prot_H-paniculata_contig1496.2947.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig1496.2947.1
Unique Name	prot_H-paniculata_contig1496.2947.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	228

Homology

[Close]

BLAST of mRNA_H-paniculata_contig1496.2947.1 vs. uniprot
Match: A0A6H5KVZ6_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVZ6_9PHAE)

HSP 1 Score: 305 bits (780), Expect = 2.040e-102
Identity = 151/195 (77.44%), Postives = 165/195 (84.62%), Query Frame = 0

Query:   37 GICSS----HHRERRTVLPAVSELVGASEETGGVFDPMGFATDEASLYRRRVAELKHGRVCMLATVGVIVQSFVHLPDPTRSAFSNTRPLGALFQVWRERPLILIVMVASMGIIELTVGREDYGGYDAEPGRLGEFWQKARPREPVLWRKRQLQELKHGRLATLAITGMLAQELVTHEGPVEQLLNGHINPFDHY 227
            GIC S    H +   T   AVSE+VGASEETGGVFDP+G ATDE SLYRRRVAELKHGRVCMLATVGV+VQSFV  PDP RSAFSNTRPLGALFQVWRERP+IL+ +VA MG+IELT+GREDYG  +AEPG+LGE WQ ARP +P LWR+RQLQELKHGRLA+L ITGMLAQELVTHEGPVEQLL G INPF  Y
Sbjct:   33 GICPSISRSHQQLPETCRYAVSEMVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGELWQTARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPFHEY 227

[Close]

BLAST of mRNA_H-paniculata_contig1496.2947.1 vs. uniprot
Match: D8LBT8_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT8_ECTSI)

HSP 1 Score: 295 bits (756), Expect = 1.370e-99
Identity = 141/172 (81.98%), Postives = 155/172 (90.12%), Query Frame = 0

Query:   56 LVGASEETGGVFDPMGFATDEASLYRRRVAELKHGRVCMLATVGVIVQSFVHLPDPTRSAFSNTRPLGALFQVWRERPLILIVMVASMGIIELTVGREDYGGYDAEPGRLGEFWQKARPREPVLWRKRQLQELKHGRLATLAITGMLAQELVTHEGPVEQLLNGHINPFDHY 227
            +VGASEETGGVFDP+G ATDE SLYRRRVAELKHGRVCMLATVGV+VQSFV  PDP RSAFSNTRPLGALFQVWRERP+IL+ +VA MG+IELT+GREDYG  +AEPG+LG+FWQ ARP +P LWR+RQLQELKHGRLA+L ITGMLAQELVTHEGPVEQLL G INPF  Y
Sbjct:    1 MVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGDFWQAARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPFHEY 172

[Close]

BLAST of mRNA_H-paniculata_contig1496.2947.1 vs. uniprot
Match: A0A835ZAI4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI4_9STRA)

HSP 1 Score: 185 bits (469), Expect = 2.210e-55
Identity = 92/173 (53.18%), Postives = 125/173 (72.25%), Query Frame = 0

Query:   52 AVSELVGASEETGGVFDPMGFATDEASLYRRRVAELKHGRVCMLATVGVIVQSFVHLPDPTRSAFSNTRPLGALFQVWRERPLILIVMVASMGIIELTVGREDYGGYDAEPGRLGEFWQKARPREPVLWRKRQLQELKHGRLATLAITGMLAQELVTHEGPVEQLLNGHINPF 224
            +V ++VG   ETGG+FDP+GF+ DEASL+RRR  ELKHGR+CMLAT GV+VQ++VHLPD   + FSN RP+GAL QV  +RP+  I ++ ++G++ELT G +DY   +  PG LG F    +P +     + QL+ELK+GRLA + I GML QE +T +GP+EQLL GH +PF
Sbjct:   42 SVEDMVGIDVETGGLFDPLGFSKDEASLFRRRAVELKHGRICMLATFGVLVQTYVHLPD---AVFSNPRPIGALLQVLDQRPVAAIQILLAIGLLELTAGAQDYA--NKAPGDLGRFGDAFKPDDAGELAELQLKELKNGRLAMMGIMGMLVQEGLTKQGPIEQLLVGHTSPF 209

[Close]

BLAST of mRNA_H-paniculata_contig1496.2947.1 vs. uniprot
Match: D5KBP8_ELYCH (Light harvesting complex protein 3 (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=D5KBP8_ELYCH)

HSP 1 Score: 173 bits (438), Expect = 1.240e-51
Identity = 84/149 (56.38%), Postives = 114/149 (76.51%), Query Frame = 0

Query:   67 FDPMGFATDEASLYRRRVAELKHGRVCMLATVGVIVQSFVHLPDPTRSAFSNTRPLGALFQVWRERPLILIVMVASMGIIELTVGREDYGGYDAEPGRLGEFWQKARPREPVLWRKRQLQELKHGRLATLAITGMLAQELVTHEGPVEQ 215
            +DP+GF+ DEASL+RRRV ELKHGR+CMLAT+GV VQ+ +HLPDP    FSN RP+GAL QV+ ERP+ +  ++ ++G IEL++G++DY   +  PG LG F   A+P +P+ W K QL+ELK+GRLA +AI GML QE +T +GP+EQ
Sbjct:    1 WDPLGFSKDEASLFRRRVVELKHGRICMLATLGVFVQNSIHLPDPV---FSNPRPIGALLQVFAERPIAIWQIILAIGAIELSIGKQDYE--NKAPGDLGSFGDFAKPSDPIEWEKVQLRELKNGRLAMMAIMGMLVQEGLTKQGPLEQ 144

[Close]

BLAST of mRNA_H-paniculata_contig1496.2947.1 vs. uniprot
Match: A0A6H5JT49_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT49_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 3.200e-51
Identity = 94/191 (49.21%), Postives = 122/191 (63.87%), Query Frame = 0

Query:   39 CSSHHRERRT----VLPAVSELVGASEETGGVFDPMGFATDEASLYRRRVAELKHGRVCMLATVGVIVQSFVHLPDPTRSAFSN-TRPLGALFQVWRERPLILIVMVASMGIIELTVGREDYGGYDAEPGRLGEFWQKARPREPVLWRKRQLQELKHGRLATLAITGMLAQELVTHEGPVEQLLNGHINPF 224
            C S  R R +    +  ++ E++GA  E+GG+FDP+GF+ DE SL+RRR  ELKHGRV MLA  G++VQSFVH P       SN  RPL  L  +       +++ +   G++ELT+G++DY   D  PG LGEF   A+P +   W K Q+ ELKHGRLA L + G L QELVT EGPVEQLLNG+I PF
Sbjct:   45 CHSSTRSRSSSAARIEMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVHFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGTGVVELTIGKQDY--VDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPF 233

[Close]

BLAST of mRNA_H-paniculata_contig1496.2947.1 vs. uniprot
Match: W7TRI0_9STRA (Light-harvesting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRI0_9STRA)

HSP 1 Score: 170 bits (431), Expect = 3.430e-50
Identity = 86/173 (49.71%), Postives = 120/173 (69.36%), Query Frame = 0

Query:   52 AVSELVGASEETGGVFDPMGFATDEASLYRRRVAELKHGRVCMLATVGVIVQSFVHLPDPTRSAFSNTRPLGALFQVWRERPLILIVMVASMGIIELTVGREDYGGYDAEPGRLGEFWQKARPREPVLWRKRQLQELKHGRLATLAITGMLAQELVTHEGPVEQLLNGHINPF 224
            + S+++G   ETGG+FDP+GF+ DE SLY+ R  ELKHGRV MLA +G +VQS+ HLPD     FSN RPLGAL Q+  ERPL ++ +V ++ +IE+T G++D    +  PG+LG F +  +P         QL+ELK+GRLA +AI G   QEL+T +GP+EQ+ +GHI+PF
Sbjct:    2 SASDMIGIDVETGGLFDPLGFSKDEQSLYKYRQVELKHGRVAMLACLGTLVQSYTHLPD---DVFSNPRPLGALGQLLSERPLAILQIVIAITLIEVTSGKQDP---ELAPGQLGRFGEAFKPEGEAEMAAVQLKELKNGRLAMVAIIGQWVQELLTGQGPIEQITSGHISPF 168

[Close]

BLAST of mRNA_H-paniculata_contig1496.2947.1 vs. uniprot
Match: W7U405_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U405_9STRA)

HSP 1 Score: 170 bits (431), Expect = 8.910e-50
Identity = 92/178 (51.69%), Postives = 120/178 (67.42%), Query Frame = 0

Query:   47 RTVLPAVSELVGASEETGGVFDPMGFATDEASLYRRRVAELKHGRVCMLATVGVIVQSFVHLPDPTRSAFSNTRPLGALFQVWRERPLILIVMVASMGIIELTVGREDYGGYDAEPGRLGEFWQKARPREPVLWRKRQLQELKHGRLATLAITGMLAQELVTHEGPVEQLLNGHINPF 224
            R+V  AV+E++G+  ET GVFDP+G A DEASLYR R+ ELKHGRV MLA +G +VQSF HLPD     FSN RPL AL QV+ ERP+    +  ++G IELT+G++D    +  PG +G F     P +   +   QL+ELK+GRLA +AI G   QE +T +GP+EQLL GH +PF
Sbjct:   28 RSVRMAVNEMIGSDVETNGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPD---EVFSNPRPLAALAQVYSERPVAFWQIFLAIGAIELTIGKQDTA--NRAPGDVG-FGAAFIPDDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHFSPF 199

[Close]

BLAST of mRNA_H-paniculata_contig1496.2947.1 vs. uniprot
Match: A0A835ZIK7_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK7_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.340e-47
Identity = 84/173 (48.55%), Postives = 116/173 (67.05%), Query Frame = 0

Query:   52 AVSELVGASEETGGVFDPMGFATDEASLYRRRVAELKHGRVCMLATVGVIVQSFVHLPDPTRSAFSNTRPLGALFQVWRERPLILIVMVASMGIIELTVGREDYGGYDAEPGRLGEFWQKARPREPVLWRKRQLQELKHGRLATLAITGMLAQELVTHEGPVEQLLNGHINPF 224
            AV +++GA  ET GV+DP+  + D+ +L++ R  ELKHGRV MLAT+GV+VQSF HLPDP    FSN RPL AL Q+  ERP+    +  ++G  EL++G++DY   +  PG +  F    +P +   W K QL+ELK+GRLA +A  GM  QE +T +GP+EQL  GHI+PF
Sbjct:   14 AVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDPV---FSNPRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYE--NKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPF 181

[Close]

BLAST of mRNA_H-paniculata_contig1496.2947.1 vs. uniprot
Match: A0A0G4GDB0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GDB0_VITBC)

HSP 1 Score: 161 bits (407), Expect = 4.700e-46
Identity = 93/184 (50.54%), Postives = 120/184 (65.22%), Query Frame = 0

Query:   44 RERRTVLP--AVSELVGASEETGGVFDPMGFATDEASLYRRRVAELKHGRVCMLATVGVIVQSF-VHLPDPTRSAFSNTRPLGALFQVWRERPLILIVMVASMGIIELTVGREDYGGYDAEPGRLGEFWQKARPREPVLWRKRQLQELKHGRLATLAITGMLAQELVTHEGPVEQLLNGHINPF 224
            R  R+  P  +V E++GA  ETGGVFDP+ F+ DEASL+RRR  ELKHGR+ MLA +G  VQS  VHLPDP    FS  RPL AL +V  ERP     +VA++  IEL  GR+DY   +  PG LG F    +  +P  +RK QL+ELK+GRLA + I GM+ QE +T +   EQ+ +G+INPF
Sbjct:   35 RALRSTTPKMSVEEMIGADVETGGVFDPLKFSEDEASLFRRRAVELKHGRIAMLACLGYFVQSAGVHLPDPV---FSEPRPLSALTKVLTERPWAAAQIVAAIAAIELGPGRQDYE--NKAPGDLGYFGDSFKNSDPEEFRKDQLRELKNGRLAMIGIMGMMVQEGLTGQSVWEQIGSGNINPF 213

[Close]

BLAST of mRNA_H-paniculata_contig1496.2947.1 vs. uniprot
Match: A0A0G4FFG9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FFG9_VITBC)

HSP 1 Score: 160 bits (406), Expect = 6.840e-46
Identity = 84/177 (47.46%), Postives = 118/177 (66.67%), Query Frame = 0

Query:   48 TVLPAVSELVGASEETGGVFDPMGFATDEASLYRRRVAELKHGRVCMLATVGVIVQSFVHLPDPTRSAFSNTRPLGALFQVWRERPLILIVMVASMGIIELTVGREDYGGYDAEPGRLGEFWQKARPREPVLWRKRQLQELKHGRLATLAITGMLAQELVTHEGPVEQLLNGHINPF 224
            T + AV +L GA  ETGGV+DP+G + +E +L   R AELKHGRVCM+A +GVIVQ++  LPDP    F+N RPL A+ QVW++RP  +I ++ ++G  EL   R+     +  PG L  F    RPR+   + + Q +ELK+GRLA + I+GML QE +T +GP+EQ+  GHI+PF
Sbjct:   38 TTMGAVDQLAGADVETGGVWDPLGLSQNEDALSLYRAAELKHGRVCMMAVLGVIVQTYFQLPDPV---FNNPRPLEAIVQVWQQRPEAIIQILLAIGATELYFLRQSP---EDPPGSLQNFGAAFRPRDEAKFEELQRKELKNGRLAMIGISGMLVQEALTGQGPLEQIQVGHISPF 208

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig1496.2947.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig1496.2947.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KVZ6_9PHAE	2.040e-102	77.44	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D8LBT8_ECTSI	1.370e-99	81.98	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A835ZAI4_9STRA	2.210e-55	53.18	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
D5KBP8_ELYCH	1.240e-51	56.38	Light harvesting complex protein 3 (Fragment) n=4 ...	[more]
A0A6H5JT49_9PHAE	3.200e-51	49.21	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
W7TRI0_9STRA	3.430e-50	49.71	Light-harvesting protein n=1 Tax=Nannochloropsis g...	[more]
W7U405_9STRA	8.910e-50	51.69	Light-harvesting protein n=2 Tax=Monodopsidaceae T...	[more]
A0A835ZIK7_9STRA	1.340e-47	48.55	Chlorophyll a/b-binding protein domain-containing ...	[more]
A0A0G4GDB0_VITBC	4.700e-46	50.54	Uncharacterized protein n=2 Tax=Vitrella brassicaf...	[more]
A0A0G4FFG9_VITBC	6.840e-46	47.46	Uncharacterized protein n=2 Tax=Vitrella brassicaf...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 51..227 e-value: 2.1E-33 score: 117.7
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 55..205 e-value: 1.6E-25 score: 90.5
None	No IPR available	PANTHER	PTHR21649:SF7	CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC	coord: 56..107
None	No IPR available	PANTHER	PTHR21649:SF7	CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC	coord: 67..217
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 64..225
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 67..217 coord: 56..107

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig1496	contig	H-paniculata_contig1496:17948..23025 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig1496.2947.1	mRNA_H-paniculata_contig1496.2947.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig1496 16677..23139 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig1496.2947.1 ID=prot_H-paniculata_contig1496.2947.1|Name=mRNA_H-paniculata_contig1496.2947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=228bp
MLAFVGVNVSPHALATQGLSSPNSALWTSETGARTAGICSSHHRERRTVL
PAVSELVGASEETGGVFDPMGFATDEASLYRRRVAELKHGRVCMLATVGV
IVQSFVHLPDPTRSAFSNTRPLGALFQVWRERPLILIVMVASMGIIELTV
GREDYGGYDAEPGRLGEFWQKARPREPVLWRKRQLQELKHGRLATLAITG
MLAQELVTHEGPVEQLLNGHINPFDHY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln