prot_H-paniculata_contig2305.6187.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2305.6187.1
Unique Nameprot_H-paniculata_contig2305.6187.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length279
Homology
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BLAST of mRNA_H-paniculata_contig2305.6187.1 vs. uniprot
Match: D8LG11_ECTSI (SKA2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG11_ECTSI)

HSP 1 Score: 234 bits (598), Expect = 2.350e-73
Identity = 135/263 (51.33%), Postives = 179/263 (68.06%), Query Frame = 0 
Query:    1 METVDLLKQLEINYKLISNDLEFASHKLEDYLGAASSRADSSIPDLHALQCRLQSLQSIIPGLVKDSSEVVRQRREEESVLNASSLESHRIMVGLYARLGVIPDPDWVTVAQEVESLAPVPRPSAATETELQGFGEAGQERSIEQEGLTGRSADPAHAG--KSGASRKEDDRRKHASPGVILEEDFMAVAANTRGRCKLQDVRKVYAKVLEDYQEKASNMNSRSSNKPRPISKKMLDGAGLKVFGLTGDNILNTLRALGLVTV 261
            +E+ D+LKQLEIN+ L  NDLEFASH+L+  +  A+ RA+ SIPDLH L  R++++++ +PGL KD++EV  +R+E E  LN + +E++ +MVGLYARLGV PDP+WV  A +VES  P PR S A        G+ G+      E    +++   H+G  +  ASR E+ R    S  VI EEDF+A+ ANTRGR KLQDVRKVYAKV ED++ K S    R   KP PI+K+ LD AGLKVFGLTGD +LN LRA+GL+TV
Sbjct:    4 LESTDILKQLEINFDLALNDLEFASHQLDSRMKDAT-RANVSIPDLHTLHHRIRAIKTELPGLAKDATEVEAERKETEIALNTTVIENYNVMVGLYARLGVAPDPEWVATAADVESFLPAPRDSGAVSDSFVSGGDEGEGVGSAVEEDATQASTVLHSGNPEMSASRVEE-RVVEQSFSVIFEEDFLAIHANTRGRSKLQDVRKVYAKVREDFEAKKSR--GRPGCKPAPITKRELDAAGLKVFGLTGDCVLNALRAMGLITV 262
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2305.6187.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LG11_ECTSI2.350e-7351.33SKA2 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 7..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2305contigH-paniculata_contig2305:435..12332 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2305.6187.1mRNA_H-paniculata_contig2305.6187.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2305 133..12390 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2305.6187.1 ID=prot_H-paniculata_contig2305.6187.1|Name=mRNA_H-paniculata_contig2305.6187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=279bp
METVDLLKQLEINYKLISNDLEFASHKLEDYLGAASSRADSSIPDLHALQ
CRLQSLQSIIPGLVKDSSEVVRQRREEESVLNASSLESHRIMVGLYARLG
VIPDPDWVTVAQEVESLAPVPRPSAATETELQGFGEAGQERSIEQEGLTG
RSADPAHAGKSGASRKEDDRRKHASPGVILEEDFMAVAANTRGRCKLQDV
RKVYAKVLEDYQEKASNMNSRSSNKPRPISKKMLDGAGLKVFGLTGDNIL
NTLRALGLVTVRSIWAGSGMESMMDVTQ*
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