prot_H-paniculata_contig2335.6292.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2335.6292.1
Unique Nameprot_H-paniculata_contig2335.6292.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length349
Homology
BLAST of mRNA_H-paniculata_contig2335.6292.1 vs. uniprot
Match: D8LRK7_ECTSI (YqgFc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRK7_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 3.890e-66
Identity = 132/253 (52.17%), Postives = 160/253 (63.24%), Query Frame = 0
Query:  114 VHPSAAWLDDPSLNLKKAPRA-----------PLVPTMAVDYGLSRVGLAVSVGISPRVLHGVSNRGSDLEVVKQILVRARGEGIRKIVVGFPLMRDGEECEMCHIVRSFALLLADAGAVSNTPTTVYLWDERFSSAQAGAMLDRHGGGMSKKIEIDSLAASLILTHYFDAGG-EGAEKVMAS-GQRTPELLAAAGVTGGSGEQGQ------QELFGEDLKRKRDEERAESTRLIASGAYVPFMKPPRSKRKR 347
            VHPS +WL  P  +   A +            P   T+ VDYG  RVGLA+ VGISPR + GV+N GSDLEV +Q+LVRARGEGIR IVVG PL R+G E EMC IVR FA +LAD GA S     V+LWDERFSSAQA AMLD +GGGMS K+EIDSLAASLIL H+F+ GG   AEKV  S G  T E+  AAG  G  GE+ +      ++ +GE  +R+  E R ES R  A+G      +  R +R+R
Sbjct:   44 VHPSVSWLYPPKPSSTTAVKTTDTRSQETKTRPSRRTLCVDYGTRRVGLAIGVGISPRAVPGVTNVGSDLEVARQVLVRARGEGIRDIVVGLPLERNGTETEMCEIVRGFASVLADVGAASRPTAGVFLWDERFSSAQAAAMLDPYGGGMSSKVEIDSLAASLILKHFFEEGGTNNAEKVKPSTGVVTAEVWRAAGRDGEEGEEDESXXXXXEDAYGEGSRRRFQEMREESARSAAAGEDSARRRAWRKRRRR 296          
BLAST of mRNA_H-paniculata_contig2335.6292.1 vs. uniprot
Match: A0A7S3X7E5_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3X7E5_EMIHU)

HSP 1 Score: 95.9 bits (237), Expect = 1.220e-19
Identity = 59/144 (40.97%), Postives = 82/144 (56.94%), Query Frame = 0
Query:  139 TMAVDYGLSRVGLAVSVGISPRVLHGVSNRGSDLEVVKQILVRA-RGEGIRKIVVGFPLMRDGEECEMCHIVRSFALLLADAGAVSNTPTTVYLWDERFSSAQAGAMLDRHGGGMSKKIEIDSLAASLILTHYFDAGGEGAEKV 281
            T+ VD+GL R GLAVS GI+P  +  + ++ ++L  V   +VRA R EG  ++V+G P    G E E     R F  LLA   A    P  VYLWDERFSSA+A +M    G G ++   ID +AA++IL  +F+     AE +
Sbjct:   63 TLGVDFGLRRTGLAVSAGIAPLPIGIIDDQSANLTAVAAQVVRAARSEGASQLVLGMPYNSSGGEGEQAVATRRFGELLAREAA----PRPVYLWDERFSSAEA-SMRANAGDGAARGQSIDDVAAAIILEEFFEGDFASAELI 201          
BLAST of mRNA_H-paniculata_contig2335.6292.1 vs. uniprot
Match: R1ED05_EMIHU (YqgFc domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ED05_EMIHU)

HSP 1 Score: 95.9 bits (237), Expect = 1.430e-19
Identity = 59/144 (40.97%), Postives = 82/144 (56.94%), Query Frame = 0
Query:  139 TMAVDYGLSRVGLAVSVGISPRVLHGVSNRGSDLEVVKQILVRA-RGEGIRKIVVGFPLMRDGEECEMCHIVRSFALLLADAGAVSNTPTTVYLWDERFSSAQAGAMLDRHGGGMSKKIEIDSLAASLILTHYFDAGGEGAEKV 281
            T+ VD+GL R GLAVS GI+P  +  + ++ ++L  V   +VRA R EG  ++V+G P    G E E     R F  LLA   A    P  VYLWDERFSSA+A +M    G G ++   ID +AA++IL  +F+     AE +
Sbjct:   27 TLGVDFGLRRTGLAVSAGIAPLPIGIIDDQSANLTAVAAQVVRAARSEGASQLVLGMPYNSSGGEGEQAVATRRFGELLAREAA----PRPVYLWDERFSSAEA-SMRANAGDGAARGQSIDDVAAAIILEEFFEGDFASAELI 165          
BLAST of mRNA_H-paniculata_contig2335.6292.1 vs. uniprot
Match: A0A0M9UCW6_9CHLR (Putative pre-16S rRNA nuclease n=2 Tax=Ardenticatena maritima TaxID=872965 RepID=A0A0M9UCW6_9CHLR)

HSP 1 Score: 92.8 bits (229), Expect = 2.830e-19
Identity = 56/142 (39.44%), Postives = 83/142 (58.45%), Query Frame = 0
Query:  142 VDYGLSRVGLAVSVGISPRVLHGVSNRGSDLEVVKQILVRARGEGIRKIVVGFPLMRDGEECEMCHIVRSFALLLADAGAVSNTPTTVYLWDERFSSAQAGAMLDRHGGGMSKKIE-IDSLAASLILTHYFDAGGEGAEKVM 282
            +DYG  RVG+A  VG++PR +  V   GS   ++ +++  AR E   KI+VG PL  DG E E     R+FA +LA     + T   VYLWDER++S  A   +   G     + E +D++AA+++L HYF+  G GAE+V+
Sbjct:    1 MDYGKRRVGVAAGVGMAPRPV-AVLPHGSLESLIARLVELARAEQAAKIIVGLPLNTDGSEGEQAAQCRAFAEVLA-----AQTDIPVYLWDERYTSKDAQQQMIAAGTTQKARREKLDAVAAAVMLEHYFEHQGVGAERVI 136          
BLAST of mRNA_H-paniculata_contig2335.6292.1 vs. uniprot
Match: A0A8J2T1I1_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1I1_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 4.960e-19
Identity = 59/141 (41.84%), Postives = 78/141 (55.32%), Query Frame = 0
Query:  138 PTMAVDYGLSRVGLAVSVGISPRVLHGVSNRGSDLEVVKQILVRARGEGIRKIVVGFPLMRDGEECEMCHIVRSFALLLADAGAVSNTPTTVYLWDERFSSAQAGAMLDRHGGGMSKKIEIDSLAASLILTHYFDAGGEGA 278
            PT+ VDYGL RVG+ V VG + R L  + +      VV ++L  AR E I  IVVG PL +DG E   C   R FA    DA A +   T + LWDERFSS +A A+L    G       +D++AA +IL  +F +  +GA
Sbjct:   77 PTLGVDYGLRRVGVCVGVGFASRPLEVIEHDEDIDAVVARLLQIARRERIASIVVGLPLEKDGAEGLQCAATRRFA----DALAAAAPATPLVLWDERFSSREAEALLAHRPGAA-----LDAVAACVILDDFFASADDGA 208          
BLAST of mRNA_H-paniculata_contig2335.6292.1 vs. uniprot
Match: A0A7S2ZDD4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZDD4_9RHOD)

HSP 1 Score: 93.2 bits (230), Expect = 1.270e-18
Identity = 63/148 (42.57%), Postives = 84/148 (56.76%), Query Frame = 0
Query:  139 TMAVDYGLSRVGLAVSVGISPRVLHGVSNRGSDLEVVKQILVRARGEGIRKIVVGFPLMRDGEECEMCHIVRSFALLLADAGAVSNTPTTVYLWDERFSSAQAGAMLDRHGGGMSKK-----IE--IDSLAASLILTHYFDAGGEGAE 279
            T+AVDYGL RVGLA+SVGI+PR L+ + NRG+  EV ++I   AR E + ++VVG PL   G+E E     R F   L     ++     +YLWDERFS+  A   L      MS K     +E  +DS AA  IL  +F+  G+ AE
Sbjct:   24 TLAVDYGLRRVGLALSVGIAPRRLNKIYNRGNLGEVARRISDVARREMVLQVVVGLPLNSKGDEGEQAAATRKFCEYLR----IALPEPPIYLWDERFSTQTARNRL------MSSKTYRNQVENFVDSEAAVAILEDFFENSGDDAE 161          
BLAST of mRNA_H-paniculata_contig2335.6292.1 vs. uniprot
Match: A0A7S3E813_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E813_9RHOD)

HSP 1 Score: 84.3 bits (207), Expect = 6.450e-16
Identity = 48/103 (46.60%), Postives = 64/103 (62.14%), Query Frame = 0
Query:  139 TMAVDYGLSRVGLAVSVGISPRVLHGVSNRGSDLEVVKQILVRARGEGIRKIVVGFPLMRDGEECEMCHIVRSFALLLADAGAVSNTPTTVYLWDERFSSAQA 241
            T+AVDYGL RVGLA+SVGI+PR L+ + NRG+  EV ++I   AR E + ++VVG PL   G+E E     R F   L     ++     +YLWDERFS+  A
Sbjct:   24 TLAVDYGLRRVGLALSVGIAPRRLNKIYNRGNLGEVARRISDVARREMVLQVVVGLPLNSKGDEGEQAAATRKFCEYLR----IALPEPPIYLWDERFSTQTA 122          
BLAST of mRNA_H-paniculata_contig2335.6292.1 vs. uniprot
Match: A0A7S2U9E1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U9E1_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 7.960e-15
Identity = 54/147 (36.73%), Postives = 76/147 (51.70%), Query Frame = 0
Query:  137 VPTMAVDYGLSRVGLAVSVGISPRVLHGVSNRGSDLEVVKQILVRARGEGIRKIVVGFPLMRDGEECEMCHIVRSFALLLADAGAVSNTP--TTVYLWDERFSSAQAGAMLDRHGGGMSKKIEIDSLAASLILTHYFDAGGEGAEKV 281
            V ++ VDYGL R GLA++ G SPR    VS+R S  EV   ++     E   ++++G PL ++G   E  +    FA  L  A      P    VY WDER++S  A A         +   ++D+ AA LIL HY+   GEGAE+V
Sbjct:  146 VKSVGVDYGLVRTGLALTNGYSPRPYMIVSDRNST-EVAADVVRLVASERASRVILGLPLHKNGTVAEQTNKTLDFATYLVCAIESRFGPDCVPVYFWDERYTSKAAAARAHSIDPRRNLFKDLDAEAACLILEHYYQVNGEGAERV 291          
BLAST of mRNA_H-paniculata_contig2335.6292.1 vs. uniprot
Match: A0A834ZU02_9MAGN (YqgFc domain-containing protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834ZU02_9MAGN)

HSP 1 Score: 81.6 bits (200), Expect = 3.340e-14
Identity = 57/155 (36.77%), Postives = 80/155 (51.61%), Query Frame = 0
Query:  139 TMAVDYGLSRVGLAVSVGISPRVLHGVSNRGSDLEVVKQILVRARGEGIRKIVVGFPLMRDGEECEMCHIVRSFALLLADAGAVSNTPTTVYLWDERFSSAQA-GAMLDRHGGGMSKKIEIDSLAASLILTHYFDAGGEGAEKVMASGQRTPELL 292
            ++ VD G+SR G+A+S G SPR L  +  RG  LE+  ++L  A  E   + +VG P  R+GEE    + VRS A  LA   A       VYL DE  +S +A   M+DR     ++K  ID+ AA ++L  Y+   G G E V+       E L
Sbjct:   82 SLGVDLGMSRTGVALSKGFSPRPLTVLDLRGQKLEL--RLLEIAEQEEADEFIVGLPKSRNGEETPQSNKVRSVAGRLAVRAAERGW--RVYLQDEHGTSTEALDLMIDRGLNNSARKGRIDAYAAMMVLVRYYSMSGHGTELVIPKQSELQEKL 232          
BLAST of mRNA_H-paniculata_contig2335.6292.1 vs. uniprot
Match: A0A7S3F3A2_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F3A2_9EUKA)

HSP 1 Score: 80.1 bits (196), Expect = 3.800e-14
Identity = 60/144 (41.67%), Postives = 77/144 (53.47%), Query Frame = 0
Query:  150 GLAVSVGISPRVLHGVSNRGSDLE---VVKQILVRARGEGIRKIVVGFPLMRDGEECEMCHIVRSFALLLADAGAVSNTPTTVYLWDERFSSAQAGAMLDRHGGGMSKKIEIDSLAASLILTHYFDAGGEGAEKVMASGQRTPE 290
            G+A+S G SP  L  VS  GS  +   V  QI   A GEG  +IV+G PL   G E E   + R FA  LA A   S  P  V+LWDERFSSA+A   ++  G G S    ID++AA++IL  +F      AE + A G+   E
Sbjct:    1 GVALSSGFSPIPLTVVSCNGSKEDFPQVASQICRIALGEGASQIVLGLPLNSSGGEGEQAVVTREFASSLACA---SQLP--VFLWDERFSSAEASMRMNS-GRGASAGQTIDAVAAAIILEEFFAGEWATAESICAPGRPAEE 138          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2335.6292.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRK7_ECTSI3.890e-6652.17YqgFc domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S3X7E5_EMIHU1.220e-1940.97Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
R1ED05_EMIHU1.430e-1940.97YqgFc domain-containing protein n=2 Tax=Emiliania ... [more]
A0A0M9UCW6_9CHLR2.830e-1939.44Putative pre-16S rRNA nuclease n=2 Tax=Ardenticate... [more]
A0A8J2T1I1_9STRA4.960e-1941.84Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2ZDD4_9RHOD1.270e-1842.57Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3E813_9RHOD6.450e-1646.60Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2U9E1_9STRA7.960e-1536.73Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A834ZU02_9MAGN3.340e-1436.77YqgFc domain-containing protein n=1 Tax=Tetracentr... [more]
A0A7S3F3A2_9EUKA3.800e-1441.67Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006641YqgF/RNase H-like domainSMARTSM00732rnase_8scoord: 137..241
e-value: 2.0E-10
score: 50.6
IPR005227Putative pre-16S rRNA nucleaseTIGRFAMTIGR00250TIGR00250coord: 141..272
e-value: 7.3E-13
score: 46.7
IPR005227Putative pre-16S rRNA nucleasePFAMPF03652RuvXcoord: 140..272
e-value: 1.9E-23
score: 83.3
IPR005227Putative pre-16S rRNA nucleasePANTHERPTHR33317FAMILY NOT NAMEDcoord: 125..284
IPR005227Putative pre-16S rRNA nucleaseHAMAPMF_00651Nuclease_YqgFcoord: 137..275
score: 15.739
IPR037027YqgF/RNase H-like domain superfamilyGENE3D3.30.420.140coord: 138..274
e-value: 5.9E-24
score: 86.6
NoneNo IPR availablePANTHERPTHR33317:SF1POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEINcoord: 125..284
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..35
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 16..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 28..35
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 36..348
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..28
score: 0.535
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 139..273

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2335contigH-paniculata_contig2335:1204..3257 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2335.6292.1mRNA_H-paniculata_contig2335.6292.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2335 179..3426 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2335.6292.1 ID=prot_H-paniculata_contig2335.6292.1|Name=mRNA_H-paniculata_contig2335.6292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=349bp
MGPPRARARRRLHRQVCISSFLLLAGLSRSPPLRSEAFVARNLSLKPLWT
HCLCRSPGASPVTSPGRPARRRCATTVDGELERPEETWTQDHVDRNDGEY
LHEEDTNVEDDCEVHPSAAWLDDPSLNLKKAPRAPLVPTMAVDYGLSRVG
LAVSVGISPRVLHGVSNRGSDLEVVKQILVRARGEGIRKIVVGFPLMRDG
EECEMCHIVRSFALLLADAGAVSNTPTTVYLWDERFSSAQAGAMLDRHGG
GMSKKIEIDSLAASLILTHYFDAGGEGAEKVMASGQRTPELLAAAGVTGG
SGEQGQQELFGEDLKRKRDEERAESTRLIASGAYVPFMKPPRSKRKRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006641YqgF/RNaseH-like_dom
IPR005227YqgF
IPR037027YqgF/RNaseH-like_dom_sf
IPR012337RNaseH-like_sf