prot_H-paniculata_contig3709.9783.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3709.9783.1
Unique Nameprot_H-paniculata_contig3709.9783.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length684
Homology
BLAST of mRNA_H-paniculata_contig3709.9783.1 vs. uniprot
Match: D8LB22_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB22_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 2.560e-61
Identity = 254/709 (35.83%), Postives = 321/709 (45.28%), Query Frame = 0
Query:   23 MGNFRRWDRFDADAVEAEIERNAQLEQATRARVIEEQSVLTHCEARAAALKSEAAVRTLRAKRGLRRGRQLPPHSTDRHHQHQPQQQQHPPARHNVDQDPNAPVNHNREVVEGEDDLAMLAFRAKERANMAELLARGLRHALGLRDEAVALAEAGEVYRGVNKARQCLQELDLAER---KLLHLSPPMAFKDNDTRGTDNTDTEPCAGSSAATVGDGSVGSKRSCCGEAASIPDSDSGARVAHDHSHHGYTXXXXXXXXXXQQRSVSTPSCEGASAAEHNSSISTGDAANVVNSDLAGDCEGGDAVKERERAMRVLRRARAMCRVAEGGCFLRKGRAAQATEVLRDLLLEDPGSVPAWVARGEAFVAMGIPLLAGLHFDRALALDPACDPATVHKENLRMKDAKTLAAEEA-------RSGVVAVVSECEPS--SIH---ARVLSSSVAGPSRFPKPSAAGEFLEDSTEQEGMEEKAGLDWWSSAETEGSARGLDVEHNEEAQGKKKEAAAKQA---DRHAVTTTAQPSLLSISASHSSTRCXXXXXXXXDCVNSTDTSARASALLAKACEEYRAGVVLHQEAFLMASSLKFRSVLSCLNQADSIATTATAPTVVRVAGKDKGEEGEA----------------------EADVPMVV------GGDDDGGGKAI--LRDVRLGCHLNIAAAVLLRRRDYESAVEHCTR 683
            M +F +WDRFDADA E EIER A +E+A R  + EEQ VL +C+ RAA LKSEA V  L+AKRG RR       +T                   V  D  AP N             + A  A+  A+ A  + +GLR  L LRDE VA AEAG  +RG   AR+CL EL  A++   K++ +  P      DT     + T+  AG++  T           CCG                    HG   XXXXXXXXX   SV T       A++    +    AA  V +   G     D  +E  +A+ VLRRA+A CRVAE  C LR GR AQ+TEVLR+LL ED  SV AWVARGE+F+AM  PLLAGLHFDRAL LD  C  A  HK+NLR   +K  +A  A       ++   A  ++  P   +IH      LSS V          +     +   E     E   +  +++  TE  A   +    E   G    AAA      DR A                             D   S     R    +A ACE+YRAGVVLHQE FL +S  +F  VL  L++A    T A       VA +DKG E  A                      EA     V      GG+   GG A+  +R++R+GCHLNIAA+ LLR+ D ESA  HCTR
Sbjct:    1 MTDFEKWDRFDADAAEKEIERKAVVEEAKRVIIAEEQLVLKYCQDRAARLKSEAVVSALKAKRGSRRRSATTTEATGN-------------TEDGVSLD-GAPKN-------------VGALVARTSADEAHAILKGLRRGLELRDEIVADAEAGNFHRGTRTARECLVELSAAQKLLGKVVAVVSP-----GDTGDNHGSATQGAAGATGGT-----------CCG--------------------HGGHDXXXXXXXXXXXXSVDTGHVGQGCASDSGGGVRGKSAATGVPAQADG--RENDEPEEIPKALEVLRRAKAACRVAEAACLLRGGRVAQSTEVLRELLFEDSKSVAAWVARGESFLAMNAPLLAGLHFDRALELDKGCVAAATHKQNLRHVSSKGTSAASAACADESHQTPAAAGDTDAAPQKMTIHHGSPTNLSSRVGCGGNVGDQGSLAVAGDVGVETPAPAEDGAI--FTTEATEDPAVAAETPDEEGNPGVAPTAAAXXXXXXDRAAARGV------------------------NDDGGSVTEDVRR--FVAAACEDYRAGVVLHQEGFLSSSRQRFLRVLEALDKA----TAAGLGMHAAVARQDKGGESAAGQSPSEKAGCGDGCEGLDGKSEEASSGSQVRATSKCGGERGKGGHAVTVVRNMRVGCHLNIAASFLLRKTDLESAAIHCTR 612          
BLAST of mRNA_H-paniculata_contig3709.9783.1 vs. uniprot
Match: A0A835YWL0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWL0_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.190e-6
Identity = 33/74 (44.59%), Postives = 43/74 (58.11%), Query Frame = 0
Query:  342 CRVAEGGCFLRKGRAAQATEVLRDLLLEDPGSVPAWVARGEAFVAMGIPLLAGLHFDRALALDPACDPATVHKE 415
            C   +G   L+ G  A A E LRD+LL +P    AW AR +AF   G+PLLA LH +RA+ LDP    A + K+
Sbjct:  216 CLALKGAAQLQLGHLAAAAEALRDVLLLEPARAAAWTARAQAFRLAGVPLLALLHAERAVRLDPDSAAAVLEKD 289          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3709.9783.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB22_ECTSI2.560e-6135.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YWL0_9STRA1.190e-644.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 295..455
e-value: 1.6E-6
score: 29.6
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 340..680
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 340..407
score: 9.294

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3709contigH-paniculata_contig3709:373..11590 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3709.9783.1mRNA_H-paniculata_contig3709.9783.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3709 373..11590 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3709.9783.1 ID=prot_H-paniculata_contig3709.9783.1|Name=mRNA_H-paniculata_contig3709.9783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=684bp
MACANRRATVLCGFQVDLQDIDMGNFRRWDRFDADAVEAEIERNAQLEQA
TRARVIEEQSVLTHCEARAAALKSEAAVRTLRAKRGLRRGRQLPPHSTDR
HHQHQPQQQQHPPARHNVDQDPNAPVNHNREVVEGEDDLAMLAFRAKERA
NMAELLARGLRHALGLRDEAVALAEAGEVYRGVNKARQCLQELDLAERKL
LHLSPPMAFKDNDTRGTDNTDTEPCAGSSAATVGDGSVGSKRSCCGEAAS
IPDSDSGARVAHDHSHHGYTHGHDHGGNHGQQRSVSTPSCEGASAAEHNS
SISTGDAANVVNSDLAGDCEGGDAVKERERAMRVLRRARAMCRVAEGGCF
LRKGRAAQATEVLRDLLLEDPGSVPAWVARGEAFVAMGIPLLAGLHFDRA
LALDPACDPATVHKENLRMKDAKTLAAEEARSGVVAVVSECEPSSIHARV
LSSSVAGPSRFPKPSAAGEFLEDSTEQEGMEEKAGLDWWSSAETEGSARG
LDVEHNEEAQGKKKEAAAKQADRHAVTTTAQPSLLSISASHSSTRCDGGG
GGGDDCVNSTDTSARASALLAKACEEYRAGVVLHQEAFLMASSLKFRSVL
SCLNQADSIATTATAPTVVRVAGKDKGEEGEAEADVPMVVGGDDDGGGKA
ILRDVRLGCHLNIAAAVLLRRRDYESAVEHCTR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom