prot_H-paniculata_contig16199.3568.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig16199.3568.1
Unique Nameprot_H-paniculata_contig16199.3568.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length175
Homology
BLAST of mRNA_H-paniculata_contig16199.3568.1 vs. uniprot
Match: UPI000B8A7035 (uncharacterized protein LOC110788974 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8A7035)

HSP 1 Score: 58.5 bits (140), Expect = 7.770e-7
Identity = 32/97 (32.99%), Postives = 54/97 (55.67%), Query Frame = 0
Query:   21 KAVQAGRCWYNELNNDLKAPGFQSSYA--KLCAYSRIVDRELDILVVAYGYDRLIASKGNEAMDWFVAELESGYKIQDLEEVSYYIGCPITRNRDAW 115
            K  +A RCW+ +L+  LK  GF+ SY+   LC  S+    EL + V+ Y  D +IA     A++ F A L   +K++DL  + Y++G  + R++  +
Sbjct:  619 KRWEAPRCWFEKLSTALKQYGFKQSYSDYSLCTLSK---GELQLSVLVYVDDMIIAGNNVFALNSFKAYLSQCFKMKDLGHLKYFLGLEVARSKSGF 712          
BLAST of mRNA_H-paniculata_contig16199.3568.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 3.320e-5
Identity = 37/143 (25.87%), Postives = 72/143 (50.35%), Query Frame = 0
Query:    3 IELSEAYQALPGAVGKLKKAV----QAGRCWYNELNNDLKAPGFQSSYAKLCAYSRIVDRELDILVVAYGYDRLIASKGNEAMDWFVAELESGYKIQDLEEVSYYIGCPITRNRDAWELKIYQHLYVQTIA--VGIVKTSAIP 139
            ++L     ++ G + +L K++    QA R  Y  L +DL   GF+ S +  C    ++  E+ + + A   D ++ +      +  V  L      ++L EV +++GC I+R+R+A  ++I Q  Y++ +     I +TS+IP
Sbjct:    1 MKLPPGCDSMSGKIVRLNKSLYGLKQASRTSYKRLVSDLLWIGFEQSLSDPCVLRFMMGDEV-MGIFAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCEISRDREAGTIEISQESYIRNVLERFNICRTSSIP 142          
BLAST of mRNA_H-paniculata_contig16199.3568.1 vs. uniprot
Match: A0A396ICJ3_MEDTR (Putative RNA-directed DNA polymerase n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396ICJ3_MEDTR)

HSP 1 Score: 53.1 bits (126), Expect = 5.500e-5
Identity = 34/105 (32.38%), Postives = 55/105 (52.38%), Query Frame = 0
Query:   13 PGAVGKLKKAV----QAGRCWYNELNNDLKAPGFQSSYAKLCAYSRIVDRELDILVVAYGYDRLIASKGNEAMDWFVAELESGYKIQDLEEVSYYIGCPITRNRD 113
            P  V +LKK++    QA RCW+ +L   LK  GF  SY+    ++ +   E+ I V+ Y  D +IA     A+  F A L   + ++DL  + Y++G  + RN +
Sbjct:  587 PNLVCRLKKSLYGLKQAPRCWFAKLVTALKRYGFVQSYSDYSLFT-LHRGEIQINVLVYVDDLIIAGNDIAALKIFKAYLGVCFHMKDLGVLKYFLGLEVARNHE 690          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16199.3568.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI000B8A70357.770e-732.99uncharacterized protein LOC110788974 n=1 Tax=Spina... [more]
A0A6H5JRE7_9PHAE3.320e-525.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A396ICJ3_MEDTR5.500e-532.38Putative RNA-directed DNA polymerase n=1 Tax=Medic... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 18..129
e-value: 9.6E-13
score: 48.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16199contigH-paniculata_contig16199:1475..1999 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16199.3568.1mRNA_H-paniculata_contig16199.3568.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig16199 887..2320 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig16199.3568.1 ID=prot_H-paniculata_contig16199.3568.1|Name=mRNA_H-paniculata_contig16199.3568.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=175bp
MYIELSEAYQALPGAVGKLKKAVQAGRCWYNELNNDLKAPGFQSSYAKLC
AYSRIVDRELDILVVAYGYDRLIASKGNEAMDWFVAELESGYKIQDLEEV
SYYIGCPITRNRDAWELKIYQHLYVQTIAVGIVKTSAIPVEAGVKSLLKE
DGPKSPEEEKEMQRFRNRESVRLM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2