prot_H-paniculata_contig1493.2934.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1493.2934.1
Unique Nameprot_H-paniculata_contig1493.2934.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length1304
Homology
BLAST of mRNA_H-paniculata_contig1493.2934.1 vs. uniprot
Match: A0A6H5L823_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L823_9PHAE)

HSP 1 Score: 248 bits (632), Expect = 9.930e-64
Identity = 215/624 (34.46%), Postives = 293/624 (46.96%), Query Frame = 0
Query:  207 LQDVILLLVSEVSSSLSKSPGKTWAKILSQNYTSSVVGLRLLGNLGGVHL--SKRPLKAR----------PIRAGHRALKGLAEGERNYEVDPETKVFVYPDAAAVQGEAVSVSKLSPLKGSEVAPNWYKPTLYRVPASFRAALEEVTGELAELPGSELQRLVCNRHAYRSLELLLEMH------TTSNSAPVAGPAESPPLARLKQESPAMKLVAQALEWQDEVRERKSXXXXXXXXXXXXXXXXXXEIVYAMAGDKWGSRFLLAVIRLTPQPFFLELYQRCFQDRPLQSSKIGVSKDFKLRFLQELFRRVQDSNLATNIVMAVIDHASVLLAYGHVDMLSRAAQLCVRQGLGADTQANLLEAIAQAVQQGLDRESVTLAVDSGKVTEQGAHALEGLSDQVGCDRGAENDKDNSGKTRERRLCREVVLSLL-----GQGSSTS---NIDGMYVVHWLLQFEKPVVESVLTAVAELPHDVLAAVVRDEVGCQCVLESVLDAA--RWG--PNGGMRLAAARQARSRIVQAFIGHLVDLACDRVAWTFVVQCF------------------HDTALVQQTW----MVNELATRGHEAMSRMEGCPSGRRVLAECMVNMFIQSRDVW 778
            +QD++L LVSE+S +        WA++ + + + S VG   L  LGG+ +   KR  ++R          P R G R     + G                 +   +G+A +    +P   SE    W  P  +RVP SF AAL E+T EL  LP SELQ L C       L +LL +H      T  ++   +  AE+  L  LK ES AMK+V + LEW DE R                      ++VYA++G+   S FL AV+ L+P+ FF ELY RCF+   L+  + GVS       +Q   +R  D  LA  +V A+ D+AS LL      +L RAAQ CVR  L   TQA +L+ IA AVQ G        A+      E    A++        D+ AE            +  R  V +LL     G+G       N+ G  +V   L F+ PV   VL AVA LP DVLAAV RD +G +C+L+ +L+AA  R G    GG +   A +AR  I++AF GHLV +ACDRVAW  +V+CF                  H    ++Q      +  ELA  G ++ SRM G PSGR VL ECMV  F +S   W
Sbjct:  171 MQDILLALVSELSGA--------WAELFA-DISGSHVGRGFLQVLGGMPILSEKRGRQSRHAHSIGTAVGPARMGGRGNNNHSNGS----------------SVGAKGKASA----TPSVDSEALEKWSTPYKHRVPRSFVAALGEITSELEALPASELQTLACGTFGCPLLVMLLRVHGNLATATREDNPGSSSAAETMVLPCLKHESMAMKIVKKVLEWDDEERSA--------------------QVVYAISGENTASHFLEAVLWLSPRSFFEELYHRCFESNLLEFCEHGVSNFL----IQAALQRADDKALAEKMVEAISDNASELLKARRAGVLWRAAQACVRLRLKPKTQAKILQDIALAVQAG----HTGSALPPPPTGESNPKAVQ--------DKQAEASDSPPSIADAFKAARAWVPALLSPRLPGEGGLDRLFLNVPGARIVQNALLFDPPVAAPVLKAVAALPDDVLAAVARDNMGSRCLLDPILEAAGARGGGXXKGGAKNKPAEEARRAILRAFKGHLVAMACDRVAWHILVKCFRGVDMKEKRRDKNRTVQIHIVGSIRQQSSAGAIAEELAGGGEQSWSRMSGYPSGRSVLTECMVERFSRSPHEW 729          
BLAST of mRNA_H-paniculata_contig1493.2934.1 vs. uniprot
Match: D8LQM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQM4_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 1.130e-57
Identity = 190/546 (34.80%), Postives = 263/546 (48.17%), Query Frame = 0
Query:  207 LQDVILLLVSEVSSSLSKSPGKTWAKILSQNYTSSVVGLRLLGNLGGVHLSKRPLKARPIRAGHRALKGLAEGERNYEVDPETKVFVYPDAAAVQGEAVSVSKLSPLKGSEVAPNWYKPTLYRVPASFRAALEEVTGELAELPGSELQRLVCNRHAYRSLELLLEMHTTSNSAPVAGPAESPPLARLKQESPAMKLVAQALEWQDEVRERKSXXXXXXXXXXXXXXXXXXEIVYAMAGDKWGSRFLLAVIRLTPQPFFLELYQRCFQDRPLQSSKIGVSKDFKLRFLQELFRRVQDSNLATNIVMAVIDHASVLLAYGHVDMLSRAAQLCVRQGLGADTQANLLEAIAQAVQQGLDRESV--TLAVDSGKVTEQGAHALEGLSDQVGCDRGAENDKDNS--GKTRERRLCREVVLS--LLGQGSSTS---NIDGMYVVHWLLQFEKPVVESVLTAVAELPHDVLAAVVRDEVGCQCVLESVLDAARWGPNGGM------RLAAARQARSRIVQAFIGHLVDLACDRVAWTFVVQCFHDTALVQQTW 737
            +QD++L LVSE+S +        WA++ + + + S VG   L  LGG+ +     + R  R  H    G A G                 +   +G+    S  SP    E    W  P  +RVP SF AAL EVT EL  LP SELQ L C       L +LL +H   N A  +  AE+  L  L+ ES AMK+V + LEW D+ R                      ++VYA++G+   S FL AV+ L+P+ FF ELY RCF+ + L+  + GVS       +Q   +R  D  LA  +V A+ D+AS LL      +L RAAQ CVR  L   TQA +L+ IA AVQ G    +   T   +S    EQ              D+ A +D   S     +  R     +LS  L G+G       N+ G  ++   L F+ PV   VL AVA LP DVLAAV RD +G +C+L+ +L+AA  G  GG       +   A +AR  I++AF GHLV +ACDRVAW  +++CF    + ++ W
Sbjct:  172 MQDILLSLVSELSGA--------WAELFA-DISGSHVGRGFLQVLGGMPVLSEK-RGRQSRHAHSI--GTAVGPARMGGRSNNNNHGNGSSVGAEGK----SSASPAVDPEALEKWSTPYKHRVPRSFVAALGEVTSELEALPASELQTLACGTFGCPLLVMLLRVH--GNLATASSAAETMVLPCLEHESMAMKIVKKVLEWDDQERSA--------------------QVVYAISGENTASHFLEAVLWLSPRSFFEELYHRCFESKLLEFCEHGVSNFL----IQAALQRADDKALAEKMVEAISDNASELLKARRAGVLWRAAQACVRLRLKPKTQAKILQDIALAVQAGHTGSAPPPTPTDESNPKAEQ--------------DKAAASDSPPSIADAFKAARTWVPALLSPRLPGEGGLDRLFLNVPGARIMQNALLFDPPVAAPVLKAVAALPDDVLAAVARDNMGSRCLLDPILEAA--GARGGXXXXXXXKNKPAEEARRAILRAFKGHLVAMACDRVAWHILLKCFRGVDMKEKRW 659          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1493.2934.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L823_9PHAE9.930e-6434.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQM4_ECTSI1.130e-5734.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 12..32
NoneNo IPR availableCOILSCoilCoilcoord: 862..889
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 22..225
e-value: 1.8E-6
score: 29.1
IPR040000Nucleolar protein 9PANTHERPTHR13102PROTEIN C14ORF21coord: 36..877
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 49..120

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1493contigH-paniculata_contig1493:1698..8732 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1493.2934.1mRNA_H-paniculata_contig1493.2934.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1493 1698..8965 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1493.2934.1 ID=prot_H-paniculata_contig1493.2934.1|Name=mRNA_H-paniculata_contig1493.2934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1304bp
MPERMNHPRPVAAEKLSLLSQLEAELEKLDTNQHDRAELVGGDEEMTIID
DLLEKLKDQVAGILQDRTGSLIVENIASRLSPGQLAVILGGCRGYVDSLA
SNKLSSHVLEILLRSASEAIEAELGATGESNGVANARERNGFVGQAATAR
SGDSKLTAEEWPPKLYVGAGFYVTAGQGRRCKDRSELSSATHSHTADTAR
QTTLQVLQDVILLLVSEVSSSLSKSPGKTWAKILSQNYTSSVVGLRLLGN
LGGVHLSKRPLKARPIRAGHRALKGLAEGERNYEVDPETKVFVYPDAAAV
QGEAVSVSKLSPLKGSEVAPNWYKPTLYRVPASFRAALEEVTGELAELPG
SELQRLVCNRHAYRSLELLLEMHTTSNSAPVAGPAESPPLARLKQESPAM
KLVAQALEWQDEVRERKSEDDDKERSSDDEDAGRSSEIVYAMAGDKWGSR
FLLAVIRLTPQPFFLELYQRCFQDRPLQSSKIGVSKDFKLRFLQELFRRV
QDSNLATNIVMAVIDHASVLLAYGHVDMLSRAAQLCVRQGLGADTQANLL
EAIAQAVQQGLDRESVTLAVDSGKVTEQGAHALEGLSDQVGCDRGAENDK
DNSGKTRERRLCREVVLSLLGQGSSTSNIDGMYVVHWLLQFEKPVVESVL
TAVAELPHDVLAAVVRDEVGCQCVLESVLDAARWGPNGGMRLAAARQARS
RIVQAFIGHLVDLACDRVAWTFVVQCFHDTALVQQTWMVNELATRGHEAM
SRMEGCPSGRRVLAECMVNMFIQSRDVWNAKMIARHKMQIKINKERKSEM
GAKVEQSKKKKRQKACADLPAAEAEPVPSPALAGTSATNSKACFPPVENE
AAGPERRVSKKARRREKKARKAEKKARKAANRAKRAEQQKCLSGKRKRSG
KGKAPTPPSTSKKSRKRKHPLDHTAPATNAAAAVSAPGESLDRGVVEADA
ALSTPRPKKSRERRKLKLQHDTKESEVPKADAALSTPEPETSREQRKLRR
AKLRHDMKESEVPEVDAALSTPEPETSREQRKARRAKLRHDTKESEVPEA
DAALSTPEPETSREQRKLRRAKLRHDTKESEVPEAGAALSTPEPETSREQ
RKAKRVKVQHALNESGGAQVVIVGNKGSLTTTVAAGNGQHLEGTSIMLSE
GMSGSGAGGACLRELDHGHLSHFPEKAGRREGSPSLTESAAAATLTVAKQ
DTVTVALTMATKEAVAVAPTAATRKIIAIAPTVATKETVPIAPTVATKET
APVAPTVATKETISVAPTVATKETVPIAPTVATKETVPVAPTVATKETVP
IAPT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR040000NOP9
IPR016024ARM-type_fold