prot_H-paniculata_contig36816.9728.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig36816.9728.1
Unique Nameprot_H-paniculata_contig36816.9728.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length63
Homology
BLAST of mRNA_H-paniculata_contig36816.9728.1 vs. uniprot
Match: A0A6H5KTK4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTK4_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 4.030e-40
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLRRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCGKVIGNKWETYLSLLQAD+NEGDALDELGL+RYCCRRMVLTHVDLIEKLLNYN
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63          
BLAST of mRNA_H-paniculata_contig36816.9728.1 vs. uniprot
Match: B8C402_THAPS (DNA directed RNA polymerase II subunit, 8.2kDa, rpb10-like protein (Fragment) n=3 Tax=Bacillariophyta TaxID=2836 RepID=B8C402_THAPS)

HSP 1 Score: 130 bits (327), Expect = 1.460e-38
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLRRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCGKVIGNKWETYL LLQAD++EGDALDELGLRRYCCRRM+LTHVDLIEKLLNYN
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLYLLQADYSEGDALDELGLRRYCCRRMMLTHVDLIEKLLNYN 63          
BLAST of mRNA_H-paniculata_contig36816.9728.1 vs. uniprot
Match: A0A7S1V7Q3_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1V7Q3_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.720e-38
Identity = 59/63 (93.65%), Postives = 63/63 (100.00%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLRRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCGKVIGNKWETYLSLLQAD++EGDALDELGL+RYCCRRM+LTHVDLIEKLLNYN
Sbjct:   33 MIIPVRCFTCGKVIGNKWETYLSLLQADYSEGDALDELGLKRYCCRRMLLTHVDLIEKLLNYN 95          
BLAST of mRNA_H-paniculata_contig36816.9728.1 vs. uniprot
Match: A0A1E7EXD3_9STRA (DNA-directed RNA polymerases I, II, and III subunit rpabc5 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EXD3_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.820e-38
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLRRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCGKVI NKWETYLSLLQADF+EGDALDELGL+RYCCRRM+LTHVDLIEKLLNYN
Sbjct:    1 MIIPVRCFTCGKVIANKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYN 63          
BLAST of mRNA_H-paniculata_contig36816.9728.1 vs. uniprot
Match: A0A7R9WWK7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WWK7_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.940e-38
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLRRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCGKVIGNKWETYLSLLQADF+EGDALDELGL+RYCCRRM+LTHVDLIEKLLNYN
Sbjct:   74 MIIPVRCFTCGKVIGNKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYN 136          
BLAST of mRNA_H-paniculata_contig36816.9728.1 vs. uniprot
Match: A0A7S4EET2_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EET2_9STRA)

HSP 1 Score: 130 bits (327), Expect = 4.780e-38
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLRRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCGKVI NKWETYLSLLQADF+EGDALDELGL+RYCCRRM+LTHVDLIEKLLNYN
Sbjct:   34 MIIPVRCFTCGKVIANKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYN 96          
BLAST of mRNA_H-paniculata_contig36816.9728.1 vs. uniprot
Match: A0A836CHW2_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHW2_9STRA)

HSP 1 Score: 129 bits (323), Expect = 7.850e-38
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLRRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCGKVIGNKWETYL LLQ+D +EGDALDELGL+RYCCRRMVLTHVDLIEKLLNYN
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLGLLQSDISEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63          
BLAST of mRNA_H-paniculata_contig36816.9728.1 vs. uniprot
Match: F0YLY9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLY9_AURAN)

HSP 1 Score: 128 bits (321), Expect = 1.730e-37
Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLRRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCGKVIGNKWE+YL LL+AD++EGDALDELGL+RYCCRRMVLTHVDLIEKLLNYN
Sbjct:    1 MIIPVRCFTCGKVIGNKWESYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63          
BLAST of mRNA_H-paniculata_contig36816.9728.1 vs. uniprot
Match: A0A8J2SAT8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SAT8_9STRA)

HSP 1 Score: 126 bits (317), Expect = 6.840e-37
Identity = 55/63 (87.30%), Postives = 62/63 (98.41%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLRRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCGKV+GNKW++YL LL+AD++EGDALDELGL+RYCCRRMVLTHVDLIEKLLNYN
Sbjct:    1 MIIPVRCFTCGKVVGNKWDSYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63          
BLAST of mRNA_H-paniculata_contig36816.9728.1 vs. uniprot
Match: A0A2P6TBS1_CHLSO (DNA-directed RNA polymerases and III subunit RPABC5 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TBS1_CHLSO)

HSP 1 Score: 124 bits (312), Expect = 6.880e-36
Identity = 54/63 (85.71%), Postives = 60/63 (95.24%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLRRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCGKVIGNKWETYL LLQA+++EGDA+D LGL RYCCRRM++THVDLIEKLLNYN
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLDLLQAEYSEGDAMDALGLNRYCCRRMIMTHVDLIEKLLNYN 63          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig36816.9728.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTK4_9PHAE4.030e-4096.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
B8C402_THAPS1.460e-3893.65DNA directed RNA polymerase II subunit, 8.2kDa, rp... [more]
A0A7S1V7Q3_9STRA1.720e-3893.65Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]
A0A1E7EXD3_9STRA1.820e-3893.65DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7R9WWK7_9STRA1.940e-3895.24Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S4EET2_9STRA4.780e-3893.65Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A836CHW2_9STRA7.850e-3892.06DNA-directed RNA polymerase I, II, and III subunit... [more]
F0YLY9_AURAN1.730e-3790.48Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SAT8_9STRA6.840e-3787.30Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2P6TBS1_CHLSO6.880e-3685.71DNA-directed RNA polymerases and III subunit RPABC... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10PFAMPF01194RNA_pol_Ncoord: 1..59
e-value: 8.5E-33
score: 112.5
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10PIRSFPIRSF005653RpoN_RPB10coord: 1..63
e-value: 2.9E-32
score: 108.4
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10PANTHERPTHR23431FAMILY NOT NAMEDcoord: 1..63
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10HAMAPMF_00250RNApol_arch_Ncoord: 1..63
score: 19.764
NoneNo IPR availableGENE3D1.10.10.60coord: 1..63
e-value: 8.3E-38
score: 130.3
NoneNo IPR availablePANTHERPTHR23431:SF5coord: 1..63
NoneNo IPR availablePRODOMPD006539coord: 9..63
e-value: 6.0E-18
score: 216.0
IPR020789RNA polymerases, subunit N, zinc binding sitePROSITEPS01112RNA_POL_N_8KDcoord: 2..11
IPR023580RNA polymerase subunit RPB10SUPERFAMILY46924RNA polymerase subunit RPB10coord: 1..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig36816contigH-paniculata_contig36816:1392..1580 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig36816.9728.1mRNA_H-paniculata_contig36816.9728.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig36816 1392..1580 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig36816.9728.1 ID=prot_H-paniculata_contig36816.9728.1|Name=mRNA_H-paniculata_contig36816.9728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MIIPVRCFTCGKVIGNKWETYLSLLQADFNEGDALDELGLRRYCCRRMVL
THVDLIEKLLNYN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000268RNAP_N/Rpb10
IPR020789RNA_pol_suN_Zn-BS
IPR023580RNA_pol_su_RPB10