prot_H-paniculata_contig1473.2824.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1473.2824.1
Unique Nameprot_H-paniculata_contig1473.2824.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length190
Homology
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BLAST of mRNA_H-paniculata_contig1473.2824.1 vs. uniprot
Match: D7FXD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD8_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 9.080e-39
Identity = 69/141 (48.94%), Postives = 98/141 (69.50%), Query Frame = 0 
Query:   46 EHARSMALLGVIMQVDTFLAGFLLFTLTGERNADDLEADERVQVILQTVTFGVFLSAIIHTAVLMMSTGWKYTLNWSDPVWPGVTSAVGLGLLLVTVADAVLIELRPVDDLDDPDYWYIVLLGLLLPVVFSAVVVSFQMCL 186
            +H RS+ LL  I+QVDT LAGFL+ ++ G+ +    + +E+VQ++LQ VT  VFL+AI HT VLM+ TGW+YTL W DP++P   SAVG+ LL +T+ADA+LI LRP +DL    YW I++ GL+ P+  +    + QM L
Sbjct:   25 QHIRSLDLLKAIVQVDTILAGFLVLSVVGKNHEQITKDEEKVQMVLQVVTASVFLAAIAHTVVLMVCTGWRYTLAWYDPLFPAGFSAVGMFLLYLTIADAILIRLRPQEDLHTVGYWMIIIFGLMCPMALAGPTATLQMIL 165
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BLAST of mRNA_H-paniculata_contig1473.2824.1 vs. uniprot
Match: A0A6H5JJM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM3_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 6.800e-18
Identity = 56/127 (44.09%), Postives = 76/127 (59.84%), Query Frame = 0 
Query:   47 HARSMALLGVIMQVDTFLAGFLLFTLTGERNADD-LEADERVQVILQTVTFGVFLSAIIHTAVLMMSTGWKYTLNWSDPVWPGVTSAVGLGLLLVTVADAVLIELRPV---DDLDDPDYWYIVLLGL 169
            H  ++A +  I +VD F+AGFLLF+LTG +  D  L  +E +Q++ QT  FGVFL+A I T +  + TG +Y L   D + P   S +G  LLL++VA+AV IEL      DD D   YW  V LGL
Sbjct:  279 HELTLAKMQTIREVDIFMAGFLLFSLTGRQAVDTGLTDEEELQIVFQTCAFGVFLAATILTGMCTLCTGCRYALTSKDLIVPFGLSVLGFVLLLISVAEAVHIELGDGFYHDDHDHDKYWVTVGLGL 405
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1473.2824.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXD8_ECTSI9.080e-3948.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJM3_9PHAE6.800e-1844.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..50
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 114..124
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 71..89
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 125..148
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 160..182
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 149..159
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 51..70
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 183..189
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 90..113
NoneNo IPR availableTMHMMTMhelixcoord: 161..183
NoneNo IPR availableTMHMMTMhelixcoord: 52..74
NoneNo IPR availableTMHMMTMhelixcoord: 124..146
NoneNo IPR availableTMHMMTMhelixcoord: 89..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1473contigH-paniculata_contig1473:20297..21958 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1473.2824.1mRNA_H-paniculata_contig1473.2824.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1473 8530..23571 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1473.2824.1 ID=prot_H-paniculata_contig1473.2824.1|Name=mRNA_H-paniculata_contig1473.2824.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp
MVKWSEISPFSVLRRTESPAHDADVSIMTGTSHKRIRYDVHTDKEEHARS
MALLGVIMQVDTFLAGFLLFTLTGERNADDLEADERVQVILQTVTFGVFL
SAIIHTAVLMMSTGWKYTLNWSDPVWPGVTSAVGLGLLLVTVADAVLIEL
RPVDDLDDPDYWYIVLLGLLLPVVFSAVVVSFQMCLPSV*
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