prot_H-paniculata_contig2478.6726.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2478.6726.1
Unique Nameprot_H-paniculata_contig2478.6726.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length156
Homology
BLAST of mRNA_H-paniculata_contig2478.6726.1 vs. uniprot
Match: A0A6H5JYA8_9PHAE (Sm domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYA8_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 2.550e-47
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 0
Query:   73 APAQTGSTKKSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISTQKRR 155
            APAQTG  K+SPSDFLKTVLGRPVVVKLNSGIDYRGVL CLDGYMNIAMEQTEEYVNGQLKA +GDCFIRGNNVLYISTQ+RR
Sbjct:   63 APAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR 145          
BLAST of mRNA_H-paniculata_contig2478.6726.1 vs. uniprot
Match: A0A7S2ATC3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ATC3_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.450e-43
Identity = 76/93 (81.72%), Postives = 79/93 (84.95%), Query Frame = 0
Query:   64 TVAQAIAVAAPAQTGSTKK-SPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISTQKRR 155
            T A A +  A   T S+KK  PSDFLKTVLGRPVVVKLNSG DYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYIS  +RR
Sbjct:   15 TAAPANSTPANTVTSSSKKCQPSDFLKTVLGRPVVVKLNSGTDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISASRRR 107          
BLAST of mRNA_H-paniculata_contig2478.6726.1 vs. uniprot
Match: A0A7S2IZG2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IZG2_9EUKA)

HSP 1 Score: 148 bits (373), Expect = 1.880e-43
Identity = 75/86 (87.21%), Postives = 78/86 (90.70%), Query Frame = 0
Query:   70 AVAAPAQTGSTKKSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISTQKRR 155
            A AAPA     K +PSDFLKTVLGRPVVVKLNSG+DYRGVLACLDGYMNIAMEQTEEYV+GQLKAKYGD FIRGNNVLYISTQKRR
Sbjct:   23 APAAPA----AKSNPSDFLKTVLGRPVVVKLNSGVDYRGVLACLDGYMNIAMEQTEEYVDGQLKAKYGDTFIRGNNVLYISTQKRR 104          
BLAST of mRNA_H-paniculata_contig2478.6726.1 vs. uniprot
Match: A0A836CMP0_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMP0_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.720e-43
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 0
Query:   75 AQTGSTKKSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISTQKRR 155
            A+  S  KSPSDFLK VLGR V+VKLNSG+DYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYIST KRR
Sbjct:   37 AKAASKVKSPSDFLKGVLGRSVIVKLNSGVDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISTTKRR 117          
BLAST of mRNA_H-paniculata_contig2478.6726.1 vs. uniprot
Match: A0A7S2UQ42_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQ42_9STRA)

HSP 1 Score: 147 bits (370), Expect = 4.910e-43
Identity = 69/75 (92.00%), Postives = 73/75 (97.33%), Query Frame = 0
Query:   81 KKSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISTQKRR 155
            K+SPSDFLK+VLGRPV V+LNSG DYRGVLACLDGYMNIAMEQTEEYV+GQLKAKYGDCFIRGNNVLYISTQKRR
Sbjct:   28 KRSPSDFLKSVLGRPVSVRLNSGTDYRGVLACLDGYMNIAMEQTEEYVDGQLKAKYGDCFIRGNNVLYISTQKRR 102          
BLAST of mRNA_H-paniculata_contig2478.6726.1 vs. uniprot
Match: V4A3S6_LOTGI (Sm domain-containing protein n=19 Tax=Protostomia TaxID=33317 RepID=V4A3S6_LOTGI)

HSP 1 Score: 145 bits (365), Expect = 1.420e-42
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = 0
Query:   79 STKKSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISTQKRR 155
            S K++PSDFLK ++GRPVVVKLNSG+DYRGVLACLDGYMNIA+EQTEEYVNGQLK KYGD FIRGNNVLYISTQKRR
Sbjct:    2 SNKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR 78          
BLAST of mRNA_H-paniculata_contig2478.6726.1 vs. uniprot
Match: A0A251T2L1_HELAN (Putative U6 snRNA-associated Sm-like protein LSm6 n=11 Tax=Pentapetalae TaxID=1437201 RepID=A0A251T2L1_HELAN)

HSP 1 Score: 144 bits (363), Expect = 4.460e-42
Identity = 69/84 (82.14%), Postives = 75/84 (89.29%), Query Frame = 0
Query:   71 VAAPAQTGSTKKSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISTQKR 154
            VAA  +  ST K+PSDFLK++ GRPVVVKLNSG+DYRG+LACLDGYMNIAMEQTEEYVNGQLK KYGD FIRGNNVLYIST KR
Sbjct:    5 VAAAEKGSSTTKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 88          
BLAST of mRNA_H-paniculata_contig2478.6726.1 vs. uniprot
Match: LSM6_HUMAN (U6 snRNA-associated Sm-like protein LSm6 n=406 Tax=Sarcopterygii TaxID=8287 RepID=LSM6_HUMAN)

HSP 1 Score: 143 bits (361), Expect = 5.930e-42
Identity = 66/75 (88.00%), Postives = 72/75 (96.00%), Query Frame = 0
Query:   81 KKSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISTQKRR 155
            K++PSDFLK ++GRPVVVKLNSG+DYRGVLACLDGYMNIA+EQTEEYVNGQLK KYGD FIRGNNVLYISTQKRR
Sbjct:    5 KQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR 79          
BLAST of mRNA_H-paniculata_contig2478.6726.1 vs. uniprot
Match: K4FT18_CALMI (U6 snRNA-associated Sm-like protein LSm6 n=12 Tax=Vertebrata TaxID=7742 RepID=K4FT18_CALMI)

HSP 1 Score: 143 bits (361), Expect = 5.930e-42
Identity = 66/75 (88.00%), Postives = 72/75 (96.00%), Query Frame = 0
Query:   81 KKSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISTQKRR 155
            K++PSDFLK ++GRPVVVKLNSG+DYRGVLACLDGYMNIA+EQTEEYVNGQLK KYGD FIRGNNVLYISTQKRR
Sbjct:    5 KQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR 79          
BLAST of mRNA_H-paniculata_contig2478.6726.1 vs. uniprot
Match: UPI0003C16199 (U6 snRNA-associated Sm-like protein LSm6 isoform X3 n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=UPI0003C16199)

HSP 1 Score: 143 bits (361), Expect = 6.290e-42
Identity = 66/75 (88.00%), Postives = 72/75 (96.00%), Query Frame = 0
Query:   81 KKSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISTQKRR 155
            K++PSDFLK ++GRPVVVKLNSG+DYRGVLACLDGYMNIA+EQTEEYVNGQLK KYGD FIRGNNVLYISTQKRR
Sbjct:    7 KQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR 81          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2478.6726.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYA8_9PHAE2.550e-4791.57Sm domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S2ATC3_9STRA1.450e-4381.72Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2IZG2_9EUKA1.880e-4387.21Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A836CMP0_9STRA2.720e-4387.65Sm domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7S2UQ42_9STRA4.910e-4392.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]
V4A3S6_LOTGI1.420e-4287.01Sm domain-containing protein n=19 Tax=Protostomia ... [more]
A0A251T2L1_HELAN4.460e-4282.14Putative U6 snRNA-associated Sm-like protein LSm6 ... [more]
LSM6_HUMAN5.930e-4288.00U6 snRNA-associated Sm-like protein LSm6 n=406 Tax... [more]
K4FT18_CALMI5.930e-4288.00U6 snRNA-associated Sm-like protein LSm6 n=12 Tax=... [more]
UPI0003C161996.290e-4288.00U6 snRNA-associated Sm-like protein LSm6 isoform X... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 86..151
e-value: 2.5E-21
score: 86.8
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 86..150
e-value: 2.7E-18
score: 65.4
NoneNo IPR availableGENE3D2.30.30.100coord: 75..154
e-value: 6.5E-32
score: 110.9
NoneNo IPR availablePANTHERPTHR11021:SF4coord: 74..154
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 74..154
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 84..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2478contigH-paniculata_contig2478:3686..12168 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2478.6726.1mRNA_H-paniculata_contig2478.6726.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2478 3620..12439 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2478.6726.1 ID=prot_H-paniculata_contig2478.6726.1|Name=mRNA_H-paniculata_contig2478.6726.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
MGDASPPPPPPPPEDRPESAGSNLQEKEDESDRNQNQQASQQKSGQQPAQ
QQDSMPVAAAPGPTVAQAIAVAAPAQTGSTKKSPSDFLKTVLGRPVVVKL
NSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYIS
TQKRR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016487Lsm6/sSmF
IPR010920LSM_dom_sf