prot_H-paniculata_contig2186.5771.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig2186.5771.1
Unique Name	prot_H-paniculata_contig2186.5771.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	825

Homology

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BLAST of mRNA_H-paniculata_contig2186.5771.1 vs. uniprot
Match: A0A6H5JTB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB3_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 3.560e-33
Identity = 264/686 (38.48%), Postives = 311/686 (45.34%), Query Frame = 0

Query:    1 MGAEISLDRSELSCLSAVGIADLATALDPDMADFRQTFIDFGVDGDMLLRHTRDQLTDALHRMGV-DRDQVDFLLEELEKVRQDVDDAPRLEREYLRQFLGQEGNG------------GVSMDSDERVNELDCSGSYLSGELPVALFELSRLLYLHAGSNEFTA----------------------------------------------------GNXXXXXXXXXXLTSLRLGHNKLSGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---KLTARIFSS-QTSLVYLDLSRNYFEGELPLAWFLPFWAKDPESNDGLVDRGNDSSDTK--QGKPSR---------------LSYFNVSRNQLTGSIPAGIRQLTALDTLDIXXXXXXXXXXXXXGNCISLRVLCLSRCGLSGRIYGIDLEKEGDNRLGEDSGGVGRLTKLETLRLDGNILEGSVPAELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLSSLRVLRLDGNPSLQGPIPLVLASRPGCQVVADKHILEDTEAAMLGARLGEWMLVPRKA 600
            MG  +SL+  EL  LS V +ADLA        + RQ  IDFG+DG ML     DQL DAL R GV D+  + +LLEE+E +R+   D  +L+RE LR  L +  +G            GVS+DSD+R+  L+ +  +LSGELP ALFE+S L YLHA SN F A                                                    G           L SL+L HN L+GR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                           XXXXXXXXX                           XXXXXXXXXXXXXXXXXXXX       K+   I S+  +SLVYL+L  N FEG+LP++           S  G V RG+ S      QG+ SR               LSY N+  N+ TG +P  I  LT+L     XXXXXXXXXXXXX                           EGD     D GG+GRL+ LE LRLDGN   G VPA L                                                  L+ LR LRL+ NPSL+GPIP  LAS   C V AD+ +LEDTEAAMLG++L EW L+PRKA
Sbjct:    1 MGVAMSLE--ELGALSVVELADLAPP------EHRQASIDFGIDGHMLTSLPLDQLQDALARAGVEDKQHLVYLLEEIENIRRPKIDPSKLDRENLRAILERSDSGDHEELSGRSEWSGVSVDSDDRIIALNVTNRHLSGELPAALFEISNLEYLHATSNLFAAKGAKLLAIGLSFESQSLHHPPTFCLRHIPCLLFSCPFLGGIVWISLYTILPIGAIPDTIGDLKRLVSLKLDHNSLTGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGANKARRWISSPELASLHFLVELRLRENRLAGKISPMLVNMQSXXXXXXXXXALQGHIPESLGEMTNLRELWLGRRENQXXXXXXXXXXXXXXXXXXXXSRNKALWKIHPHILSTLSSSLVYLNLGHNAFEGDLPVS------PLSSHSAGGRVRRGSRSGSQSDGQGRNSRRKRSESAAAVVSASPLSYLNLCHNKFTGHVPEEIGSLTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XXXEGD-----DGGGLGRLSSLEILRLDGNTFHGIVPAALGNLARLEVLHLQLDRLWALAVRDNNLSGRVPESLGC--------------LTGLRSLRLEENPSLRGPIPDQLASGVNCNVRADQPVLEDTEAAMLGSKLDEWFLMPRKA 646

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BLAST of mRNA_H-paniculata_contig2186.5771.1 vs. uniprot
Match: D7FPI3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI3_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 2.350e-20
Identity = 151/287 (52.61%), Postives = 173/287 (60.28%), Query Frame = 0

Query:  331 TSLVYLDLSRNYFEGELPLAWFLPFWAKDPESNDGLVDRGNDSSDTK--QGKPSR---------------LSYFNVSRNQLTGSIPAGIRQLTALDTLDIXXXXXXXXXXXXXGNCISLRVLCLSRCGLSGRIYGIDLEKEGDNRLGEDSGGVGRLTKLETLRLDGNILEGSVPAELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLSSLRVLRLDGNPSLQGPIPLVLASRPGCQVVADKHILEDTEAAMLGARLGEWMLVPRKA 600
            +SLVYL+L  N FEG+LP++         P S  G V RG+ S      QG+ SR               LSY N+  N+ TG +   I  LT+      XXXXXXXXXXXXX                SG + G            +D GG+GRL+ LETLRLDGN   G VPA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        RL+ NPSL+GPIP  LAS   C V AD+ +L+DTEA MLG+RL EW L+PRKA
Sbjct:  253 SSLVYLNLGHNAFEGDLPVS------PLSPHSAGGRVRRGSTSGSPSEGQGRSSRRRRSESAAGVVSASPLSYLNLCHNKFTGRVSEEIGSLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGILEG------------DDGGGLGRLSSLETLRLDGNTFHGIVPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLEENPSLRGPIPDQLASGVNCNVRADQPVLDDTEATMLGSRLDEWFLMPRKA 521

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig2186.5771.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig2186.5771.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JTB3_9PHAE	3.560e-33	38.48	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FPI3_ECTSI	2.350e-20	52.61	Hypothetical leucine rich repeat protein n=1 Tax=E...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 825..825
None	No IPR available	PRINTS	PR00019	LEURICHRPT	coord: 308..321 score: 55.7 coord: 405..418 score: 48.34
None	No IPR available	PANTHER	PTHR46662	FAMILY NOT NAMED	coord: 466..561 coord: 107..349 coord: 206..446
None	No IPR available	PANTHER	PTHR46662:SF10		coord: 466..561 coord: 206..446
None	No IPR available	PANTHER	PTHR46662:SF10		coord: 107..349
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 370..564
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 117..443
IPR003591	Leucine-rich repeat, typical subtype	SMART	SM00369	LRR_typ_2	coord: 469..492 e-value: 370.0 score: 0.4 coord: 185..208 e-value: 160.0 score: 3.4 coord: 493..517 e-value: 92.0 score: 5.4 coord: 209..233 e-value: 21.0 score: 10.6 coord: 305..329 e-value: 8.1 score: 14.0 coord: 161..184 e-value: 61.0 score: 6.8 coord: 281..304 e-value: 84.0 score: 5.7 coord: 405..428 e-value: 120.0 score: 4.3
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 188..449 e-value: 1.8E-71 score: 243.2 coord: 455..572 e-value: 8.2E-27 score: 95.6
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 95..187 e-value: 1.3E-16 score: 62.5
IPR001611	Leucine-rich repeat	PFAM	PF13855	LRR_8	coord: 283..342 e-value: 4.7E-9 score: 35.9 coord: 163..222 e-value: 7.3E-9 score: 35.3

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig2186	contig	H-paniculata_contig2186:953..9992 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig2186.5771.1	mRNA_H-paniculata_contig2186.5771.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig2186 953..9992 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig2186.5771.1 ID=prot_H-paniculata_contig2186.5771.1|Name=mRNA_H-paniculata_contig2186.5771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=825bp
MGAEISLDRSELSCLSAVGIADLATALDPDMADFRQTFIDFGVDGDMLLR
HTRDQLTDALHRMGVDRDQVDFLLEELEKVRQDVDDAPRLEREYLRQFLG
QEGNGGVSMDSDERVNELDCSGSYLSGELPVALFELSRLLYLHAGSNEFT
AGNIPEAIGNLVRLTSLRLGHNKLSGRLPGSLTRLAGLTSLDLAWNQLTG
TVPMKFGSMTALRQLSLSHNKFNGSLPKELGYLHLLTELRLRENNLTGKI
PPLLGNMHSLTALDLTSNSLQGHIPESLGEITTLRELWLGGNKFVGLLPD
TLSKLQALESLDLSSNKLTGKLTARIFSSQTSLVYLDLSRNYFEGELPLA
WFLPFWAKDPESNDGLVDRGNDSSDTKQGKPSRLSYFNVSRNQLTGSIPA
GIRQLTALDTLDISYNKLEGIVPIDIGNCISLRVLCLSRCGLSGRIYGID
LEKEGDNRLGEDSGGVGRLTKLETLRLDGNILEGSVPAELGKLSRLQVLQ
LQGNCFSGCLPSTIGNLGRLWRLVVRDNQLSGRVPPSLEHLSSLRVLRLD
GNPSLQGPIPLVLASRPGCQVVADKHILEDTEAAMLGARLGEWMLVPRKA
FLKLLAFEGHSSVRPSLLRYACTVAPYDCHVFADARGKKLVVRRSEIAFF
SHCWDLLRNQCPPKLSLLEGPFLETPDYPKLAHMKACLQDAPPSVRYVWL
DMLCVPLADAKTRRAAGRSVPFFVQNSSRFYIIAPNNAGLERYKTRAWCR
LEALCAACPHHPNEVESAFSPKSRGSDGREGFVYDAVECFSSVWDQGTRV
ETNLGGGEGLAKAGFLIDPSKGNVS

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003591	Leu-rich_rpt_typical-subtyp
IPR032675	LRR_dom_sf
IPR001611	Leu-rich_rpt