prot_H-paniculata_contig14813.2866.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig14813.2866.1
Unique Nameprot_H-paniculata_contig14813.2866.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length795
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14813.2866.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 695..728
e-value: 2.7E-5
score: 22.0
coord: 479..512
e-value: 3.4E-8
score: 31.2
coord: 548..582
e-value: 6.8E-8
score: 30.2
coord: 731..759
e-value: 1.3E-4
score: 20.0
coord: 410..442
e-value: 1.4E-4
score: 19.8
coord: 584..617
e-value: 2.3E-8
score: 31.7
coord: 515..545
e-value: 5.1E-5
score: 21.2
coord: 269..303
e-value: 9.4E-8
score: 29.8
coord: 306..338
e-value: 9.2E-5
score: 20.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 479..508
e-value: 8.3E-6
score: 25.7
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 716..779
e-value: 5.2E-6
score: 26.5
coord: 292..348
e-value: 8.3E-11
score: 41.8
coord: 395..453
e-value: 5.4E-7
score: 29.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 546..580
score: 11.444
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 770..794
score: 5.294
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 693..727
score: 9.734
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 728..762
score: 9.92
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 476..510
score: 12.014
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 372..406
score: 7.805
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 658..692
score: 10.106
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 267..301
score: 12.189
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 302..336
score: 10.183
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 442..472
score: 7.695
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 337..371
score: 9.92
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 407..441
score: 8.484
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 581..615
score: 13.066
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 511..545
score: 11.762
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 616..650
score: 9.964
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 648..792
e-value: 1.2E-31
score: 112.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 575..647
e-value: 1.3E-16
score: 62.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 206..351
e-value: 2.2E-27
score: 97.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 476..574
e-value: 1.4E-29
score: 105.6
coord: 352..475
e-value: 2.3E-23
score: 85.2
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 410..644
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 515..687
e-value: 8.7E-14
score: 51.4
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 247..360
coord: 351..470
coord: 480..645
coord: 614..783

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14813contigH-paniculata_contig14813:674..5026 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14813.2866.1mRNA_H-paniculata_contig14813.2866.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig14813 597..5051 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig14813.2866.1 ID=prot_H-paniculata_contig14813.2866.1|Name=mRNA_H-paniculata_contig14813.2866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=795bp
MLVIIPCKFAQRASSSSRKCIAGRKLVDTTTAAAGAATARGGDGANSNPS
IHGLASGCTRAASFVAPARVPTTAGELSESPQQHAPVPWVVQHNSNSNGH
AGSGGGRRSGGGGGGGGGGADSSNFSSSSANRRGWWTRNFSYSNAEPEAV
VPNSNDSGLPPPENLAAAGGAGGAGAGAAAVAAAAVAAAASPPRAPKWGG
AHNERQRQAQQRVRRRRQIIPESEGVERSLEEAKQFTRHVTDFGMRRNWG
SILRLLAAAEQDGKSINLIMYNACISGLAKCRRWEEAIETLERMAAKGVA
PDVTGFTAAITACRNAKNWEMALQLMEEMRSVGVTPNAWTYHTTIQACAS
VGRVKEATSILTQMGEAGLKLTEHSFVCALDACRVAGNSEASEGLLRQMR
ALNIRPKVESYNMCMSAALTEKNWRRAVGILDEMEEYKVSPDFRSYTTAM
SACMSAGEVEMPLVLLDRMRRQSIANPWAYNICVNACSKAGNWERAVGLL
EDMRTAGVPPDAVSYPTAMDACVKAGQYDHALRLLEQMAADGLAPQYYSF
NIALNACSKAGLVDHALELLERMDKEGLPPDTLSYNSAISACARRGDWER
SLRLMRRMVESGLVPNVVTYTAAIGACDESGRWELAVELLDEMLSGGGEG
GARAIQPNEKAFAAAMGACKNGGRTDRALEVFEKLRQCGIQPGIVAYTAA
IDSCGLTGQWETALGLMAEMLAVGVEPNLLTYNAAVRACVRGRRWDLGMQ
LHRDMKKAGSGEDRAACKPDVVTFNALIRGLVPGTLVDDEWKRC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long