prot_H-paniculata_contig26374.7201.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig26374.7201.1
Unique Nameprot_H-paniculata_contig26374.7201.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length131
Homology
BLAST of mRNA_H-paniculata_contig26374.7201.1 vs. uniprot
Match: A0A1Q3CNC2_CEPFO (RVT_2 domain-containing protein (Fragment) n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3CNC2_CEPFO)

HSP 1 Score: 68.9 bits (167), Expect = 4.500e-12
Identity = 42/128 (32.81%), Postives = 63/128 (49.22%), Query Frame = 0
Query:    1 MEEEWRALVKNGTWESKVPGRLPVGRKAIRTKWIFKQKLKEDSCVARYKARLVSQAFH------------------------TLAAEHDFELESMDVDAAYVNVPV-EELYVKLPSCFLLPPETHHLC 103
            M EE+ AL++NGTW    P   P+GR  I +KW+FK K   D  V RYKARLV++ +                          LA    + +  +DV  A+++  + E+LY++ P  F+ P   HH+C
Sbjct:    1 MNEEFNALLRNGTWVLTPP---PIGRNIIGSKWVFKIKQHSDGSVERYKARLVAKGYSQEPGLDYADTFSPVVKPTTIRTVLALAVSSAWPIRQLDVHNAFLHGNIFEDLYMQQPPGFIHPQFPHHVC 125          
BLAST of mRNA_H-paniculata_contig26374.7201.1 vs. uniprot
Match: UPI001CC6C1BC (uncharacterized protein LOC110624291 n=1 Tax=Manihot esculenta TaxID=3983 RepID=UPI001CC6C1BC)

HSP 1 Score: 68.6 bits (166), Expect = 7.390e-11
Identity = 40/128 (31.25%), Postives = 68/128 (53.12%), Query Frame = 0
Query:    1 MEEEWRALVKNGTWESKVPGRLPVGRKAIRTKWIFKQKLKEDSCVARYKARLVSQAFH------------------------TLAAEHDFELESMDVDAAYVNVPVEE-LYVKLPSCFLLPPETHHLC 103
            M+EE+ AL+ NGTW+   P   P  +  I  KW+++ KLK D  V RYKARLV++ +H                         LA +HD+ ++ MD+  A+++  ++E +++  P  F+ P + +H+C
Sbjct:  217 MQEEYNALISNGTWQLVPP--TPT-QNVIGCKWVYRTKLKTDGSVDRYKARLVAKGYHQRPGIDFDDTYSPVVKPSTIRLMLALALQHDWFVDQMDISNAFLHGNLDEDVFMIQPQGFIDPHKPNHVC 341          
BLAST of mRNA_H-paniculata_contig26374.7201.1 vs. uniprot
Match: A5AZT5_VITVI (Integrase catalytic domain-containing protein n=2 Tax=Vitis vinifera TaxID=29760 RepID=A5AZT5_VITVI)

HSP 1 Score: 68.2 bits (165), Expect = 9.970e-11
Identity = 46/116 (39.66%), Postives = 61/116 (52.59%), Query Frame = 0
Query:    1 MEEEWRALVKNGTWESKVPGRLPVGRKAIRTKWIFKQKLKEDSCVARYKARLVSQAFH------------------------TLAAEHDFELESMDVDAAYVNVPVEE-LYVKLPS 91
            ++EE RAL KNGTWE      LP G+K IR KWIF  K K D  V RYKARLV++ F                         +LAA  D+ L  +DV  A++N  +EE +Y+ +P+
Sbjct:  942 VDEEVRALEKNGTWEITD---LPRGKKPIRCKWIFTIKYKADGNVDRYKARLVAKGFTQSYGIDYQETFAPVAKLNTVRVLLSLAANLDWSLHQLDVKNAFLNGDLEEEVYMDIPA 1054          
BLAST of mRNA_H-paniculata_contig26374.7201.1 vs. uniprot
Match: A0A438IEM7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IEM7_VITVI)

HSP 1 Score: 68.2 bits (165), Expect = 9.980e-11
Identity = 45/116 (38.79%), Postives = 61/116 (52.59%), Query Frame = 0
Query:    1 MEEEWRALVKNGTWESKVPGRLPVGRKAIRTKWIFKQKLKEDSCVARYKARLVSQAFH------------------------TLAAEHDFELESMDVDAAYVNVPVEE-LYVKLPS 91
            ++EE RAL KNGTWE      LP G+K +R KWIF  K K D  V RYKARLV++ F                         +LAA  D+ L  +DV  A++N  +EE +Y+ +P+
Sbjct:  920 VDEEVRALEKNGTWEITD---LPRGKKPVRCKWIFTVKYKADGNVDRYKARLVAKGFTQSYGIDYQETFAPVAKLNTVRVLLSLAANLDWSLHQLDVKNAFLNGDLEEEVYMDIPA 1032          
BLAST of mRNA_H-paniculata_contig26374.7201.1 vs. uniprot
Match: A0A438GX06_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GX06_VITVI)

HSP 1 Score: 67.4 bits (163), Expect = 1.800e-10
Identity = 46/128 (35.94%), Postives = 64/128 (50.00%), Query Frame = 0
Query:    1 MEEEWRALVKNGTWESKVPGRLPVGRKAIRTKWIFKQKLKEDSCVARYKARLVSQAFH------------------------TLAAEHDFELESMDVDAAYVNVPVEE-LYVKLPSCFLLPPETHHLC 103
            ++EE RAL KNGTWE      LP G+K +  KWIF  K K D  V RYKARLV++ F                         +LAA  D+ L  +DV  A++N  +EE +Y+ +P+ F      + +C
Sbjct:  437 VDEEVRALEKNGTWEITD---LPRGKKPVGCKWIFTVKYKADGNVDRYKARLVAKGFTQSYGIDYQETFALVAKLNTVRVLLSLAANLDWSLHQLDVKNAFLNGDLEEEVYMDIPAVFETTSNFNKVC 561          
BLAST of mRNA_H-paniculata_contig26374.7201.1 vs. uniprot
Match: A0A5N6NSI7_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NSI7_9ASTR)

HSP 1 Score: 67.0 bits (162), Expect = 2.430e-10
Identity = 43/124 (34.68%), Postives = 66/124 (53.23%), Query Frame = 0
Query:    1 MEEEWRALVKNGTWESKVPGRLPVGRKAIRTKWIFKQKLKEDSCVARYKARLVSQAFH------------------------TLAAEHDFELESMDVDAAYVNVPVEE-LYVKLPSCFLLPPET 99
            ME+E +AL +NGTW       LPVG+KAI +KW++K K K +  V RYKARLV++ +                          LA + D+ +  +DV+ A+++  +EE +Y+K+P  F    ET
Sbjct:  317 MEKEIKALEQNGTWTL---AELPVGKKAIDSKWVYKVKHKPNGEVERYKARLVAKGYTQLEGVDYQDTFAPVAKLVTMRTLLALAVKRDWHIHQLDVNNAFLHGDLEEEVYMKVPQGFSNKEET 437          
BLAST of mRNA_H-paniculata_contig26374.7201.1 vs. uniprot
Match: A0A2N9F8Q2_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F8Q2_FAGSY)

HSP 1 Score: 66.2 bits (160), Expect = 3.290e-10
Identity = 39/129 (30.23%), Postives = 63/129 (48.84%), Query Frame = 0
Query:    1 MEEEWRALVKNGTWESKVPGRLPVGRKAIRTKWIFKQKLKEDSCVARYKARLVSQAFH------------------------TLAAEHDFELESMDVDAAYVN-VPVEELYVKLPSCFLLPPETHHLCA 104
            M++E+ AL+K GTW    P   P     I  KW++K K   D  +ARYKARLV++ FH                        +LA   ++ L  +DV  A+++ +  EE+Y+  P  ++ P   H++C+
Sbjct:    1 MQDEYDALIKQGTWSLVPP---PTNHNIIGCKWVYKLKTHSDGSIARYKARLVAKGFHQQQGIDFDVTFSPVIKPPTVRMILSLAVSLNWPLRQIDVSNAFLHGILKEEVYMSQPLGYIDPQHPHYVCS 126          
BLAST of mRNA_H-paniculata_contig26374.7201.1 vs. uniprot
Match: A0A5N6PLJ3_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PLJ3_9ASTR)

HSP 1 Score: 66.6 bits (161), Expect = 3.320e-10
Identity = 39/128 (30.47%), Postives = 63/128 (49.22%), Query Frame = 0
Query:    1 MEEEWRALVKNGTWESKVPGRLPVGRKAIRTKWIFKQKLKEDSCVARYKARLVSQAFH------------------------TLAAEHDFELESMDVDAAYVNVPVEE-LYVKLPSCFLLPPETHHLC 103
            M EE+ ALV+NGTW   +P   P     +  KW++K K  +   V RYKARLV++ +H                        +LA  H + L  +DV  A+++  ++E +Y++ P  F+ P +  H+C
Sbjct:  351 MNEEYSALVRNGTWSLVLP---PPNTNIVDCKWVYKVKRDQHGAVKRYKARLVAKGYHQQAGIDFTDTFSPVVKSTTIRVVLSLATTHQWSLRQLDVQNAFLHRDLKETVYLRQPQGFIDPNKPTHVC 475          
BLAST of mRNA_H-paniculata_contig26374.7201.1 vs. uniprot
Match: A5BEZ8_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BEZ8_VITVI)

HSP 1 Score: 65.9 bits (159), Expect = 3.970e-10
Identity = 41/128 (32.03%), Postives = 68/128 (53.12%), Query Frame = 0
Query:    1 MEEEWRALVKNGTWESKVPGRLPVGRKAIRTKWIFKQKLKEDSCVARYKARLVSQAFH------------------------TLAAEHDFELESMDVDAAYVNVPV-EELYVKLPSCFLLPPETHHLC 103
            M +E+ AL++N TW S V   LPVGRK I  KWIF+ K   D  + +YK RLV++ FH                        T+A   +++++ +D++ A++N  + EE+Y++ P  F+    +H +C
Sbjct:   87 MIDEYSALLRNNTW-SLVD--LPVGRKVIGCKWIFRVKDNPDGSIKKYKXRLVAKEFHQTXXFDYTKTFSPVVKPTTIXVALTIALSRNWKIQQLDINNAFLNGDLQEEVYMEQPKGFIEKSTSHLVC 211          
BLAST of mRNA_H-paniculata_contig26374.7201.1 vs. uniprot
Match: A0A438HW27_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HW27_VITVI)

HSP 1 Score: 66.2 bits (160), Expect = 4.370e-10
Identity = 44/116 (37.93%), Postives = 60/116 (51.72%), Query Frame = 0
Query:    1 MEEEWRALVKNGTWESKVPGRLPVGRKAIRTKWIFKQKLKEDSCVARYKARLVSQAFH------------------------TLAAEHDFELESMDVDAAYVNVPVEE-LYVKLPS 91
            ++EE RAL KNGTWE      LP G+K +  KWIF  K K D  V RYKARLV++ F                         +LAA  D+ L  +DV  A++N  +EE +Y+ +P+
Sbjct:  378 VDEEVRALEKNGTWEIT---NLPRGKKPVGCKWIFTVKYKADGNVDRYKARLVAKGFTQSYGIDYQETFAPVAKLNTVRVLLSLAANLDWSLHQLDVKNAFLNGDLEEEVYMDIPA 490          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26374.7201.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Q3CNC2_CEPFO4.500e-1232.81RVT_2 domain-containing protein (Fragment) n=1 Tax... [more]
UPI001CC6C1BC7.390e-1131.25uncharacterized protein LOC110624291 n=1 Tax=Manih... [more]
A5AZT5_VITVI9.970e-1139.66Integrase catalytic domain-containing protein n=2 ... [more]
A0A438IEM7_VITVI9.980e-1138.79Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GX06_VITVI1.800e-1035.94Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6NSI7_9ASTR2.430e-1034.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9F8Q2_FAGSY3.290e-1030.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6PLJ3_9ASTR3.320e-1030.47Integrase catalytic domain-containing protein n=1 ... [more]
A5BEZ8_VITVI3.970e-1032.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438HW27_VITVI4.370e-1037.93Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 22..64
e-value: 2.6E-7
score: 30.5
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..91
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 1..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26374contigH-paniculata_contig26374:2180..2643 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26374.7201.1mRNA_H-paniculata_contig26374.7201.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig26374 1186..2655 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig26374.7201.1 ID=prot_H-paniculata_contig26374.7201.1|Name=mRNA_H-paniculata_contig26374.7201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
MEEEWRALVKNGTWESKVPGRLPVGRKAIRTKWIFKQKLKEDSCVARYKA
RLVSQAFHTLAAEHDFELESMDVDAAYVNVPVEELYVKLPSCFLLPPETH
HLCAACVKACIASSRVAETGLTFLTIFLLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like