prot_H-paniculata_contig20669.5366.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig20669.5366.1
Unique Nameprot_H-paniculata_contig20669.5366.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length99
Homology
BLAST of mRNA_H-paniculata_contig20669.5366.1 vs. uniprot
Match: D7FTY7_ECTSI (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTY7_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.950e-38
Identity = 66/82 (80.49%), Postives = 78/82 (95.12%), Query Frame = 0
Query:    1 MPLAIATSPSAITMPVDVVLGIAMPLHAHIGMNYVISDYVPRASRGPARGAMLAATVIATLGLLKLNVAGPGLTETLKATWK 82
            +P A+ATSPSA+TMP+D+VLGIAMPLHAHIGMNYVISDYVP+++RG ARGAMLAA+V+ATLGLLKLN+ G GLTETLKATW+
Sbjct:   63 VPAAVATSPSALTMPLDIVLGIAMPLHAHIGMNYVISDYVPKSARGGARGAMLAASVLATLGLLKLNLTGAGLTETLKATWR 144          
BLAST of mRNA_H-paniculata_contig20669.5366.1 vs. uniprot
Match: W7TCL8_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCL8_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.250e-26
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 0
Query:    2 PLAIATSPSAITMPVDVVLGIAMPLHAHIGMNYVISDYVPRASRGPARGAMLAATVIATLGLLKLNVAGPGLTETLKATWK 82
            PLA+  SPS +T P+D+ LG+A P+H HIG+NY+ISDYVPRASR  AR  +L AT +  LGLLKLN++GPGLTET K+ W+
Sbjct:   78 PLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWR 158          
BLAST of mRNA_H-paniculata_contig20669.5366.1 vs. uniprot
Match: A0A7S3PKA9_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PKA9_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.290e-23
Identity = 48/82 (58.54%), Postives = 62/82 (75.61%), Query Frame = 0
Query:    2 PLAIATSPSAITMPVDVVLGIAMPLHAHIGMNYVISDYVPRASRGPARGAMLAATVIATLGLLKLNVAGPGLTETLKATWKK 83
            PLAI   PS ++MPVDV L I  PLHAH+GMN + +DYVP +  GPAR A+LA +V++T+GLLKL V+  G+T TLKA WK+
Sbjct:   64 PLAIVAHPSPLSMPVDVALAIVFPLHAHMGMNIIFTDYVPGSPTGPARMALLAVSVLSTIGLLKLAVSEDGITGTLKAVWKE 145          
BLAST of mRNA_H-paniculata_contig20669.5366.1 vs. uniprot
Match: A0A835YQL9_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQL9_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.110e-22
Identity = 43/76 (56.58%), Postives = 59/76 (77.63%), Query Frame = 0
Query:    8 SPSAITMPVDVVLGIAMPLHAHIGMNYVISDYVPRASRGPARGAMLAATVIATLGLLKLNVAGPGLTETLKATWKK 83
            +P+ +  PV+++L +A PLHAH+ MNYVISDYVPR ++ PAR AML  T +A+LGL+KL++ GPGL  T+ A WKK
Sbjct:   67 APTPVRTPVELLLAVAFPLHAHVSMNYVISDYVPRFAQQPARIAMLGVTAVASLGLIKLSLTGPGLVSTVGALWKK 142          
BLAST of mRNA_H-paniculata_contig20669.5366.1 vs. uniprot
Match: A0A8J2SY23_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SY23_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 7.790e-22
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = 0
Query:    2 PLAIATSPSAITMPVDVVLGIAMPLHAHIGMNYVISDYVPR----ASRGPARGAMLAATVIATLGLLKLNVAGPGLTETLKATWKK 83
            P+A+AT  + ++ PVD+ L I  PLH HIGMNYVI+DYVP+    A+ GPAR  M+  T    LGL KLNV GPG+T TLKA W+K
Sbjct:   36 PVALATDNTFLSFPVDMGLAIMFPLHGHIGMNYVITDYVPKLFSKAAVGPARAVMVGVTGFTMLGLTKLNVEGPGITGTLKALWRK 121          
BLAST of mRNA_H-paniculata_contig20669.5366.1 vs. uniprot
Match: G4YXS4_PHYSP (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=5 Tax=Phytophthora TaxID=4783 RepID=G4YXS4_PHYSP)

HSP 1 Score: 92.4 bits (228), Expect = 1.140e-21
Identity = 45/83 (54.22%), Postives = 61/83 (73.49%), Query Frame = 0
Query:    1 MPLAIATSPSAITMPVDVVLGIAMPLHAHIGMNYVISDYVPRASRGPARGAMLAATVIATLGLLKLNVAGPGLTETLKATWKK 83
            +PLA   SPS + +PVD+ LG+ +P+HAHIGMN VISDYVP++ R  AR   L AT +  LGLL++NV GPG+TE +K  W++
Sbjct:   72 VPLAFVLSPSPLALPVDLALGVILPVHAHIGMNNVISDYVPKSVRMLARLGWLGATSLMFLGLLRVNVEGPGITEVVKTVWRE 154          
BLAST of mRNA_H-paniculata_contig20669.5366.1 vs. uniprot
Match: A0A2D4BN75_PYTIN (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BN75_PYTIN)

HSP 1 Score: 92.0 bits (227), Expect = 1.570e-21
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 0
Query:    1 MPLAIATSPSAITMPVDVVLGIAMPLHAHIGMNYVISDYVPRASRGPARGAMLAATVIATLGLLKLNVAGPGLTETLKATWKK 83
            +P A   SPS +++PVD  LG+ +P+HAHIGMN VISDYVP+A R  AR A L  T +  LG+L+ N+ GPGLTETLK  W++
Sbjct:   70 VPAAFVLSPSVLSVPVDYALGVIIPVHAHIGMNNVISDYVPKAHRTLARLAWLGVTGVMFLGILRNNIEGPGLTETLKTFWRE 152          
BLAST of mRNA_H-paniculata_contig20669.5366.1 vs. uniprot
Match: A0A662YC78_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YC78_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.130e-21
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 0
Query:    1 MPLAIATSPSAITMPVDVVLGIAMPLHAHIGMNYVISDYVPRASRGPARGAMLAATVIATLGLLKLNVAGPGLTETLKATWKK 83
            +P+A   SPS + MPVD+ LG  +P+HAHIGMN VISDYVP+  R  AR + L  T +  LGLL++N+ GPGLTE +K  W++
Sbjct:   86 VPVAFVLSPSPLAMPVDLALGAILPIHAHIGMNNVISDYVPKRMRTLARVSWLGVTAVMFLGLLRVNIEGPGLTECVKTVWRE 168          
BLAST of mRNA_H-paniculata_contig20669.5366.1 vs. uniprot
Match: M4BRN0_HYAAE (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BRN0_HYAAE)

HSP 1 Score: 89.4 bits (220), Expect = 3.760e-21
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 0
Query:    1 MPLAIATSPSAITMPVDVVLGIAMPLHAHIGMNYVISDYVPRASRGPARGAMLAATVIATLGLLKLNVAGPGLTETLKATWKK 83
            +PLA   SPS + +PVD+ +G+ +P+HAHIGMN VISDYVP+  R  AR   L AT +  LGLL++N+ GPG+TE +K  W++
Sbjct:   12 VPLAFVLSPSPLALPVDLAIGVLVPVHAHIGMNNVISDYVPKNVRTLARLGWLGATSLMLLGLLRVNLEGPGITEVVKTIWRE 94          
BLAST of mRNA_H-paniculata_contig20669.5366.1 vs. uniprot
Match: A4S1G3_OSTLU (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S1G3_OSTLU)

HSP 1 Score: 89.0 bits (219), Expect = 6.120e-21
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 0
Query:    6 ATSPSAITMP-----VDVVLGIAMPLHAHIGMNYVISDYVPRASRGPARGAMLAATVIATLGLLKLNVAGPGLTETLKATWK 82
            A +P+A  MP     +DV LG AMP+H+HI MN++ISDYVP+ +RGP R A LA T    +GL KLN  G G+T T+K+ WK
Sbjct:   26 ALAPAAAAMPEGQLAIDVALGAAMPVHSHIAMNFIISDYVPKGARGPTRAATLALTAATAVGLFKLNTQGDGITRTVKSLWK 107          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20669.5366.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTY7_ECTSI1.950e-3880.49Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
W7TCL8_9STRA1.250e-2661.73Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A7S3PKA9_9STRA1.290e-2358.54Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A835YQL9_9STRA3.110e-2256.58Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A8J2SY23_9STRA7.790e-2255.81Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
G4YXS4_PHYSP1.140e-2154.22Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A2D4BN75_PYTIN1.570e-2155.42Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A662YC78_9STRA3.130e-2153.01Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
M4BRN0_HYAAE3.760e-2151.81Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A4S1G3_OSTLU6.120e-2152.44Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034804Fumarate reductase/succinate dehydrogenase, transmembrane subunitGENE3D1.20.1300.10coord: 1..82
e-value: 4.6E-17
score: 63.9
IPR034804Fumarate reductase/succinate dehydrogenase, transmembrane subunitSUPERFAMILY81343Fumarate reductase respiratory complex transmembrane subunitscoord: 10..61
NoneNo IPR availablePFAMPF05328CybScoord: 10..82
e-value: 2.1E-10
score: 40.4
NoneNo IPR availablePANTHERPTHR13337:SF2SUCCINATE DEHYDROGENASE [UBIQUINONE] CYTOCHROME B SMALL SUBUNIT, MITOCHONDRIALcoord: 6..82
NoneNo IPR availableTMHMMTMhelixcoord: 50..72
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
IPR007992Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, CybSPANTHERPTHR13337SUCCINATE DEHYDROGENASEcoord: 6..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20669contigH-paniculata_contig20669:1433..2546 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20669.5366.1mRNA_H-paniculata_contig20669.5366.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig20669 923..3152 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig20669.5366.1 ID=prot_H-paniculata_contig20669.5366.1|Name=mRNA_H-paniculata_contig20669.5366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
MPLAIATSPSAITMPVDVVLGIAMPLHAHIGMNYVISDYVPRASRGPARG
AMLAATVIATLGLLKLNVAGPGLTETLKATWKKRTTNGQNAEDDTTTK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR034804SQR/QFR_C/D
IPR007992CybS