTAIKTADSGYLTRRLVEV QSII+S+LDC+T+RGI+L+  S    E LS  +E   GR+LA  I        I  +++ +TSSLIE++I   + KI+IRSPLTCECRR +CQHCYG NLAS NLV+LGETVGLIAAQSIGEPGTQLTMRTFHTGG+FT ++ RQ R+   GY  F P +K IP+RT YG+D ++    S + IIN A ++  V +  +T+ILVNN+ +++ N +LF++ P +K+  +  KE+KYI+ +E G+I+LE    PQ   +E+F  R +KNYIFWVLSG+VFS  F I+LKARK   IYK+Q++A+SKI T IGGF+Y  R KL
Sbjct:    1 MLRKSKIFSNNIINKKELKKIIEWAFNNYGQRKAAYFVDQLKEMGFKYATKSGISISIEDLRIPASKVTLMQAATKEVFFTESRANNGAITEVERFQKIISIWNRTSEELKESLIDFLKRNDPLNSVYVMAFSGARGNISQVRQLIGMRGLMSDPNGQIIDRAITANFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIISQLDCQTKRGIVLQQDS---KEFLST-KELLYGRILASSICKPKTKEIIGFRNQLVTSSLIEQIIKFNIPKILIRSPLTCECRRSICQHCYGENLASGNLVELGETVGLIAAQSIGEPGTQLTMRTFHTGGVFTGQLTRQGRAECSGYVIFLPTLKVIPYRTSYGEDVVMSENQSSLKIINYANKDIKVKVESRTLILVNNHNYIKRNQVLFEAAPKIKDINLAKKEIKYIYVKEGGEIILERNGFPQNCESEDFTKRSRKNYIFWVLSGRVFSLSFNINLKARKLENIYKNQALAQSKIITTIGGFIYIYRCKL 525          
BLAST of mRNA_H-paniculata_contig37207.9812.1 vs. uniprot
Match: D1J789_ECTSI (DNA-directed RNA polymerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J789_ECTSI)

HSP 1 Score: 649 bits (1675), Expect = 1.290e-218
Identity = 340/536 (63.43%), Postives = 408/536 (76.12%), Query Frame = 0
Query:    1 MVNKSTIFFNSVINKKELKKIIEWAFKTHGPRKAAYLVDQLKEIGFDYATKSGISISIEDLKVPPAKKNLMDQANRDIFLTDAAIKNGEITEVEKFQKTIFIWNSTSEYLKDELIEFLKKNDPLNSLYIMAFSGARGNISQVRQLVGMRGLMSGPSGQIIEKAIGANFREGLSVTDYIVSSYGARKGLVDTAIKTADSGYLTRRLVEVVQSIIVSELDCKTERGIILEVKSFNKSEMLSL-LQEKAIGRLLAFPIFPCGNNTPIANKDEQITSSLIEKVINLKVNKIMIRSPLTCECRRLVCQHCYGLNLASDNLVDLGETVGLIAAQSIGEPGTQLTMRTFHTGGIFTSEVKRQSRSGQLGYTYFSPEMKTIPFRTKYGQDALLVREASFISIINAAKENNTVPISPQTVILVNNNTWVQPNDILFDSIPGVKEKKVVLKEVKYIFARESGKILLEEKNSPQKIINEN---FRNRVKKNYIFWVLSGQVFSTPFQIDLKARKFTKIYKHQSIAESKITTPIGGFVYFCREKLMSE 532
            M+ +S IF N+ INKKELKKIIEWAFK +G RKAAY VDQLKE+GF+YATKSGISISIEDL++PP K +LM +A+ D FLT+A  KNGEITEVE+FQ+ I+IWN+TSE LK+ LIEF KK DPLNS+YIMAFSGARGNI+QVRQLVGMRGLMS PSG+II++AIGANFREGLS+TDYI+SSYGARKGLVDTAIKTADSGYLTRRLVEV QSII+SELDCKTERGI L+    +K E   L L E   GR+LA  IF  G    IA ++++ITSSL+E +I   + K+++RSPLTCECRR VCQHCYG NLA  NLV+LGETVGLIAAQSIGEPGTQLTMRTFHTGG+FTSE+ RQ R    GY  F  E+K  P+RT+YGQ ALL    S++ II    +   +PI   T+I   N+ ++  N +L ++ P +KE  +  KE+KY+ AR  G+I LEE + PQ  + +N   FR R +KNY FWVLSG+V  T F   ++AR   KIYK QSIA+SKI T IGGFV F R K   E
Sbjct:    1 MLKRSNIFSNNTINKKELKKIIEWAFKNYGQRKAAYFVDQLKEMGFEYATKSGISISIEDLRIPPVKIDLMRRASFDAFLTEAQAKNGEITEVERFQRIIYIWNTTSEELKERLIEFFKKTDPLNSVYIMAFSGARGNIAQVRQLVGMRGLMSDPSGRIIDRAIGANFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIISELDCKTERGIFLQESVKDKDEKGFLPLTELLNGRVLASSIFKPGTKKIIAFRNQEITSSLVENLIKANITKVLVRSPLTCECRRAVCQHCYGWNLALGNLVELGETVGLIAAQSIGEPGTQLTMRTFHTGGVFTSELIRQGRVNYSGYLDFMSELKLCPYRTEYGQAALLSENNSWLGIITYENKIIRLPIPEDTIIFSKNHKYITDNQVLLEAAPKMKEMTLGEKEIKYVNARHPGQIFLEENSCPQDFLTQNIAEFRKRGQKNYSFWVLSGEVLPTAFDTIIRARILEKIYKDQSIAQSKIVTTIGGFVRFSRNKSTQE 536          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37207.9812.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F7F5_9PHAE1.310e-31485.15DNA-directed RNA polymerase n=1 Tax=Protohalopteri... [more]
A0A8F0FAT1_9PHAE1.140e-23866.35DNA-directed RNA polymerase n=1 Tax=Desmarestia ac... [more]
A0A0R6M448_UNDPI2.590e-23165.04DNA-directed RNA polymerase n=32 Tax=Laminariales ... [more]
A0A8F0F804_9PHAE1.370e-23065.41DNA-directed RNA polymerase n=2 Tax=Laminariales T... [more]
D1GJH4_FUCVE1.970e-22862.97DNA-directed RNA polymerase subunit beta'' n=3 Tax... [more]
A0A2I4Q2M6_9PHAE3.390e-22363.26DNA-directed RNA polymerase n=1 Tax=Dictyopteris d... [more]
A0A8F0F9S6_9PHAE1.010e-22162.97DNA-directed RNA polymerase n=1 Tax=Chorda asiatic... [more]
A0A344PFA2_9PHAE4.120e-22063.87DNA-directed RNA polymerase n=5 Tax=Scytosiphonace... [more]
A0A110AQ85_9PHAE4.120e-21962.19DNA-directed RNA polymerase n=15 Tax=Sargassaceae ... [more]
D1J789_ECTSI1.290e-21863.43DNA-directed RNA polymerase n=2 Tax=Ectocarpus sil... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007083RNA polymerase Rpb1, domain 4PFAMPF05000RNA_pol_Rpb1_4coord: 90..159
e-value: 1.6E-13
score: 50.5
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 171..381
e-value: 5.4E-42
score: 144.1
IPR038120RNA polymerase Rpb1, funnel domain superfamilyGENE3D1.10.132.30coord: 58..195
e-value: 1.6E-50
score: 172.8
IPR042102RNA polymerase Rpb1, domain 3 superfamilyGENE3D1.10.274.100coord: 1..57
e-value: 9.9E-14
score: 53.9
IPR012756DNA-directed RNA polymerase, subunit beta''TIGRFAMTIGR02388TIGR02388coord: 7..524
e-value: 7.1E-170
score: 564.9
IPR007066RNA polymerase Rpb1, domain 3PFAMPF04983RNA_pol_Rpb1_3coord: 10..61
e-value: 8.6E-9
score: 35.5
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 8..398
NoneNo IPR availablePANTHERPTHR19376:SF43coord: 8..398
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 8..349

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37207contigH-paniculata_contig37207:2..1597 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37207.9812.1mRNA_H-paniculata_contig37207.9812.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig37207 2..1603 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig37207.9812.1 ID=prot_H-paniculata_contig37207.9812.1|Name=mRNA_H-paniculata_contig37207.9812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=532bp
MVNKSTIFFNSVINKKELKKIIEWAFKTHGPRKAAYLVDQLKEIGFDYAT
KSGISISIEDLKVPPAKKNLMDQANRDIFLTDAAIKNGEITEVEKFQKTI
FIWNSTSEYLKDELIEFLKKNDPLNSLYIMAFSGARGNISQVRQLVGMRG
LMSGPSGQIIEKAIGANFREGLSVTDYIVSSYGARKGLVDTAIKTADSGY
LTRRLVEVVQSIIVSELDCKTERGIILEVKSFNKSEMLSLLQEKAIGRLL
AFPIFPCGNNTPIANKDEQITSSLIEKVINLKVNKIMIRSPLTCECRRLV
CQHCYGLNLASDNLVDLGETVGLIAAQSIGEPGTQLTMRTFHTGGIFTSE
VKRQSRSGQLGYTYFSPEMKTIPFRTKYGQDALLVREASFISIINAAKEN
NTVPISPQTVILVNNNTWVQPNDILFDSIPGVKEKKVVLKEVKYIFARES
GKILLEEKNSPQKIINENFRNRVKKNYIFWVLSGQVFSTPFQIDLKARKF
TKIYKHQSIAESKITTPIGGFVYFCREKLMSE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007083RNA_pol_Rpb1_4
IPR007081RNA_pol_Rpb1_5
IPR038120Rpb1_funnel_sf
IPR042102RNA_pol_Rpb1_3_sf
IPR012756DNA-dir_RpoC2_beta_pp
IPR007066RNA_pol_Rpb1_3