prot_H-paniculata_contig2722.7446.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2722.7446.1
Unique Nameprot_H-paniculata_contig2722.7446.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length243
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2722.7446.1 vs. uniprot
Match: D7FQZ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQZ0_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 1.610e-50
Identity = 123/221 (55.66%), Postives = 145/221 (65.61%), Query Frame = 0 
Query:   22 SGNKEYFVDTKLVFRLKQFVGEQRKRGGPVTDDAAFDFLTDKFKEYIRKPQGPLRKSVGKALRKLVEGSPTPTRDKKKRGRDLENNAA-AGGLLGEQEQHQSPQPSPYQEKSGRQRSRKSRAWGKGGPD---------KSDQEELSDDELVAREAEASMQGRTHNLLNQSVAAGYRNGSGNGAKSSLSSGS----RDQSDGDNKNAKGTQKRSKRPRPGGP 228
            + N +YFVDTKL+FRLK+FV EQ++RG   T+DAA D+L DKFKEY+RKPQGPLRKSVGKALRK +EGSPTP RD KKR R  E     A GL   Q +HQ    SP +E +G                         KSD E+LS+DEL AREAEA MQGRTHNLLNQSVAAGYR  +G  ++  LS+ S    +DQ  G +   KG +KRSKRPRPGGP
Sbjct:   19 ANNSDYFVDTKLLFRLKRFVTEQQERGSLPTEDAALDYLLDKFKEYVRKPQGPLRKSVGKALRKCLEGSPTPPRDTKKRSRMPEGGGVEAVGLQQNQHRHQHQLSSPREETTGSSVXXXXXXXXXXXXXXXXTTEHNTKSDHEDLSEDELAAREAEAGMQGRTHNLLNQSVAAGYRT-NGASSRQGLSNSSPVDGKDQEGGGS--IKGEKKRSKRPRPGGP 236
[Close]
BLAST of mRNA_H-paniculata_contig2722.7446.1 vs. uniprot
Match: A0A835ZH15_9STRA (Putative ribosome biogenesis ATPase RIX7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH15_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.370e-9
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 0 
Query:   27 YFVDTKLVFRLKQFVGEQRKRGGPVTDDAAFDFLTDKFKEYIRKPQGPLRKSVGKALRKLVEGS 90
            Y  D KLVF ++Q+ GEQ  RG  VT+D A  +L +K++EY RKPQ  LR+SVG+AL+  +E +
Sbjct:   37 YPPDRKLVFHVRQYAGEQADRGLGVTEDGAVAYLLNKYREYQRKPQAQLRRSVGRALKAHLEAA 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2722.7446.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQZ0_ECTSI1.610e-5055.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZH15_9STRA2.370e-950.00Putative ribosome biogenesis ATPase RIX7 n=1 Tax=T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2722contigH-paniculata_contig2722:10331..16617 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2722.7446.1mRNA_H-paniculata_contig2722.7446.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2722 10331..16617 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2722.7446.1 ID=prot_H-paniculata_contig2722.7446.1|Name=mRNA_H-paniculata_contig2722.7446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=243bp
MSRGGGDNSGGGGGGRGGGGGSGNKEYFVDTKLVFRLKQFVGEQRKRGGP
VTDDAAFDFLTDKFKEYIRKPQGPLRKSVGKALRKLVEGSPTPTRDKKKR
GRDLENNAAAGGLLGEQEQHQSPQPSPYQEKSGRQRSRKSRAWGKGGPDK
SDQEELSDDELVAREAEASMQGRTHNLLNQSVAAGYRNGSGNGAKSSLSS
GSRDQSDGDNKNAKGTQKRSKRPRPGGPPLTPGRPPAAGGGGG
back to top