prot_H-paniculata_contig2663.7275.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2663.7275.1
Unique Nameprot_H-paniculata_contig2663.7275.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length266
Homology
BLAST of mRNA_H-paniculata_contig2663.7275.1 vs. uniprot
Match: A0A6H5JHR7_9PHAE (RuBisCo_chap_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR7_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 4.420e-81
Identity = 136/253 (53.75%), Postives = 171/253 (67.59%), Query Frame = 0
Query:   14 RLQTLACLVLFVMMTGAGAFICTPTLVQRNKHIINRPAAIAAAAFNNVANKGSCSGSCAGRGRVSMVSTVVPVSAQAAPSEGAHGMRSRFLPIEQLDDQAFAPRIVQVAGALREISVADVMAVGTSQPAEIGMWQYDFSDPHGPQMGTVAVPGCEAIFNMEEPVAIVSPNDDLNIILPEDEEAEVLLIVDRVDRNFVNSKFFLWNT-ADGLEVRFFESEPPLGYECVGRVGLVVVPFVKTMAQTFTGFEEEEF 265
            R   +AC +L   + GA AF+  PTL+         P   +AAA       GS S                     AAP EGAHGMRSRFLP++Q+DD+ FAPRIVQVAG L EI+VAD+MAVG +   E+GMWQYDFSDP GPQ+GTVAVPG E +F M+EPVAIV PNDDLNI +P DE+AE+LL++DR +R F   KFFLW+T +DGL VR+FE EP  G+ CVGRVG+V+ PF+ +MA+  +GFEEE++
Sbjct:    7 RTCVVACALL---LAGARAFVVNPTLLSSRA-----PGGGSAAAVGTSGRTGSLS--------------------MAAPLEGAHGMRSRFLPVDQMDDEVFAPRIVQVAGVLPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMPNDEKAEMLLVIDRANREFEFGKFFLWDTPSDGLVVRYFEGEPTPGFACVGRVGIVLAPFLPSMAKKSSGFEEEDY 231          
BLAST of mRNA_H-paniculata_contig2663.7275.1 vs. uniprot
Match: D7G2G1_ECTSI (RuBisCo_chap_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G1_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 1.130e-49
Identity = 81/111 (72.97%), Postives = 96/111 (86.49%), Query Frame = 0
Query:   90 AAPSEGAHGMRSRFLPIEQLDDQAFAPRIVQVAGALREISVADVMAVGTSQPAEIGMWQYDFSDPHGPQMGTVAVPGCEAIFNMEEPVAIVSPNDDLNIILPEDEEAEVLL 200
            AAP EG+HGMRSRFLP++Q+DD+ FAPRIVQVAGAL EI+VAD+MAVG +   E+GMWQYDFSDP GPQ+GTVAVPG E +FNM+EPVAIV PNDDLNI +P DE+ E+ L
Sbjct:   50 AAPLEGSHGMRSRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEMHL 160          
BLAST of mRNA_H-paniculata_contig2663.7275.1 vs. uniprot
Match: D7G2G3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G3_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 4.500e-48
Identity = 84/138 (60.87%), Postives = 105/138 (76.09%), Query Frame = 0
Query:  117 RIVQVAGALREISVADVMAVGTSQPAEIGMWQYDFSDPHGPQMGTVAVPGCEAIFNMEEPVAIVSPNDDLNIILPEDEEAEVLLIVDRVDRNFVNSKFFLWNT-ADGLEVRFFESEPPLGYECVGRVGLVVVPFVKTM 253
            R+ QVAGAL EI+VA +MAVG +   E+GMWQYDFSDP GPQ+GTVAVPG E +FNM+EPVAIV PNDDLNI +P DE+ E+       +R F   KFFLW+T ++GL VR+FE EP  G+ CVGRVG+V+ PF+ +M
Sbjct:    6 RMEQVAGALPEITVAYIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEM-------NREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGIVLAPFLPSM 136          
BLAST of mRNA_H-paniculata_contig2663.7275.1 vs. uniprot
Match: A0A836C9L5_9STRA (RuBisCo_chap_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9L5_9STRA)

HSP 1 Score: 160 bits (405), Expect = 4.410e-45
Identity = 81/170 (47.65%), Postives = 112/170 (65.88%), Query Frame = 0
Query:   95 GAHGMRSRFLPIEQLDDQAFAPRIVQVAGALREISVADVMAVGTSQPAEIGMWQYDFSDPHGPQMGTVAVPGCEAIFNMEEPVAIVSPNDDLNIILPEDEEAEVLLIVDRVDRNFVNSKFFLWNTAD-GLEVRFFESEPPLGYECVGRVGLVVVPFVKTMAQTFTGFEEE 263
            G HG  SRFLPI Q+  +   PR V +AGA   ++  D+ A  + +PAE G WQYDF+DP GPQMGTVA+PG + + ++ +PV IV+ +D L I LP+D   EVL +VDR + +F   KFF+W   D  + +R+F+ EP  GY+C+GRV  V VPF+  M +  +GFEEE
Sbjct:   53 GLHGTGSRFLPIVQIGAREHYPRTVCIAGAYPGLTAEDIAAPTSGEPAEQGTWQYDFTDPEGPQMGTVALPGGDTVTDLIDPVIIVAASDSLGISLPQDATTEVLAVVDRAEVDFQEGKFFVWQAPDKSVIIRWFKQEPQ-GYQCLGRVVFVHVPFLDVMKKPSSGFEEE 221          
BLAST of mRNA_H-paniculata_contig2663.7275.1 vs. uniprot
Match: A0A7S2FVK7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FVK7_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.230e-41
Identity = 77/172 (44.77%), Postives = 112/172 (65.12%), Query Frame = 0
Query:   92 PSEGAHGMRSRFLPIEQLDDQAFAPRIVQVAGALREISVADVMAVGTSQPAEIGMWQYDFSDPHGPQMGTVAVPGCEAIFNMEEPVAIVSPNDDLNIILPEDEEAEVLLIVDRVDRNFVNSKFFLWNTADGLEVRFFESEPPLGYECVGRVGLVVVPFVKTMAQTFTGFEEE 263
            P  G HG  S+F+P+ QLD + +APR VQVAG L  ++  +  A  ++  A  G WQ+DFSDP GPQMGT+A PG   +   E+PVAIV+ +  L+I L  + EAEV++++DR +  F N+KFFL+  A G     ++SE P G+E +GR+ LV +PF+ TM +  +G+ EE
Sbjct:   48 PPMGQHGTGSKFMPLTQLDSEEYAPRTVQVAGVLPGLTKEEFYAPQSAPAAPPGQWQFDFSDPEGPQMGTIAFPGSANVQACEDPVAIVTNSAHLHISLANNVEAEVVVLIDRANTEFYNNKFFLFADAAGTTYLKWQSELPEGHEVLGRIMLVQIPFLSTMGKKTSGWMEE 219          
BLAST of mRNA_H-paniculata_contig2663.7275.1 vs. uniprot
Match: A0A7S3PYS7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PYS7_9STRA)

HSP 1 Score: 142 bits (357), Expect = 5.950e-38
Identity = 71/173 (41.04%), Postives = 113/173 (65.32%), Query Frame = 0
Query:   97 HGMRSRFLPIEQLDDQAFAPRIVQVAGALREISVADVMAVGTSQPAEIGMWQYDFSDPHGPQMGTVAVPGCEAIFNMEEPVAIVSPNDDLNIILPE--DEEAEVLLIVDRVDRNFVNSKFFLWNT-ADGLEVRFF--ESEPPLGYECVGRVGLVVVPFVKTMAQTFTGFEEEE 264
            HG  S F+P+EQ+D++ FAPRI+Q+AG    ++  ++++V + QPAE G W YDFSDP GPQMGTVA+PGCE I   E+P  I++ +  L + LPE   +  ++L++VDR  + F   KF + +    G+ ++ +  ++E P G E +GRV  V VP++  M +  +GF+E++
Sbjct:   46 HGESSCFMPLEQVDEEYFAPRIIQIAGMYPGVTKEEILSVTSEQPAEKGQWAYDFSDPDGPQMGTVALPGCEIIDLCEDPAVIIAEHFALGVPLPEVLTDPVDLLVVVDRAKKTFAERKFLVMDVPGKGIVIKAYSTKAEMPEGGEVIGRVDFVQVPWLPCMKKKKSGFQEDD 218          
BLAST of mRNA_H-paniculata_contig2663.7275.1 vs. uniprot
Match: A0A6U0INQ8_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0INQ8_9STRA)

HSP 1 Score: 132 bits (331), Expect = 5.060e-34
Identity = 72/173 (41.62%), Postives = 109/173 (63.01%), Query Frame = 0
Query:   97 HGMRSRFLPIEQLDDQAFAPRIVQVAGALREISVADVMAVGTSQPAEIGMWQYDFSDPHGPQMGTVAVPGCEAIFNMEEPVAIVSPNDDLNIILPED--EEAEVLLIVDRVDRNFVNSKFFLW-NTADGLEVRFFES--EPPLGYECVGRVGLVVVPFVKTMAQTFTGFEEEE 264
            HG +S FLP++QLD   +APRIVQ+AGA   I+  ++ AV + +P+  G W YDFSDP GPQ+GTVA+ G + +   E+ VAI++ +  L + LP    E  +V+++VDR    F   KF ++ N A G+E+  F++  E P G   +G+V LV +P++  M  T +GF EE+
Sbjct:   51 HGDQSCFLPLKQLDQDYYAPRIVQIAGAYPGITAEEIAAVSSEEPSVPGQWTYDFSDPDGPQLGTVALEGSQVVHGCEDAVAIIAEHPSLGVPLPATLAEPVDVIVLVDRARNYFSERKFLVFDNPAAGVEIGAFQTKTEIPEGSTILGQVVLVQMPWLPAMKPTKSGFMEED 223          
BLAST of mRNA_H-paniculata_contig2663.7275.1 vs. uniprot
Match: B7FTB2_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FTB2_PHATC)

HSP 1 Score: 129 bits (324), Expect = 2.530e-33
Identity = 73/185 (39.46%), Postives = 116/185 (62.70%), Query Frame = 0
Query:   86 VSAQAAPSEGA-HGMRSRFLPIEQLDDQAFAPRIVQVAGALREISVADVMAVGTSQPAEIGMWQYDFSDPHGPQMGTVAVPGCEAIFNMEEPVAIVSPNDDLNIILPED--EEAEVLLIVDRVDRNFVNSKFFLWNTAD-GLEVRFFES--EPPLGYECVGRVGLVVVPFVKTMAQTFTGFEEEE 264
            +SA A  + G+ HG  S FLP+ QLD   +APRIVQ+AGA   ++  +   V + + AE+G W YDFSDP GPQ+GTVA+ G E +    +PVAI++ +  + + LP++  E  +++++VDR  + F    F + +T + G+ +R + +  E P G E +G+V LV +P++ +MA T TGF E +
Sbjct:    8 LSATATDNGGSIHGQNSCFLPLRQLDQDYYAPRIVQIAGAYPGLTKEEFYGVQSEEAAEVGQWSYDFSDPEGPQVGTVAMDGSELVSFCPDPVAIIAEHSSVGVDLPKEITEPVDLIVLVDRSRKGFSERTFLVVDTPEEGVLIRAYGAKVEIPDGSEILGQVLLVQIPWLPSMAPTKTGFMEAD 192          
BLAST of mRNA_H-paniculata_contig2663.7275.1 vs. uniprot
Match: A0A7R9YFY1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFY1_9STRA)

HSP 1 Score: 126 bits (316), Expect = 7.080e-32
Identity = 69/170 (40.59%), Postives = 100/170 (58.82%), Query Frame = 0
Query:   94 EGAHGMRSRFLPIEQLDDQAFAPRIVQVAGALREISVADVMAVGTSQPAEIGMWQYDFSDPHGPQMGTVAVPGCEAIFNMEEPVAIVSPNDDLNIILPEDEEAEVLLIVDRVDRNFVNSKFFLWNTAD-GLEVRFFESEPPLGYECVGRVGLVVVPFVKTMAQTFTGFEE 262
            EG HG  SRFLP++Q+    + PRIV++ G    +SV ++ A     P E G W YDF       MG VA+PGC A+   ++PVA+++    L + L E  EAE +++VDR D  F + KF+ ++  D GL    +  +PP G+  VGRV  V+VPF++ MA + TGF E
Sbjct:   47 EGLHGTGSRFLPLQQMQGSDYLPRIVRICGTYPGLSVDELTAAEGVPPVENGNWVYDFMGEEASAMGVVAIPGCRAVNEAKDPVALIASAKSLGVQLLE--EAECVVVVDRQDVEFDSRKFYAFSAPDSGLISICWRPQPPAGWPIVGRVVYVMVPFLQYMAASKTGFVE 214          
BLAST of mRNA_H-paniculata_contig2663.7275.1 vs. uniprot
Match: A0A7S2RK67_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RK67_9STRA)

HSP 1 Score: 127 bits (318), Expect = 8.920e-32
Identity = 70/170 (41.18%), Postives = 96/170 (56.47%), Query Frame = 0
Query:   95 GAHGMRSRFLPIEQLDDQAFAPRIVQVAGALREISVADVMAVGTSQPAEIGMWQYDFSDPHGPQMGTVAVPGCEAIFNMEEPVAIVSPNDDLNIILPEDEEAEVLLIVDRVDRNFVNSKFFLWNTADGLEVRFFESEPPLGYECVGRVGLVVVPFVKTMAQTFTGFEEEE 264
            G HG  SRF+P+ QL     APR V VAG    I+V+++MA  +S    +G W +DF+DP GPQ+GTVA+P   ++   E+PV +VS ++ L + L  D  AEVL++VDR    F   +FF +   DG     +  E P G    GRV LV  P +  M    +GF EEE
Sbjct:   81 GLHGTGSRFIPLVQLGADEVAPRTVPVAGMYPGITVSELMAPESSPAPNLGTWHFDFTDPEGPQLGTVALPAANSVHLAEDPVVLVSKSEVLGLNLSNDVLAEVLVVVDRARTKFQRDRFFAFAAPDGSVEIGWRDELPEGMVVAGRVELVYSPHLPGMESRASGFLEEE 250          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2663.7275.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHR7_9PHAE4.420e-8153.75RuBisCo_chap_C domain-containing protein n=1 Tax=E... [more]
D7G2G1_ECTSI1.130e-4972.97RuBisCo_chap_C domain-containing protein n=1 Tax=E... [more]
D7G2G3_ECTSI4.500e-4860.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C9L5_9STRA4.410e-4547.65RuBisCo_chap_C domain-containing protein n=1 Tax=T... [more]
A0A7S2FVK7_9STRA1.230e-4144.77Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3PYS7_9STRA5.950e-3841.04Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6U0INQ8_9STRA5.060e-3441.62Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
B7FTB2_PHATC2.530e-3339.46Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7R9YFY1_9STRA7.080e-3240.59Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2RK67_9STRA8.920e-3241.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR040858Rubisco accumulation factor 1, C-terminalPFAMPF18087RuBisCo_chap_Ccoord: 104..248
e-value: 5.8E-15
score: 55.2
IPR037494Rubisco accumulation factor 1PANTHERPTHR35299FAMILY NOT NAMEDcoord: 102..248
NoneNo IPR availablePANTHERPTHR35299:SF1coord: 102..248
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..265
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 26..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..32
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..32
score: 0.568
NoneNo IPR availableTMHMMTMhelixcoord: 15..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2663contigH-paniculata_contig2663:1054..9010 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2663.7275.1mRNA_H-paniculata_contig2663.7275.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2663 923..9040 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2663.7275.1 ID=prot_H-paniculata_contig2663.7275.1|Name=mRNA_H-paniculata_contig2663.7275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=266bp
MSSSFSSCSSAMLRLQTLACLVLFVMMTGAGAFICTPTLVQRNKHIINRP
AAIAAAAFNNVANKGSCSGSCAGRGRVSMVSTVVPVSAQAAPSEGAHGMR
SRFLPIEQLDDQAFAPRIVQVAGALREISVADVMAVGTSQPAEIGMWQYD
FSDPHGPQMGTVAVPGCEAIFNMEEPVAIVSPNDDLNIILPEDEEAEVLL
IVDRVDRNFVNSKFFLWNTADGLEVRFFESEPPLGYECVGRVGLVVVPFV
KTMAQTFTGFEEEEF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040858Raf1_C
IPR037494RAF1