prot_H-paniculata_contig16142.3541.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig16142.3541.1
Unique Nameprot_H-paniculata_contig16142.3541.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length195
Homology
BLAST of mRNA_H-paniculata_contig16142.3541.1 vs. uniprot
Match: A0A6H5JBE3_9PHAE (PSII_Pbs31 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JBE3_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 1.740e-70
Identity = 128/194 (65.98%), Postives = 150/194 (77.32%), Query Frame = 0
Query:    1 MKTVCVALALAGSASAFITPMANVRATAPARSMTMSSQDQPMTRAEVLNTVFSAGAVAAVAAXXXXXXXFADGAKSRATQSRARGIYGGRVAALSDAVAKGDSAAVLAEKNAFQLFVSGAYSTTKGKRAEATKLASAVISAAEAGDASALKSSYAAFMKYTEEKSGYKGAGDGQGLGSEFDYKNRTPLGTVYQR 194
            MKT CVALAL GS+SAF+ PMANVR T+ + S +++   +PMTR++ L+ +F A A  A AA       FADGAKS ATQ+RARGIYG R+AAL  AV KGD+AA+LAE+N F+LF SG YST K K AEA  LA +V+ AA AGDA ALK SYAA+MKYTE+KSGY GAGDGQG GSEFDYKNRTPLGTVYQR
Sbjct:    1 MKTACVALALLGSSSAFVVPMANVRTTSSS-STSLAMSSEPMTRSQALSNLFGATAAVAAAAAVPGVA-FADGAKSPATQARARGIYGNRIAALKGAVDKGDTAAILAEQNCFRLFNSGVYSTDKAKFAEAEALAKSVVQAAGAGDAKALKDSYAAYMKYTEKKSGYNGAGDGQGFGSEFDYKNRTPLGTVYQR 192          
BLAST of mRNA_H-paniculata_contig16142.3541.1 vs. uniprot
Match: A0A835ZH21_9STRA (Extrinsic protein in photosystem II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH21_9STRA)

HSP 1 Score: 110 bits (274), Expect = 7.130e-27
Identity = 87/197 (44.16%), Postives = 121/197 (61.42%), Query Frame = 0
Query:    1 MKTVCVALALAGSASAFI--TPMANVRATAPARSMTMSSQDQPMTRAEVLNTVFSAGAVAAVAAXXXXXXXFADGAKSRATQSRARGIYGGRVAALSDAVAKGDSAAVLAEKNAFQLFVSGAYS-TTKGKRAEATKLASAVISAAEAGDASALKSSYAAFMKYTEEKSGYKGAGDGQGLGSEFDYKNRTPLGTVYQR 194
            MK V V L LA SASAF+   P+A VR+++   +MTMS+   P +R  VL TVF+A AVAAVA        FADGA S AT  RA+GIYG +V +L+ AV  G+  AV AEKNA  L  SG +  ++K  + +A  L +A+ +A +  +A+AL+S+Y   +K  +  +     GD QG  S++D+K RT  GT+Y R
Sbjct:    1 MKAVGV-LCLAASASAFMPAAPLAGVRSSS---AMTMSAA--PESRRAVLQTVFTAAAVAAVA---IPELAFADGAVSEATVQRAKGIYGDKVLSLAGAVKAGNFEAVAAEKNAITLLASGGFGMSSKADKKQAQALKNAIFAAIDTKNAAALQSAYGDLIKLAKIPASTGSGGDTQGYSSDYDWKARTAKGTIYVR 188          
BLAST of mRNA_H-paniculata_contig16142.3541.1 vs. uniprot
Match: B8CC14_THAPS (PSII_Pbs31 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CC14_THAPS)

HSP 1 Score: 107 bits (267), Expect = 5.790e-26
Identity = 83/190 (43.68%), Postives = 109/190 (57.37%), Query Frame = 0
Query:    6 VALALAGSASAFITPMANVRATAPA-RSMTMSSQDQPMTRAEVLNTVFSAGAVAAVAAXXXXXXXFADGAKSRATQSRARGIYGGRVAALSDAVAKGDSAAVLAEKNAFQLFVSGAYSTTKGKRAEATKLASAVISAAEAGDASALKSSYAAFMKYTEEKSGYKGAGDGQGLGSEFDYKNRTPLGTVYQR 194
            +AL L  SA+AF        A AP  R+ T  + D+ M  A++  +      + ++A         ADGAKS ATQSRARGIYG R+AAL  AV  GD  AV AEKNAF LF SGA +  K K++EA K  +A+ +A  A DA ALKS+YA +    + K        GQG  +++D+K RT LGT+Y R
Sbjct:    4 IALCLVASAAAF--------APAPVERASTSLNMDRRMATAQIATSAAVLAGLPSLA--------LADGAKSAATQSRARGIYGQRIAALESAVNAGDFGAVAAEKNAFILFNSGAIAD-KSKKSEAVKQTNAIFAAIRAKDAGALKSAYATYKGANDIKVIVADKESGQGYSNDYDFKARTTLGTIYVR 176          
BLAST of mRNA_H-paniculata_contig16142.3541.1 vs. uniprot
Match: A0A7S0JLR9_9EUKA (Hypothetical protein n=1 Tax=Minchinia chitonis TaxID=262233 RepID=A0A7S0JLR9_9EUKA)

HSP 1 Score: 97.8 bits (242), Expect = 3.500e-22
Identity = 78/191 (40.84%), Postives = 103/191 (53.93%), Query Frame = 0
Query:    8 LALAGSASAFITPMANVRATAPARSMTMSSQDQPMTRAEVLNTVFSAGAVAAVAAXXXXXXXFADGAKSRATQSRARGIYGGRVAALSDAVAKGDSAAVLAEKNAFQLFVSGAYSTTKGKRAEATKLASAVISAAEAGDASALKSSYAAFMKYTE----EKSGYKGAGDGQGLGSEFDYKNRTPLGTVYQR 194
            +AL  S++A   P  N R T     ++M++ D+         TVF   A AA          FADGA S+AT +R+RGIYG RVA L  AV  GD  AV AEKNAF LF SGAY+  K K+AEA    +A+ +A    D +AL S+Y +++   +    +     G   GQG G + DY+ RT  G VYQR
Sbjct:    4 IALVISSAAAFAPSTNQRQT-----VSMNAVDR--------RTVFGQIAGAAAVVVGAPSIAFADGAVSKATIARSRGIYGSRVADLEAAVNAGDFGAVAAEKNAFILFNSGAYAKNKPKQAEAIAGTNAIFAAIRGKDKAALSSAYKSYIAANDITPMQDVTTSGKNAGQGFGGDNDYRARTKAGAVYQR 181          
BLAST of mRNA_H-paniculata_contig16142.3541.1 vs. uniprot
Match: A0A1Z5JRZ4_FISSO (PSII_Pbs31 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JRZ4_FISSO)

HSP 1 Score: 97.8 bits (242), Expect = 3.770e-22
Identity = 79/197 (40.10%), Postives = 111/197 (56.35%), Query Frame = 0
Query:    1 MKTVCVALALAGSASAFITPMANVRATAPARSMTMSSQDQPMTRAEVLNTVFSAGAVAAVAAXXXXXXXFADGAKSRATQSRARGIYGGRVAALSDAVAKGDSAAVLAEKNAFQLFVSGAYSTTKGKRAEATKL--ASAVISAAEAGDASALKSSYAAFMKYTE-EKSGYKGAGDGQGLGSEFDYKNRTPLGTVYQR 194
            MK   +  ALA +++A   P  + RA     S +++S D+     ++      AGA AAVAA        ADGA S AT +RARGIYG R+AAL  AV KGD  A++AEKNAF LF SGAY T K K+ +   +   +A+  A +AGD +A+KS+Y +++   +        A  GQG   +FD++ RT  G +Y R
Sbjct:    1 MKFSALVCALAATSAAAFAPAVSERA-----STSLNSVDRRAAFGQI------AGAAAAVAAFPQLAN--ADGAVSAATVNRARGIYGDRIAALKSAVEKGDLDAIVAEKNAFVLFNSGAYPTAKSKQQKKAAIEGTNAIFKAIKAGDKAAVKSAYNSYVAANDISPLPAVDANKGQGYSGDFDFRVRTKAGAIYVR 184          
BLAST of mRNA_H-paniculata_contig16142.3541.1 vs. uniprot
Match: A0A7S2X8Z1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X8Z1_9EUKA)

HSP 1 Score: 97.1 bits (240), Expect = 5.130e-22
Identity = 83/165 (50.30%), Postives = 93/165 (56.36%), Query Frame = 0
Query:    2 KTVCVALALAGSASAFITPMANVRATAPARSMTMSSQDQPMTRAEVLNTVFSAGAVAAVAAXXXXXXXFADGAKSRATQSRARGIYGGRVAALSDAVAKGDSAAVLAEKNAFQLFVSGAYS----TTKGKRAEATKLASAVISAAEAGDASALKSSYAAFMKYTE 162
            K V  ALAL G  SAF         +APA  MTMS+Q    TR   L     A  V A A        FADGA S AT  RARG+YG RVAAL DAVAKGD  AVL EKNAF LF SGAY+      + K  EAT   +AVI AA   D +ALK++YA FM+  E
Sbjct:    7 KVVIAALALIGFVSAFAP-------SAPAPRMTMSAQ----TRGAFLKNAGIAVGVGASA--LIPSVAFADGAVSSATVQRARGVYGQRVAALKDAVAKGDFGAVLDEKNAFVLFTSGAYAKKSPADREKSKEATAAYTAVIDAASKKDGAALKAAYAKFMEVGE 158          
BLAST of mRNA_H-paniculata_contig16142.3541.1 vs. uniprot
Match: K0R4S8_THAOC (PSII_Pbs31 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R4S8_THAOC)

HSP 1 Score: 99.4 bits (246), Expect = 5.370e-22
Identity = 69/142 (48.59%), Postives = 87/142 (61.27%), Query Frame = 0
Query:   53 SAGAVAAVAAXXXXXXXFA--DGAKSRATQSRARGIYGGRVAALSDAVAKGDSAAVLAEKNAFQLFVSGAYSTTKGKRAEATKLASAVISAAEAGDASALKSSYAAFMKYTEEKSGYKGAGDGQGLGSEFDYKNRTPLGTVY 192
            +AG +AA AA        A  DGAKS AT SRARGIYG R+AAL DAV+KGD  AV AEKNAF L+ SGA  T+K K+A A K  +A+ +A    DA ALK +Y  +    +          GQG  +++D+K RT LGT+Y
Sbjct:   35 AAGQIAAGAAVIAGLPNLALADGAKSAATVSRARGIYGQRIAALEDAVSKGDFGAVAAEKNAFILYNSGAI-TSKDKQAAAVKQTNAIFAAIRGKDAGALKKAYGDYKSAQDIAVIVVDKEKGQGYSNDYDFKTRTNLGTIY 175          
BLAST of mRNA_H-paniculata_contig16142.3541.1 vs. uniprot
Match: A0A7S2S7V4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7V4_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 5.050e-20
Identity = 77/177 (43.50%), Postives = 101/177 (57.06%), Query Frame = 0
Query:   31 RSMTMSSQ-----DQPMTRAEVLNTVFSAGAVAAVAAXXXXXXXFADGAKSRATQSRARGIYGGRVAALSDAVAKGDSAAVLAEKNAFQLFVSGAYSTT-----KGKRAEATKLASAVISAAEAGDASALKSSYAAFMKYTEEKSGYKGAGDG--QGLGSEFDYKNRTPL-GTVYQR 194
            RS+ MS++     D  +  A  L  VFS GA AA          FADGA S AT +RARG+YGGR+AALSD+V KGD  AV AEKNAF LF SG Y+       K K+  A    +++  A   GD + +KS+YA FMK  + + GY G      QG  +E+D+K + P  G++Y R
Sbjct:   40 RSVVMSAEGESRRDMLVKGAGALGVVFS-GASAA----------FADGAVSLATVARARGLYGGRIAALSDSVNKGDLEAVEAEKNAFILFNSGVYARNGPVDRKNKKV-AVAATNSLFDAVSKGDKAGVKSAYAEFMKVADIQPGYSGKDKDFTQGYSTEYDWKYKDPKKGSIYIR 204          
BLAST of mRNA_H-paniculata_contig16142.3541.1 vs. uniprot
Match: A0A7S2IG61_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IG61_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 8.650e-20
Identity = 61/127 (48.03%), Postives = 81/127 (63.78%), Query Frame = 0
Query:   71 ADGAKSRATQSRARGIYGGRVAALSDAVAKGDSAAVLAEKNAFQLFVSGAYSTTKGK--RAEATKLASAVISAAEAGDASALKSSYAAFMKYTEEKS-GYKGAGDGQGLGSEFDYKNRTPLGTVYQR 194
            ADGA S AT  RARGIYGGR+AAL  AVA GD  AV AEKNAF LF SGAY   K K  +A A +  +++ +A  + D++ALKS+Y +++   +  +     A  GQG  S++DY+ RT  G +Y R
Sbjct:   57 ADGAVSAATVGRARGIYGGRIAALEGAVASGDFGAVAAEKNAFILFNSGAYPGAKNKANKAAAIEGTNSIFAAIRSKDSAALKSAYKSYIAANDISALPAVDANSGQGYCSDYDYRVRTDAGAIYVR 183          
BLAST of mRNA_H-paniculata_contig16142.3541.1 vs. uniprot
Match: A0A448ZDN4_9STRA (PSII_Pbs31 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZDN4_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.380e-19
Identity = 73/145 (50.34%), Postives = 93/145 (64.14%), Query Frame = 0
Query:   54 AGAVAAVAAXXXXXXXFADGAKSRATQSRARGIYGGRVAALSDAVAKGDSAAVLAEKNAFQLFVSGAYSTTKGK--RAEATKLASAVISAAEAGDASALKSSYAAFMKYTEEKSGYKG--AGDGQGLGSEFDYKNRTPLGTVYQR 194
            AG  AA   XXXXXXX ADGA S AT  RA+  YG R+AAL DAV+KGD  AV AEKNAF L+ SGA+  TK K  +A A +  +A+ +A  + DA ALK++YAA+ K T E S Y    A  GQG  S++DY+ +T    ++ R
Sbjct:   40 AGIAAAAGXXXXXXXXLADGAVSAATIQRAKFQYGSRIAALKDAVSKGDFGAVAAEKNAFILYNSGAFPGTKNKDKKAAAIQGTNAIFAAIRSKDAGALKTAYAAYTK-TVELSDYAAISADQGQGYSSDYDYRVKTSQAAIWVR 183          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16142.3541.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JBE3_9PHAE1.740e-7065.98PSII_Pbs31 domain-containing protein n=2 Tax=Ectoc... [more]
A0A835ZH21_9STRA7.130e-2744.16Extrinsic protein in photosystem II n=1 Tax=Tribon... [more]
B8CC14_THAPS5.790e-2643.68PSII_Pbs31 domain-containing protein n=1 Tax=Thala... [more]
A0A7S0JLR9_9EUKA3.500e-2240.84Hypothetical protein n=1 Tax=Minchinia chitonis Ta... [more]
A0A1Z5JRZ4_FISSO3.770e-2240.10PSII_Pbs31 domain-containing protein n=2 Tax=Fistu... [more]
A0A7S2X8Z1_9EUKA5.130e-2250.30Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
K0R4S8_THAOC5.370e-2248.59PSII_Pbs31 domain-containing protein n=1 Tax=Thala... [more]
A0A7S2S7V4_9STRA5.050e-2043.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2IG61_9STRA8.650e-2048.03Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A448ZDN4_9STRA3.380e-1950.34PSII_Pbs31 domain-containing protein n=1 Tax=Pseud... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR040933Photosystem II Psb31 proteinPFAMPF18240PSII_Pbs31coord: 74..162
e-value: 2.5E-31
score: 107.9
NoneNo IPR availableGENE3D1.20.120.1740coord: 72..194
e-value: 9.4E-42
score: 144.2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..26
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 50..71
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 72..194
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..49
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..16
score: 0.587
NoneNo IPR availableTMHMMTMhelixcoord: 4..26
NoneNo IPR availableTMHMMTMhelixcoord: 47..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16142contigH-paniculata_contig16142:1828..4360 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16142.3541.1mRNA_H-paniculata_contig16142.3541.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig16142 913..4393 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig16142.3541.1 ID=prot_H-paniculata_contig16142.3541.1|Name=mRNA_H-paniculata_contig16142.3541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp
MKTVCVALALAGSASAFITPMANVRATAPARSMTMSSQDQPMTRAEVLNT
VFSAGAVAAVAAAAVPSAAFADGAKSRATQSRARGIYGGRVAALSDAVAK
GDSAAVLAEKNAFQLFVSGAYSTTKGKRAEATKLASAVISAAEAGDASAL
KSSYAAFMKYTEEKSGYKGAGDGQGLGSEFDYKNRTPLGTVYQR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040933PSII_Pbs31