prot_H-paniculata_contig16956.3894.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig16956.3894.1
Unique Nameprot_H-paniculata_contig16956.3894.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length398
Homology
BLAST of mRNA_H-paniculata_contig16956.3894.1 vs. uniprot
Match: D7G0M6_ECTSI (Nucleoporin_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M6_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 9.880e-85
Identity = 219/410 (53.41%), Postives = 249/410 (60.73%), Query Frame = 0
Query:    2 HNPQVNLFFDDFSPDQSAAMCFSIACGLPKDLSALSSDDAGGNIMA-------------AAAAAPNHQVRARALDAALKNCKPPGFSSPLAAAGGGGSXXXXXXXXXXMDIGGVTIGEKFNNSALHNGLQLFIARLLRPFWFRPVVICGGDNGSGGXXXXXXXXXXXXDGQAKSGIGGGVPAIMDLAALIGPLELLRVSIRSAFPRAVAEDLAAKAXXXXXXXXXXXXXPAEQGVALLIAAAKDWKGERALGGEGQLARACAALESVGRLDAVVDVCMSCARNFDPHGRGGAGRGXXXXXXXXXXXXXXXXXVTTLAWEEGVYQGGGVVGTAEREKATLECYQRVLNTVLGLMETPPPSPQNGEAQVNGGFDSNARSTYSRNMERAAGLLSRILAYDAPKLHEMLFQLLE 398
            H   V LFF+DFSPDQSAAMCFSIACGLP+DL   S        +A             AA   P+H VRARALDAAL  CKPPGFSSP   AGGG  XXXXXX       GGV +GEKF NSALHNGLQLFI RLLRPFWF PVV+         XXXXXXXXXXXX              + DL AL  PLE LR SIR+ FPRAV EDLAA A              A  G  LL  AA++W+GERALG +GQLARACAAL +VGRL+AVVDVCM+CA+NF   G G    GXXXXXXXXX            AWEEGVYQGGG+VG  +REKA LECY+RVL  V+GL++      ++  A    G          R  ++   L++R L+Y AP L EMLF +LE
Sbjct:  690 HVEGVVLFFNDFSPDQSAAMCFSIACGLPRDLGTGSGXXXXXXPVAGSTXXXXCNPSVPAANGVPSHTVRARALDAALMICKPPGFSSPGQPAGGGIXXXXXXXGGVAATAGGVIMGEKFTNSALHNGLQLFIGRLLRPFWFLPVVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXF------VRDLEALRVPLESLRASIRAVFPRAVGEDLAALARLTAAAEAD-----ARWGAELLAEAAREWRGERALGADGQLARACAALTAVGRLEAVVDVCMTCAKNF---GEGVVASGXXXXXXXXXVE----------AWEEGVYQGGGIVGAEQREKARLECYKRVLEAVVGLLKQEQQQLRSATAAAGQGG--------VRGSKKVDSLIARCLSYKAPLLEEMLFGVLE 1067          
BLAST of mRNA_H-paniculata_contig16956.3894.1 vs. uniprot
Match: A0A6H5J909_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J909_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 7.610e-51
Identity = 200/572 (34.97%), Postives = 232/572 (40.56%), Query Frame = 0
Query:   21 MCFSIACGLPKDLSA-----------LSSDDAGGNI---MAAAAAAPNHQVRARALDAALKNCKPPGFSSPLAAAGGGGSXXXXXXXXXXMDIGGVTIGEKFNNSALHNGLQLFIARLLRPFWFRPVVICGGDNGSGGXXXXXXXXXXXXDGQAKSGIGGGVPAIMDLAALIGPLELLRVSIRSAFPRAVAEDLAAKAXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PAEQGVALLIAAAKDWKGERALGGEGQLARACAALESVGRLDAVVDVCMSCARNFDPHGRGGAGRGXXXXXXXXXXXXXXXXXVTTLAWEEGVYQGGGVVGTAEREKATLECYQRVLNTVLGLMETPPPSPQNGEAQVNGGFDSNARSTYSRNMERAAGLLSRILAYDAPKLHEMLFQLLE 398
            MCFSIACGLP+DL             ++    GG     +  A   PNH VRARALDAAL  CKPPGFSSP   AGGG      XXXX     GGV +GEKF NSALHNGLQLFI RLLRPFWF PVV+         XXXXXXXXXXXX              + DL AL  PLE LR SIR+ FPRAV EDLAA A                                                                                                                                                                                                  A +G  LL  AA++W+GERALG +GQLARACAAL +VGRL+AVVDVCM+CA+NF   G G    GXXXXXXXX             AWEEGVYQGGG+VG  +REKA LECY+RVL  V+GL++      ++             R +     ++   L++R L+Y AP L EMLF +LE
Sbjct:    1 MCFSIACGLPRDLGTGCGGXXXXXXPVAGSTGGGGYNPSVPTAYGVPNHTVRARALDAALMICKPPGFSSPGQPAGGG--IGIGXXXXVAATAGGVIMGEKFTNSALHNGLQLFIGRLLRPFWFLPVVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXF------VRDLEALRVPLESLRASIRAVFPRAVGEDLAALASREAKAAAAVPASGGLLGNXXXXXXXXXXGLVVAPGGYPTPETPQQRNQKALKREALEVHAAYRLVSRAAEAVRMAGVLARAAASSAVGGAAAVDNVPWSSLDGVPLWRLVTGGDEHRRASFLLADLVGATTKGNNNAESRRDYARELGSWCRGFFGAGDRQTFEGVELLRRAAASGXXXXXXXXRLTAAAEADARRGAELLAEAAREWRGERALGADGQLARACAALTAVGRLEAVVDVCMTCAKNF---GEGVVASGXXXXXXXXGLE----------AWEEGVYQGGGIVGAEQREKARLECYKRVLEAVVGLLKQERQQLRSAXXXXXXXGQGGVRGS-----KKVDSLIARCLSYKAPLLEEMLFGVLE 546          
BLAST of mRNA_H-paniculata_contig16956.3894.1 vs. uniprot
Match: A0A7R9YE90_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE90_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.020e-7
Identity = 49/154 (31.82%), Postives = 69/154 (44.81%), Query Frame = 0
Query:    6 VNLFFDDFSPDQSAAMCFSIACGLPKDLSALSS---------DDAGGNIMAAAAAAPN-----HQVRARALDAALKNCKPPGFSSPLAAAGGGGSXXXXXXXXXXMDI-------GGVTIGEKFNNSALHNGLQLFIARLLRPFWFRPVVICGG 138
            +  FF  F  +QS AMCFSIACGLP DL   +S         +D+   + AAA+  P+      +VR RA+  A +    P  S PL++ G   S                           +F+ S  H GL L   R+LRP WF+P+++  G
Sbjct:  615 IGTFFQLFGKEQSCAMCFSIACGLPTDLVEAASAASVAFPTQNDSALALAAAASPGPSLNPTVERVRERAVLVAQQLGGNPSISPPLSSGGEATSTGMSVATPGTPGTPRHQPTAANTVFTPEFSYSDQHEGLVLLATRILRPLWFKPIILAEG 768          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16956.3894.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0M6_ECTSI9.880e-8553.41Nucleoporin_N domain-containing protein n=1 Tax=Ec... [more]
A0A6H5J909_9PHAE7.610e-5134.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9YE90_9STRA1.020e-731.82Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.58.1780coord: 1..156
e-value: 2.2E-10
score: 42.6
IPR004870Nucleoporin, Nup155-likePANTHERPTHR10350NUCLEAR PORE COMPLEX PROTEIN NUP155coord: 4..140

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16956contigH-paniculata_contig16956:555..4884 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16956.3894.1mRNA_H-paniculata_contig16956.3894.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig16956 555..4884 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig16956.3894.1 ID=prot_H-paniculata_contig16956.3894.1|Name=mRNA_H-paniculata_contig16956.3894.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=398bp
HHNPQVNLFFDDFSPDQSAAMCFSIACGLPKDLSALSSDDAGGNIMAAAA
AAPNHQVRARALDAALKNCKPPGFSSPLAAAGGGGSGGRGGGGPGGMDIG
GVTIGEKFNNSALHNGLQLFIARLLRPFWFRPVVICGGDNGSGGGKSSSA
GAKRSADGQAKSGIGGGVPAIMDLAALIGPLELLRVSIRSAFPRAVAEDL
AAKAAKEAREAAAATAAPAEQGVALLIAAAKDWKGERALGGEGQLARACA
ALESVGRLDAVVDVCMSCARNFDPHGRGGAGRGGDGGSGGGNHGGGGGGG
VTTLAWEEGVYQGGGVVGTAEREKATLECYQRVLNTVLGLMETPPPSPQN
GEAQVNGGFDSNARSTYSRNMERAAGLLSRILAYDAPKLHEMLFQLLE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004870Nucleoporin_Nup155