prot_H-paniculata_contig3656.9676.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3656.9676.1
Unique Nameprot_H-paniculata_contig3656.9676.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length272
Homology
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BLAST of mRNA_H-paniculata_contig3656.9676.1 vs. uniprot
Match: A0A6H5JB63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB63_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 1.700e-61
Identity = 145/287 (50.52%), Postives = 183/287 (63.76%), Query Frame = 0 
Query:    1 QGVSSRVEGVSSRMSLRAKDVLSSMADDE-----SAGDKRNGDAS--------LNVINDQEVSESS-LAAAFAERT------ETRVVLRLAAILGQPVQLAEKVIAMNRLSNELGSAVTGGGRTAVASPTVLRAVAGPLVLLLRDAEHFDPFFANACAGCAQRLMETQGEAFAAELVGAGAAEALIPLLDPRFELIRIEFLALMESLLQAERREVCSRIVTVPSAMXXXXXXXXXXXXXXXXXXXXXLAAFLDPGESGIPPPPDLQNVIAFQDGFERLLKSATDFEV 267
            +GVSSRVEGVSSRMSLRAKD+LSS+ADD      S+    NG AS        L + N+   S +S +    A+        +   V RL A +    QLAEK++AMN+LSN LG    G G+   AS + L +VA  LV LLRDAE+FDPFFANAC  CAQ+L+E QGEAFAAE+V AGAA+AL+PLLDP+FELIRIE LA +E+LL AER +VCS+IV VP+ M                     LAAFL   + G+PPP +LQN +AF+DGF++L K+A   E+
Sbjct:   38 KGVSSRVEGVSSRMSLRAKDMLSSVADDHDNYNGSSSPHSNGSASGAARSNGTLGLFNNGSSSSASGILNGIADEVPAVPAVDEAEVSRLVASMDSTTQLAEKMVAMNKLSNVLGD---GAGQ---ASQSALCSVAEVLVALLRDAEYFDPFFANACIACAQQLLEAQGEAFAAEMVNAGAAQALLPLLDPKFELIRIEGLACLEALLVAERAKVCSQIVGVPTGMQALVDLLDDRWDEVRHQTVSLLAAFLTE-QGGVPPPVNLQNFVAFEDGFDKLFKAADAGEI 317
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BLAST of mRNA_H-paniculata_contig3656.9676.1 vs. uniprot
Match: D8LC55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC55_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 1.580e-51
Identity = 122/229 (53.28%), Postives = 150/229 (65.50%), Query Frame = 0 
Query:    1 QGVSSRVEGVSSRMSLRAKDVLSSMADDE-----SAGDKRNGDAS--------LNVINDQEVSESS-LAAAFAERT---------ETRVVLRLAAILGQPVQLAEKVIAMNRLSNELGSAVTGGGRTAVASPTVLRAVAGPLVLLLRDAEHFDPFFANACAGCAQRLMETQGEAFAAELVGAGAAEALIPLLDPRFELIRIEFLALMESLLQAERREVCSRIVTVPSAM 206
            +GVSSRVEGVSSRMSLRAKD+LSS+ADD      S+    NG A+        L + N+   S +S +    A+           +   V RL A +    QLAEK++AMN+LSN LG      G+   AS   L +VA  LV +LRDAE FDPFFANAC  CAQ+L+E QGEAFAAE+V AGAA+ALIPLLDP+FELIRIE LA +E+LL AER +VCS+IV VP+ M
Sbjct:   38 KGVSSRVEGVSSRMSLRAKDMLSSVADDHDNNNVSSSPHSNGSAAGAARSNGTLGLFNNGNSSSASGILNGIADEVPAXXXXXXXDEAEVSRLVASMDSTTQLAEKMVAMNKLSNVLGD---DAGQ---ASQMALCSVAEALVAMLRDAEFFDPFFANACIACAQQLLEAQGEAFAAEMVNAGAAQALIPLLDPKFELIRIEGLACLEALLVAERAKVCSQIVGVPTGM 260
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3656.9676.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JB63_9PHAE1.700e-6150.52Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LC55_ECTSI1.580e-5153.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 139..263
e-value: 2.6E-13
score: 51.8
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 115..237

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3656contigH-paniculata_contig3656:10453..15675 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3656.9676.1mRNA_H-paniculata_contig3656.9676.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3656 10453..15675 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3656.9676.1 ID=prot_H-paniculata_contig3656.9676.1|Name=mRNA_H-paniculata_contig3656.9676.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=272bp
QGVSSRVEGVSSRMSLRAKDVLSSMADDESAGDKRNGDASLNVINDQEVS
ESSLAAAFAERTETRVVLRLAAILGQPVQLAEKVIAMNRLSNELGSAVTG
GGRTAVASPTVLRAVAGPLVLLLRDAEHFDPFFANACAGCAQRLMETQGE
AFAAELVGAGAAEALIPLLDPRFELIRIEFLALMESLLQAERREVCSRIV
TVPSAMQALVELLDDRWDEVRHQAISLLAAFLDPGESGIPPPPDLQNVIA
FQDGFERLLKSATDFEVCRVV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold