prot_H-paniculata_contig2128.5582.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2128.5582.1
Unique Nameprot_H-paniculata_contig2128.5582.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length419
Homology
BLAST of mRNA_H-paniculata_contig2128.5582.1 vs. uniprot
Match: A0A6H5JB55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB55_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 1.270e-68
Identity = 161/451 (35.70%), Postives = 234/451 (51.88%), Query Frame = 0
Query:    8 LIALAAINAVHALCGVPAMSTGTITNGPAISGCYRKSAYSGLYETPLYTVGGRDIVASGTKAIVASDEYSSNGDPTWVIGSVVSLPAYSWSDGYGAGVDIISALCVSNPPFWQATDPDPTDATAWKCDTNGDGVFTLRESGDFNKMICGCSASGEVTPPPVPTP-------TNAPVPGNVRRTQAPVF------------------------AGAPTPVGSVTQSPMYMDGSMAEEALACNLTLSSETLKDVSGCYVGQPSSNTRGRWVEPNTYASIYWKESGTEAGNGIWAIHASGTG----IRCISYHNVDDPSDIDAALWRCNEDGGETYSADAVGDDFRGLLCTSTCQLNDGSQGSDSAESGSGSSXXSRK----GIVAGVSVVASMMVVGAVIF-ALVLRRKNKKASSEGTGTAEEGGVASGEAPVAAALPEFDPWGSRPPPKTYQ 418
            L+AL +  A  ALC   A++  T       SGCY++S Y+GLYET ++T+ GRD+   GTKAI+A  +     DP WVIG+V +LP  +WSDGY +G+++++ +C     FW+    DP     W CDT+GDGV ++ ESGD   + CGC+        P P         T  P  G +  T                              GA +    +T +P+ + G++A  A ACNLTL+S  ++D+SGCY    SSN RGRWV+ +  A I W+E+      G W +  +G G    I+CI   +V+DP++I    W C+ +G  +Y+  A+  DF  L CT +C++      + S ES     XX        IV G SVV+ + V   VI  AL+L+R+ + A + GTG AE    A   AP  A +P F+PWG+RP P+ Y+
Sbjct:   12 LVALLSPMATGALCTQSALTIETTAF--TFSGCYQESPYAGLYETKVWTIDGRDVAEFGTKAILADLQNGPLVDPVWVIGTVTALPQNTWSDGYSSGLEVVNLVCTGTSAFWETE--DPAQEIQWACDTDGDGVTSVPESGDL-AVTCGCAGMPTTISTPAPXXXXXXXXXTPEPTIGVISHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGANS--NQMTPAPI-VGGTVAPTAPACNLTLASNDMQDMSGCYARGTSSNARGRWVKLDETAIIEWQEAQGSNKQGNWVVLVAGFGLPDEIKCIGSDDVEDPTEIPVTSWYCDLEGEGSYTP-AISFDFEALTCTGSCEI------ATSVESXXXXXXXXXXXXXMAIVVG-SVVSGVGVAAIVIIGALLLKRRKRGAKTNGTGPAENADPADPSAP--APIPVFEPWGTRPAPRYYK 444          
BLAST of mRNA_H-paniculata_contig2128.5582.1 vs. uniprot
Match: D7FGX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX6_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 3.760e-33
Identity = 68/164 (41.46%), Postives = 97/164 (59.15%), Query Frame = 0
Query:    8 LIALAAINAVHALCGVPAMSTGTITNGPAISGCYRKSAYSGLYETPLYTVGGRDIVASGTKAIVASDEYSSNGDPTWVIGSVVSLPAYSWSDGYGAGVDIISALCVSNPPFWQATDPDPTDATAWKCDTNGDGVFTLRESGDFNKMICGCSASGEVTPPPVPTP 171
            L+AL +  A  ALC   A++  T       SGCY++S Y+GLYET ++T+ GRD+   GTKAI+A  +     DP WVIG+V +LP  +WSDGY +G+++++ +C     FW+    DP     W CDT+GDGV ++ ESGD   + CGC+        P P P
Sbjct:   12 LVALLSPMAAGALCTQSALTIETTAF--TFSGCYQESPYAGLYETKVWTIEGRDVAEFGTKAILADLQNGPLVDPVWVIGTVTALPQNTWSDGYNSGLEVVNLVCTGTSTFWETE--DPAQEIQWTCDTDGDGVTSVPESGDL-AVTCGCAGMPTTISTPAPMP 170          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2128.5582.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JB55_9PHAE1.270e-6835.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGX6_ECTSI3.760e-3341.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 349..371
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 372..418
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..348
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.921
NoneNo IPR availableTMHMMTMhelixcoord: 349..371

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2128contigH-paniculata_contig2128:13297..20356 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2128.5582.1mRNA_H-paniculata_contig2128.5582.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2128 12789..21459 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2128.5582.1 ID=prot_H-paniculata_contig2128.5582.1|Name=mRNA_H-paniculata_contig2128.5582.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=419bp
MKMLGVALIALAAINAVHALCGVPAMSTGTITNGPAISGCYRKSAYSGLY
ETPLYTVGGRDIVASGTKAIVASDEYSSNGDPTWVIGSVVSLPAYSWSDG
YGAGVDIISALCVSNPPFWQATDPDPTDATAWKCDTNGDGVFTLRESGDF
NKMICGCSASGEVTPPPVPTPTNAPVPGNVRRTQAPVFAGAPTPVGSVTQ
SPMYMDGSMAEEALACNLTLSSETLKDVSGCYVGQPSSNTRGRWVEPNTY
ASIYWKESGTEAGNGIWAIHASGTGIRCISYHNVDDPSDIDAALWRCNED
GGETYSADAVGDDFRGLLCTSTCQLNDGSQGSDSAESGSGSSSSSRKGIV
AGVSVVASMMVVGAVIFALVLRRKNKKASSEGTGTAEEGGVASGEAPVAA
ALPEFDPWGSRPPPKTYQ*
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