prot_H-paniculata_contig21162.5541.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig21162.5541.1
Unique Nameprot_H-paniculata_contig21162.5541.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length164
Homology
BLAST of mRNA_H-paniculata_contig21162.5541.1 vs. uniprot
Match: A0A6H5JA09_9PHAE (Helicase C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA09_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 4.170e-51
Identity = 100/169 (59.17%), Postives = 121/169 (71.60%), Query Frame = 0
Query:    1 EQIAFAALSFNEKARCIMAERNCDGGDGATDGVGM-----RGSEAGRSDWDRRLTRSNNFLQLCRDDLCGKMKTLKVLLKRFRKPVQKVLLFSYSTAMLDILQALMMSQGYTWLRLDGATAMEDRARIIREYNNGDALDNFVFLISTRAGGTGLNLQTANKVILYDVNW 164
            + IAFA ++F+E+AR IMA      G G   G  +      G   G  +WDRRL R  NFLQLCRDD CGKM+TLKVLL+RF+   QKVLLFSYSTAMLDILQAL  SQGYT+L+LDG TA + R ++I  +   +A+ + VFL+ST AGGTGLNLQ A+KVILYDVNW
Sbjct:  111 DDIAFANVAFDEEARAIMAGLPGQHGGGVASGSSIGAGRGAGGRGGGDEWDRRLARPENFLQLCRDDTCGKMRTLKVLLERFKNK-QKVLLFSYSTAMLDILQALCSSQGYTFLKLDGNTAKDQRQKMIDRFTKQNAIQSNVFLVSTTAGGTGLNLQAASKVILYDVNW 278          
BLAST of mRNA_H-paniculata_contig21162.5541.1 vs. uniprot
Match: D7FIQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ3_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 1.670e-49
Identity = 100/169 (59.17%), Postives = 120/169 (71.01%), Query Frame = 0
Query:    1 EQIAFAALSFNEKARCIMAERNCDGGDGATDGVGM-----RGSEAGRSDWDRRLTRSNNFLQLCRDDLCGKMKTLKVLLKRFRKPVQKVLLFSYSTAMLDILQALMMSQGYTWLRLDGATAMEDRARIIREYNNGDALDNFVFLISTRAGGTGLNLQTANKVILYDVNW 164
            + IAFA ++F+E+AR IMA+     G GA  G  +             +WDRRL R  NFLQLCRDD CGKM+TLKVLL+RF+    KVLLFSYSTAMLDILQAL  SQGYT+L+LDG TA + R ++I  +   +A+ N VFLIST AGGTGLNLQ A+KVILYDVNW
Sbjct:  675 DDIAFANVAFSEEARVIMADLPGQHGGGAVSGSSIGXXXXXXXXXXXXEWDRRLARPENFLQLCRDDTCGKMRTLKVLLERFKNK-HKVLLFSYSTAMLDILQALCSSQGYTFLKLDGNTAKDQRQKMIDRFTKQNAIQNNVFLISTTAGGTGLNLQAASKVILYDVNW 842          
BLAST of mRNA_H-paniculata_contig21162.5541.1 vs. uniprot
Match: D7FX84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX84_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 4.640e-29
Identity = 72/164 (43.90%), Postives = 101/164 (61.59%), Query Frame = 0
Query:    1 EQIAFAALSFNEKARCIMAERNCDGGDGATDGVGMRGSEAGRSDWDRRLTRSNNFLQLCRDDLCGKMKTLKVLLKRFRKPVQKVLLFSYSTAMLDILQALMMSQGYTWLRLDGATAMEDRARIIREYNNGDALDNFVFLISTRAGGTGLNLQTANKVILYDVNW 164
            +Q  FA ++F ++AR IM      GG                      L RS  FL + +  +CGKMK+L+ LL +F +   KVL+FS+STAMLD+L++ + ++GY + RLDG T+ ++R   I E+N+ D    FVFLISTRAGG GLNL TA++V+LYDVNW
Sbjct:  839 QQRQFAEVAFTDRAREIM------GG----------------------LERSQKFLDVSKVGVCGKMKSLETLLAKFHETRDKVLVFSWSTAMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNS-DRAGVFVFLISTRAGGQGLNLHTASRVVLYDVNW 973          
BLAST of mRNA_H-paniculata_contig21162.5541.1 vs. uniprot
Match: A0A210QI17_MIZYE (DNA repair and recombination protein RAD26-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210QI17_MIZYE)

HSP 1 Score: 112 bits (280), Expect = 1.070e-25
Identity = 60/115 (52.17%), Postives = 78/115 (67.83%), Query Frame = 0
Query:   50 TRSNNFLQLCRDDLCGKMKTLKVLLKRFRKPVQKVLLFSYSTAMLDILQALMMSQGYTWLRLDGATAMEDRARIIREYNNGDALDNFVFLISTRAGGTGLNLQTANKVILYDVNW 164
            TR   F  L     CGKMK LK LL  F K   KVLLFSYST +LDIL+  MM+ GY + RLDG+T+ + R  ++RE+N   ++  F+FLIST+AGG GLNL  AN+V+++D NW
Sbjct:  624 TREAAFRTLSDPKYCGKMKILKGLLSVFNKDHSKVLLFSYSTRVLDILEQYMMTTGYEYRRLDGSTSAKKRMDLVREFNKDPSI--FIFLISTKAGGLGLNLTGANRVVIFDPNW 736          
BLAST of mRNA_H-paniculata_contig21162.5541.1 vs. uniprot
Match: UPI001458743C (DNA excision repair protein ERCC-6-like 2 isoform X1 n=2 Tax=Pecten maximus TaxID=6579 RepID=UPI001458743C)

HSP 1 Score: 112 bits (280), Expect = 1.070e-25
Identity = 59/115 (51.30%), Postives = 79/115 (68.70%), Query Frame = 0
Query:   50 TRSNNFLQLCRDDLCGKMKTLKVLLKRFRKPVQKVLLFSYSTAMLDILQALMMSQGYTWLRLDGATAMEDRARIIREYNNGDALDNFVFLISTRAGGTGLNLQTANKVILYDVNW 164
            TR   F  L     CGKMK LK LL  F +   KVLLFSYST +LDIL+  MM+ GY + RLDG+T+++ R  ++RE+N   ++  F+FLIST+AGG GLNL  AN+V+++D NW
Sbjct:  648 TREAAFRTLSDPKYCGKMKILKGLLSVFSRDHSKVLLFSYSTKVLDILEQYMMTTGYEYRRLDGSTSVKKRMELVREFNKDPSI--FIFLISTKAGGLGLNLTGANRVVIFDPNW 760          
BLAST of mRNA_H-paniculata_contig21162.5541.1 vs. uniprot
Match: B5YNH0_THAPS (ATP-dependent helicase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNH0_THAPS)

HSP 1 Score: 108 bits (269), Expect = 3.040e-24
Identity = 56/103 (54.37%), Postives = 75/103 (72.82%), Query Frame = 0
Query:   62 DLCGKMKTLKVLLKRFRKPVQKVLLFSYSTAMLDILQALMMSQGYTWLRLDGATAMEDRARIIREYNNGDALDNFVFLISTRAGGTGLNLQTANKVILYDVNW 164
            +L GKMKTL   L++++K   +VL+FSYSTA LD++Q  + +QG+T LRLDG TA   R  ++ ++    A+  FVFLISTRAGG GLNL  ANKVI++DVNW
Sbjct:  408 NLSGKMKTLDYCLRKYQKKRHRVLVFSYSTATLDLIQQHVKTQGWTHLRLDGQTATSTRQALVDQFQRDQAI--FVFLISTRAGGLGLNLTAANKVIIFDVNW 508          
BLAST of mRNA_H-paniculata_contig21162.5541.1 vs. uniprot
Match: A0A7S3WK24_EMIHU (Hypothetical protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WK24_EMIHU)

HSP 1 Score: 107 bits (266), Expect = 6.270e-24
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 0
Query:   50 TRSNNFLQLCRDDLCGKMKTLKVLLKRFRKPVQKVLLFSYSTAMLDILQALMMSQGYTWLRLDGATAMEDRARIIREYNNGDALDNFVFLISTRAGGTGLNLQTANKVILYDVNW 164
            TR N FL     D CGKM+ L+ LL  +R    KVLLFSYST MLDIL+ ++   GY + RLDG T+ + R +++ E+N  +++  FVFL+ST+AGG GLNL  A  V+++D NW
Sbjct:  348 TRDNTFLSRGSVDKCGKMRALRGLLSTWRLRSAKVLLFSYSTVMLDILEDMVARAGYNYRRLDGKTSAKKRTQLVDEFNTQESI--FVFLLSTKAGGLGLNLVAATVVVIFDPNW 460          
BLAST of mRNA_H-paniculata_contig21162.5541.1 vs. uniprot
Match: A0A6J8DTE3_MYTCO (ERCC6L2 n=2 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8DTE3_MYTCO)

HSP 1 Score: 106 bits (264), Expect = 1.520e-23
Identity = 56/111 (50.45%), Postives = 75/111 (67.57%), Query Frame = 0
Query:   54 NFLQLCRDDLCGKMKTLKVLLKRFRKPVQKVLLFSYSTAMLDILQALMMSQGYTWLRLDGATAMEDRARIIREYNNGDALDNFVFLISTRAGGTGLNLQTANKVILYDVNW 164
            +F  L     CGKMK LK LL  F K   KVL+FSYST +LDI +  +M+  Y + RLDG+T+M+ R  ++RE+N    +  F+FLISTRAGG GLNL  AN+V+++D NW
Sbjct:  750 SFRTLSDPKYCGKMKVLKGLLSVFYKDHSKVLVFSYSTRVLDIFEQYLMTTEYEYRRLDGSTSMKKRMALVREFNRDPNI--FIFLISTRAGGLGLNLTGANRVVIFDPNW 858          
BLAST of mRNA_H-paniculata_contig21162.5541.1 vs. uniprot
Match: A0A8B6EE27_MYTGA (DNA excision repair protein ERCC-6-like 2 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EE27_MYTGA)

HSP 1 Score: 104 bits (260), Expect = 5.100e-23
Identity = 55/111 (49.55%), Postives = 75/111 (67.57%), Query Frame = 0
Query:   54 NFLQLCRDDLCGKMKTLKVLLKRFRKPVQKVLLFSYSTAMLDILQALMMSQGYTWLRLDGATAMEDRARIIREYNNGDALDNFVFLISTRAGGTGLNLQTANKVILYDVNW 164
            +F  L     CGKMK LK LL  F K   KVL+FSYST +LDI +  +M+  Y + RLDG+T+++ R  ++RE+N    +  F+FLISTRAGG GLNL  AN+V+++D NW
Sbjct:  641 SFRTLSDPKYCGKMKVLKGLLSVFYKDHSKVLVFSYSTRVLDIFEQYLMTTEYEYRRLDGSTSIKKRMALVREFNRDPNI--FIFLISTRAGGLGLNLTGANRVVIFDPNW 749          
BLAST of mRNA_H-paniculata_contig21162.5541.1 vs. uniprot
Match: UPI000C7638E7 (DNA excision repair protein ERCC-6-like 2 isoform X1 n=4 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C7638E7)

HSP 1 Score: 104 bits (259), Expect = 6.590e-23
Identity = 56/114 (49.12%), Postives = 73/114 (64.04%), Query Frame = 0
Query:   51 RSNNFLQLCRDDLCGKMKTLKVLLKRFRKPVQKVLLFSYSTAMLDILQALMMSQGYTWLRLDGATAMEDRARIIREYNNGDALDNFVFLISTRAGGTGLNLQTANKVILYDVNW 164
            R+  FL++    L GKM  L  LL        KVLLFS+ST +LDIL   + S+GYT+ RLDG T ME R R++ E+N    +  FVFL+ST+AGG GLN+  AN VI++D NW
Sbjct:   99 RAGKFLEMADTKLSGKMVVLSGLLHVMESQRGKVLLFSHSTRVLDILSMFLRSKGYTYTRLDGNTKMEQRQRLVNEFNTDPGI--FVFLVSTKAGGVGLNITGANNVIVFDPNW 210          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21162.5541.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JA09_9PHAE4.170e-5159.17Helicase C-terminal domain-containing protein n=1 ... [more]
D7FIQ3_ECTSI1.670e-4959.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FX84_ECTSI4.640e-2943.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A210QI17_MIZYE1.070e-2552.17DNA repair and recombination protein RAD26-like n=... [more]
UPI001458743C1.070e-2551.30DNA excision repair protein ERCC-6-like 2 isoform ... [more]
B5YNH0_THAPS3.040e-2454.37ATP-dependent helicase (Fragment) n=1 Tax=Thalassi... [more]
A0A7S3WK24_EMIHU6.270e-2448.70Hypothetical protein (Fragment) n=2 Tax=Emiliania ... [more]
A0A6J8DTE3_MYTCO1.520e-2350.45ERCC6L2 n=2 Tax=Mytilus coruscus TaxID=42192 RepID... [more]
A0A8B6EE27_MYTGA5.100e-2349.55DNA excision repair protein ERCC-6-like 2 n=1 Tax=... [more]
UPI000C7638E76.590e-2349.12DNA excision repair protein ERCC-6-like 2 isoform ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 95..163
e-value: 0.0073
score: 24.4
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 66..164
e-value: 8.9E-12
score: 45.3
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 69..164
score: 11.082
NoneNo IPR availableGENE3D3.40.50.300coord: 39..164
e-value: 4.8E-35
score: 123.0
NoneNo IPR availablePANTHERPTHR45629:SF1DNA EXCISION REPAIR PROTEIN ERCC-6-LIKE 2coord: 45..164
NoneNo IPR availablePANTHERPTHR45629FAMILY NOT NAMEDcoord: 45..164
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..83
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 103..164
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 84..102
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 61..164

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21162contigH-paniculata_contig21162:770..4321 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21162.5541.1mRNA_H-paniculata_contig21162.5541.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig21162 770..4321 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig21162.5541.1 ID=prot_H-paniculata_contig21162.5541.1|Name=mRNA_H-paniculata_contig21162.5541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
EQIAFAALSFNEKARCIMAERNCDGGDGATDGVGMRGSEAGRSDWDRRLT
RSNNFLQLCRDDLCGKMKTLKVLLKRFRKPVQKVLLFSYSTAMLDILQAL
MMSQGYTWLRLDGATAMEDRARIIREYNNGDALDNFVFLISTRAGGTGLN
LQTANKVILYDVNW
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase