prot_H-paniculata_contig2064.5362.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2064.5362.1
Unique Nameprot_H-paniculata_contig2064.5362.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length534
Homology
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BLAST of mRNA_H-paniculata_contig2064.5362.1 vs. uniprot
Match: R7TW23_CAPTE (RING-type domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TW23_CAPTE)

HSP 1 Score: 57.0 bits (136), Expect = 4.450e-6
Identity = 23/54 (42.59%), Postives = 34/54 (62.96%), Query Frame = 0 
Query:  479 DAENRDDCMLCMERPRTVVFQPCMHLVNCKECSVGCKQCPYCQVKVKKMLEVYR 532
            D +  D C +C    R VVFQPC HLV CK+C+   K CP C+  +K +++++R
Sbjct:   97 DFKTADTCTVCFLGQREVVFQPCAHLVCCKDCAQCVKNCPVCRGMIKDVIKIFR 150
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BLAST of mRNA_H-paniculata_contig2064.5362.1 vs. uniprot
Match: A0A6C0LZC8_9ZZZZ (RING-type domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LZC8_9ZZZZ)

HSP 1 Score: 58.2 bits (139), Expect = 1.460e-5
Identity = 22/47 (46.81%), Postives = 29/47 (61.70%), Query Frame = 0 
Query:  485 DCMLCMERPRTVVFQPCMHLVNCKECSVGCKQCPYCQVKVKKMLEVY 531
            DC +C E+PR+VVF PC HL+ C  CS    QCP C+  +   + VY
Sbjct:  267 DCSVCYEKPRSVVFMPCKHLIVCSSCSEKISQCPMCRTDIADKIGVY 313
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BLAST of mRNA_H-paniculata_contig2064.5362.1 vs. uniprot
Match: A0A0J7JU07_LASNI (Zinc finger protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7JU07_LASNI)

HSP 1 Score: 54.3 bits (129), Expect = 2.200e-5
Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 0 
Query:  486 CMLCMERPRTVVFQPCMHLVNCKECSVGCKQCPYCQVKVKKMLEVY 531
            C++C++R R  VFQPC HL+ C  CSV    CP C+ +V   + VY
Sbjct:   78 CIVCIDRRRDTVFQPCSHLIVCTVCSVRIDDCPICRKRVTSKMRVY 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2064.5362.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
R7TW23_CAPTE4.450e-642.59RING-type domain-containing protein n=1 Tax=Capite... [more]
A0A6C0LZC8_9ZZZZ1.460e-546.81RING-type domain-containing protein n=1 Tax=viral ... [more]
A0A0J7JU07_LASNI2.200e-545.65Zinc finger protein n=1 Tax=Lasius niger TaxID=677... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 421..483
NoneNo IPR availableCOILSCoilCoilcoord: 310..330
NoneNo IPR availableCOILSCoilCoilcoord: 250..270
NoneNo IPR availableCOILSCoilCoilcoord: 153..173
NoneNo IPR availableCOILSCoilCoilcoord: 175..195
NoneNo IPR availableCOILSCoilCoilcoord: 204..231
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 483..526
e-value: 2.3E-10
score: 40.2
NoneNo IPR availablePANTHERPTHR20916:SF7HOMEOBOX PROTEIN 13coord: 42..227
NoneNo IPR availablePANTHERPTHR20916CYSTEINE AND GLYCINE-RICH PROTEIN 2 BINDING PROTEINcoord: 42..227
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 461..532
e-value: 2.3E-13
score: 51.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 486..521
score: 9.48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2064contigH-paniculata_contig2064:1772..9758 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2064.5362.1mRNA_H-paniculata_contig2064.5362.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2064 741..17248 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2064.5362.1 ID=prot_H-paniculata_contig2064.5362.1|Name=mRNA_H-paniculata_contig2064.5362.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=534bp
MSHLLEHSGPEGTDYESDYFNDNHNLYSDDGHGGEGRQQRGQSHNNDKNR
RTKHIQRGQNKNKNNNNNNNNNIINNSSNNNNNNSSNRGRNRRSKPQQRK
RRRIESPHPAGDNKKNLNNDYHPSGNDSGSDHARGRGRHGEQVEIPNFLE
DAAAAWANEVHRLREEFETERREETKRLREDLNILNCQLSDAKINAEKAH
SNQAAVLAATNAFHTNEIQQLQNQINSAKGLYALGVQDLVSMTNCEIALR
EELTDKIKELSQKNLELAAKDAELAAKDVDLATKEAELQTLASALNTVRA
SEQATWDECRLALEKQLVQAQQAYEQSQQRTGALELQAVADDLASTSRIQ
DLAGEIEALRGCVAKLLHAGNLRPDKEGLDYQAAEAAVLAAEADLVVREQ
RRLRSQFCSLRANSLAHKTEKGELKREKDEFKRENDRFKRENDRFKREND
KLNREKDDLLGRVASAQEENRQERCRRLDAENRDDCMLCMERPRTVVFQP
CMHLVNCKECSVGCKQCPYCQVKVKKMLEVYRP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING