prot_H-paniculata_contig2018.5197.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig2018.5197.1
Unique Name	prot_H-paniculata_contig2018.5197.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	317

Homology

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BLAST of mRNA_H-paniculata_contig2018.5197.1 vs. uniprot
Match: A0A6H5JIV0_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIV0_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 1.550e-64
Identity = 114/164 (69.51%), Postives = 128/164 (78.05%), Query Frame = 0

Query:  109 RLAAAREDCKSCKEQELSEEERRVGKVAMWTQEDEDALQSRRAELQEANRQEKLRNVKIAVGSFLSSVGLFFLQHSVIAPAQANPVVLLRAMEMSSSPLATALTNGRPTVVDFYADWCENCKAMAPSMEQIEEQFRNQVNFVVIDGSAEKNYDLVRAAVVDFLP 272
            RLAAAREDCKSC E EL E            +       +RR  L+E NR+EK RN KIA GSFLS+VGLFF QH+ IAPAQANPVVLLRAME +S+PLATALTNG+PTVVDFYADWCENCKAMAPSM +IEEQF+NQ+NFVV+DGSAEKNYDLV A  VD +P
Sbjct:   61 RLAAAREDCKSCMEAELLEXXXXXXXXXXXXE----GAATRRGALEEFNRREKARNTKIAFGSFLSAVGLFFCQHAAIAPAQANPVVLLRAMETTSAPLATALTNGKPTVVDFYADWCENCKAMAPSMREIEEQFKNQINFVVVDGSAEKNYDLVDAFRVDGIP 220

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BLAST of mRNA_H-paniculata_contig2018.5197.1 vs. uniprot
Match: A0A7S3XXL6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXL6_HETAK)

HSP 1 Score: 107 bits (266), Expect = 1.410e-24
Identity = 61/146 (41.78%), Postives = 83/146 (56.85%), Query Frame = 0

Query:  165 VKIAVGSFLSSVGLFFLQHSVIAPAQANPVVLLRAMEMSSSPLATALTNGRPTVVDFYADWCENCKAMAPSMEQIEEQFRNQVNFVVIDGSAEKNYDLVRAAVVDFLPAYGTCLMLFSVEISC------PILKRELTHVEVCFALP 304
            ++ A  S L++VGLF  Q +        P+ LLRAM   S PLA  L NG+PTVVDFYADWC NCKAMAP+M  +E+++  +VNF+ +DG+  +N DLV    VD +P          VE +       PIL+ E+  +     LP
Sbjct:    9 LRAAAASALAAVGLFCYQRA----HPPEPLQLLRAMARESPPLAVCLANGKPTVVDFYADWCSNCKAMAPTMRALEKEYAGRVNFLAVDGADPRNADLVGRFRVDGIPHLALITADHEVETALIGMVPKPILEEEMDALLAAKPLP 150

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BLAST of mRNA_H-paniculata_contig2018.5197.1 vs. uniprot
Match: A0A7S2ST54_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST54_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.770e-24
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 0

Query:  161 KLRNVKIAVGSFLSSVGLFFLQHSVIAPAQANPVVLLRAMEMSSSPLATALTNGRPTVVDFYADWCENCKAMAPSMEQIEEQFRNQVNFVVIDGSAEKNYDLVRAAVVDFLPAYG 275
            K RN+  A+GS L+ VG F+ + S       + V +L AME +S PLA  L NG+PT++DFYADWCENCKAMAP M Q+E ++  +VNFV I+G +  N D V    VD +P Y 
Sbjct:  103 KRRNLFTAIGSALTGVGAFWRKRS----QPTDSVAILHAMERNSPPLAQCLENGKPTIIDFYADWCENCKAMAPRMAQLESRYGTRVNFVTINGDSRANDDWVDLFRVDGIPHYA 213

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BLAST of mRNA_H-paniculata_contig2018.5197.1 vs. uniprot
Match: A0A7S2V5P4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P4_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.350e-22
Identity = 58/121 (47.93%), Postives = 76/121 (62.81%), Query Frame = 0

Query:  152 ELQEANRQEKLRNVKIAVGSFLSSVGLFFLQHSVIAPAQANPVVLLRAMEMSSSPLATALTNGRPTVVDFYADWCENCKAMAPSMEQIEEQFRNQVNFVVIDGSAEKNYDLVRAAVVDFLP 272
            E+Q    +E+  N+ IA  S L++V LF  Q     P   + + LLRAME  S+PL    TNG+PTVVDFYADWC  CK MAPSM  +E++F  +VNFV ++G+  KN DLV    VD +P
Sbjct:   17 EMQVEVTKERKNNLLIACSSVLAAVCLFATQR-FFPP---DSLSLLRAMEAESTPLIAVQTNGKPTVVDFYADWCGYCKTMAPSMRTVEKEFAGRVNFVTVNGADPKNADLVYKFKVDGIP 133

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BLAST of mRNA_H-paniculata_contig2018.5197.1 vs. uniprot
Match: A0A7S0VTE4_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VTE4_9CRYP)

HSP 1 Score: 104 bits (260), Expect = 1.450e-22
Identity = 55/113 (48.67%), Postives = 73/113 (64.60%), Query Frame = 0

Query:  163 RNVKIAVGSFLSSVGLFFLQHSVIAPAQANPVVLLRAMEMSSSPLATALTNGRPTVVDFYADWCENCKAMAPSMEQIEEQFRN-QVNFVVIDGSAEKNYDLVRAAVVDFLPAY 274
            RNV +A+ S L S GLF            +P+ LLR ME SS P+  AL NG+PTVV+F+ADWC++CKAMAP M ++EEQ+   QVNFVV+D   ++N  LV    VD +P +
Sbjct:  113 RNVALAIASPLISAGLFAFNKQ----QPQDPLTLLRRMEASSPPIKEALQNGKPTVVEFFADWCKDCKAMAPQMAELEEQYAGKQVNFVVLDAEKKENEKLVGLLQVDVIPQF 221

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BLAST of mRNA_H-paniculata_contig2018.5197.1 vs. uniprot
Match: A0A5J4YW86_PORPP (Thiol:disulfide interchange protein TxlA-like n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YW86_PORPP)

HSP 1 Score: 102 bits (253), Expect = 2.540e-22
Identity = 47/102 (46.08%), Postives = 68/102 (66.67%), Query Frame = 0

Query:  171 SFLSSVGLFFLQHSVIAPAQANPVVLLRAMEMSSSPLATALTNGRPTVVDFYADWCENCKAMAPSMEQIEEQFRNQVNFVVIDGSAEKNYDLVRAAVVDFLP 272
            S L SVGL F+ H V+  +Q +P V++  +E  + P+  AL+NG+PTV++FYADWC +CK MAP + ++   F   VNFVV++G A +N DLV    VD +P
Sbjct:   43 SALISVGLGFVIHFVLTHSQLSPTVIMHELEKKNPPIEVALSNGKPTVIEFYADWCTDCKVMAPKLSKLHATFSPTVNFVVVNGDAPENQDLVSQFRVDGIP 144

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BLAST of mRNA_H-paniculata_contig2018.5197.1 vs. uniprot
Match: A0A0G4EGV6_VITBC (Thioredoxin domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EGV6_VITBC)

HSP 1 Score: 102 bits (253), Expect = 2.660e-22
Identity = 57/121 (47.11%), Postives = 78/121 (64.46%), Query Frame = 0

Query:  155 EANRQEKLRNVKIAVGSFLSSVGLFFLQHSVIAPAQANPVVLLRAMEMSSSPL-ATALTNGRPTVVDFYADWCENCKAMAPSMEQIEEQFRNQVNFVVIDGSAE--KNYDLVRAAVVDFLP 272
            EA   E+  N+++A+GS L    L+  Q   + P +A+P+V+LR ME  S P+ A   TNGRPTV+DFYA WCENCK MAPSM  IE+++  +VNFV +DGS     +  LV+   VD +P
Sbjct:   27 EALNVERRENMRVALGSGLGGALLYGGQR--LNPLRADPLVILREMERDSPPVDAQLFTNGRPTVIDFYAPWCENCKTMAPSMRTIEKEYSGRVNFVTVDGSRSDTSSQRLVQRFRVDAIP 145

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BLAST of mRNA_H-paniculata_contig2018.5197.1 vs. uniprot
Match: I2CQS5_NANGC (Thioredoxin domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQS5_NANGC)

HSP 1 Score: 101 bits (251), Expect = 3.350e-21
Identity = 60/127 (47.24%), Postives = 80/127 (62.99%), Query Frame = 0

Query:  148 SRRAELQEANRQEKLRNVKIAVGSFLSSVGLFFLQHSVIAPAQANPVVLLRAMEMSSSPLATALTNGRPTVVDFYADWCENCKAMAPSMEQIEEQFRNQVNFVVIDGSA--EKNYDLVRAAVVDFLP 272
            SR A LQE   +EK   V  AV S LS+V +FF QH+   P +A  + LLR M+  S  + T   NGRPTVVDFYA+WCENCK MAP +  +E +++++VNFVV++G    E +  LV    VD +P
Sbjct:  117 SRMARLQEELTKEKRNKVVTAVASVLSAVAVFFYQHT--HPVEA--ITLLRQMQAESPNIRTVSGNGRPTVVDFYAEWCENCKEMAPVLRAVEGKYKDKVNFVVVNGDDRNEASSVLVERFRVDGIP 239

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BLAST of mRNA_H-paniculata_contig2018.5197.1 vs. uniprot
Match: A0A7S1CTK7_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CTK7_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.490e-20
Identity = 50/114 (43.86%), Postives = 73/114 (64.04%), Query Frame = 0

Query:  161 KLRNVKIAVGSFLSSVGLFFLQ--HSVIAPAQANPVVLLRAMEMSSSPLATALTNGRPTVVDFYADWCENCKAMAPSMEQIEEQFRNQVNFVVIDGSAEKNYDLVRAAVVDFLP 272
            KLRNV IAV SF  ++  F  Q  H V A      V +L +ME  S+PL +   NG+PTV+DF+A WC NCK  AP+++ +EEQ+ + VNF++++G   KN+ L++   VD +P
Sbjct:    8 KLRNVIIAVSSFAFAIANFVWQLAHPVTA------VSILVSMENKSAPLTSIGNNGKPTVIDFWAPWCSNCKVAAPTLQAVEEQYGDSVNFIMVNGDDGKNWPLIQLFGVDAIP 115

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BLAST of mRNA_H-paniculata_contig2018.5197.1 vs. uniprot
Match: A0A0G4GQ67_9ALVE (Thioredoxin domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GQ67_9ALVE)

HSP 1 Score: 96.3 bits (238), Expect = 2.200e-19
Identity = 49/118 (41.53%), Postives = 76/118 (64.41%), Query Frame = 0

Query:  156 ANRQEKLRNVKIAVGSFLSSVGLFFLQHSVIAPAQANPVVLLRAMEMSSSPLATAL-TNGRPTVVDFYADWCENCKAMAPSMEQIEEQFRNQVNFVVIDGSAEKNYDLVRAAVVDFLP 272
            A+ +E   N  +A+ S L     +F Q     P++ +P+V+L+ +EM+S  + T L +NG+PTV++FYA WCENCK MAP M  +E+ +  ++NFV +DG   +N DLVR+  VD +P
Sbjct:   74 ASSEETAGNKAVAIVSALFGFVFYFFQLVRGVPSE-DPLVILKRLEMNSPVVDTRLVSNGKPTVMEFYAPWCENCKVMAPLMASVEKSYEGRINFVTVDGGKPENADLVRSLRVDAIP 190

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig2018.5197.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig2018.5197.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JIV0_9PHAE	1.550e-64	69.51	Thioredoxin domain-containing protein n=2 Tax=Ecto...	[more]
A0A7S3XXL6_HETAK	1.410e-24	41.78	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7S2ST54_9STRA	1.770e-24	48.70	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7S2V5P4_9STRA	1.350e-22	47.93	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A7S0VTE4_9CRYP	1.450e-22	48.67	Hypothetical protein n=1 Tax=Hemiselmis tepida Tax...	[more]
A0A5J4YW86_PORPP	2.540e-22	46.08	Thiol:disulfide interchange protein TxlA-like n=1 ...	[more]
A0A0G4EGV6_VITBC	2.660e-22	47.11	Thioredoxin domain-containing protein n=1 Tax=Vitr...	[more]
I2CQS5_NANGC	3.350e-21	47.24	Thioredoxin domain-containing protein n=1 Tax=Nann...	[more]
A0A7S1CTK7_9STRA	3.490e-20	43.86	Hypothetical protein n=1 Tax=Skeletonema marinoi T...	[more]
A0A0G4GQ67_9ALVE	2.200e-19	41.53	Thioredoxin domain-containing protein n=1 Tax=Chro...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 139..163
None	No IPR available	GENE3D	3.40.30.10		coord: 198..281 e-value: 4.1E-16 score: 60.8
None	No IPR available	PANTHER	PTHR47353	FAMILY NOT NAMED	coord: 117..270
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 187..316
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 48..166
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..25
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 167..186
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 26..47
None	No IPR available	TMHMM	TMhelix		coord: 25..47
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 212..272 e-value: 7.6E-12 score: 45.1
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 186..316 score: 10.695
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 194..272

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig2018	contig	H-paniculata_contig2018:11625..21148 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig2018.5197.1	mRNA_H-paniculata_contig2018.5197.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig2018 11625..21148 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig2018.5197.1 ID=prot_H-paniculata_contig2018.5197.1|Name=mRNA_H-paniculata_contig2018.5197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=317bp
VRPTIPTSRGEEDTKPEPMKLSTRPVMSHVLGFAALVICIVTITLPGRTQ
AFFFPRMLTATSGLNVKCIRAQRTAVCAGSLCTAKNTACGRGLFASSCSA
RASLGATGRLAAAREDCKSCKEQELSEEERRVGKVAMWTQEDEDALQSRR
AELQEANRQEKLRNVKIAVGSFLSSVGLFFLQHSVIAPAQANPVVLLRAM
EMSSSPLATALTNGRPTVVDFYADWCENCKAMAPSMEQIEEQFRNQVNFV
VIDGSAEKNYDLVRAAVVDFLPAYGTCLMLFSVEISCPILKRELTHVEVC
FALPLTCCLSDTKLDK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013766	Thioredoxin_domain
IPR036249	Thioredoxin-like_sf