prot_H-paniculata_contig14269.2587.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig14269.2587.1
Unique Nameprot_H-paniculata_contig14269.2587.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length245
Homology
BLAST of mRNA_H-paniculata_contig14269.2587.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.850e-19
Identity = 70/193 (36.27%), Postives = 97/193 (50.26%), Query Frame = 0
Query:   56 DDYTRFKVVKFVKNKSDTTAALSSLIADYI--TLPRNVDQLYQDGKPREFEGKFQRELDRLGITHEHTSPDTPQYNGVTERSLGLLRENSIA----LLEDFDVINVKREMLWAQAMLFTCDVTNKSVKMSTEGEKSPYELWNGKAPTPDHLQQF--GTIGDARKTAREHKMASEEENCVFMGIPRNFPMVPSA 240
            DD TR+  V F+K+KSD  AA    +ADY   T+P  V     DG   EF+G+F     R GI  E T P+TP+YNGV ER+LGLL ++++A      E F    V    LWA+A+   C   N +      G KSP EL++G  P       F    +  +R+ AR    A ++     +G+P   P+  SA
Sbjct:  221 DDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGG-EFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPG-LWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPVGSTHPFLKPLVFKSRRKARSQPRARKDGT---LGLPTITPVTASA 408          
BLAST of mRNA_H-paniculata_contig14269.2587.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 9.730e-19
Identity = 58/179 (32.40%), Postives = 89/179 (49.72%), Query Frame = 0
Query:   56 DDYTRFKVVKFVKNKSDTTAALSSLIADYIT--LPRNVDQLYQDGKPREFEGKFQRELDRLGITHEHTSPDTPQYNGVTERSLGLLRENSIALLEDFDVINV---KREMLWAQAMLFTCDVTNKSVKMSTEGEKSPYELWNGKAPTPDHLQQFGTIGDARKTAREHKMASEEENCVFMG 229
            DDYTR+  V F+K+KSD   A    +A+      P +V  +  D     FEG+F R   +  I  E T   +P+YNGV ER+LGL+++ ++A       +         LWA+A+ ++C+  N +   S   +KSPYE+W+G  P P     F       K  R HK   + + C ++G
Sbjct:  760 DDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPA-VYKVKRTHKSEPKAQKCFYLG 937          
BLAST of mRNA_H-paniculata_contig14269.2587.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 9.800e-19
Identity = 58/179 (32.40%), Postives = 89/179 (49.72%), Query Frame = 0
Query:   56 DDYTRFKVVKFVKNKSDTTAALSSLIADYIT--LPRNVDQLYQDGKPREFEGKFQRELDRLGITHEHTSPDTPQYNGVTERSLGLLRENSIALLEDFDVINV---KREMLWAQAMLFTCDVTNKSVKMSTEGEKSPYELWNGKAPTPDHLQQFGTIGDARKTAREHKMASEEENCVFMG 229
            DDYTR+  V F+K+KSD   A    +A+      P +V  +  D     FEG+F R   +  I  E T   +P+YNGV ER+LGL+++ ++A       +         LWA+A+ ++C+  N +   S   +KSPYE+W+G  P P     F       K  R HK   + + C ++G
Sbjct:  595 DDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPA-VYKVKRTHKSEPKAQKCFYLG 772          
BLAST of mRNA_H-paniculata_contig14269.2587.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 9.850e-19
Identity = 58/179 (32.40%), Postives = 89/179 (49.72%), Query Frame = 0
Query:   56 DDYTRFKVVKFVKNKSDTTAALSSLIADYIT--LPRNVDQLYQDGKPREFEGKFQRELDRLGITHEHTSPDTPQYNGVTERSLGLLRENSIALLEDFDVINV---KREMLWAQAMLFTCDVTNKSVKMSTEGEKSPYELWNGKAPTPDHLQQFGTIGDARKTAREHKMASEEENCVFMG 229
            DDYTR+  V F+K+KSD   A    +A+      P +V  +  D     FEG+F R   +  I  E T   +P+YNGV ER+LGL+++ ++A       +         LWA+A+ ++C+  N +   S   +KSPYE+W+G  P P     F       K  R HK   + + C ++G
Sbjct:  608 DDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPA-VYKVKRTHKSEPKAQKCFYLG 785          
BLAST of mRNA_H-paniculata_contig14269.2587.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 9.900e-19
Identity = 58/179 (32.40%), Postives = 89/179 (49.72%), Query Frame = 0
Query:   56 DDYTRFKVVKFVKNKSDTTAALSSLIADYIT--LPRNVDQLYQDGKPREFEGKFQRELDRLGITHEHTSPDTPQYNGVTERSLGLLRENSIALLEDFDVINV---KREMLWAQAMLFTCDVTNKSVKMSTEGEKSPYELWNGKAPTPDHLQQFGTIGDARKTAREHKMASEEENCVFMG 229
            DDYTR+  V F+K+KSD   A    +A+      P +V  +  D     FEG+F R   +  I  E T   +P+YNGV ER+LGL+++ ++A       +         LWA+A+ ++C+  N +   S   +KSPYE+W+G  P P     F       K  R HK   + + C ++G
Sbjct:  751 DDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPA-VYKVKRTHKSEPKAQKCFYLG 928          
BLAST of mRNA_H-paniculata_contig14269.2587.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.140e-18
Identity = 58/179 (32.40%), Postives = 87/179 (48.60%), Query Frame = 0
Query:   56 DDYTRFKVVKFVKNKSDTTAALSSLIADYIT--LPRNVDQLYQDGKPREFEGKFQRELDRLGITHEHTSPDTPQYNGVTERSLGLLRENSIALLEDFDVINV---KREMLWAQAMLFTCDVTNKSVKMSTEGEKSPYELWNGKAPTPDHLQQFGTIGDARKTAREHKMASEEENCVFMG 229
            DDYTR+  V F+K+KSD   A    + +      P +V  +  D     FEG+F R   +  I  E T   +P+YNGV ER+LGL+++ +IA       +         LWA+A+ ++C+  N +   S   +KSPYE+W+G  P P     F       K  R HK     + C ++G
Sbjct:  393 DDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPA-VYKVKRTHKSEPTAQKCFYLG 570          
BLAST of mRNA_H-paniculata_contig14269.2587.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 3.610e-17
Identity = 56/179 (31.28%), Postives = 86/179 (48.04%), Query Frame = 0
Query:   56 DDYTRFKVVKFVKNKSDTTAALSSLIADYIT--LPRNVDQLYQDGKPREFEGKFQRELDRLGITHEHTSPDTPQYNGVTERSLGLLRENSIALLEDFDVI---NVKREMLWAQAMLFTCDVTNKSVKMSTEGEKSPYELWNGKAPTPDHLQQFGTIGDARKTAREHKMASEEENCVFMG 229
            D YTR+  V F+K+KSD   A    +A+      P +V  +  D     FEG+F R   +  I  E T   +P+YNGV ER+LGL+++ ++A       +          WA+A+ + C+  N +   S   +KSPYE+W+G  P P     F       K  R HK   + + C ++G
Sbjct:  621 DVYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGTPNYPSFWAEAIAWACNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPA-VYKVKRTHKSEPKAQKCFYLG 798          
BLAST of mRNA_H-paniculata_contig14269.2587.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 4.070e-17
Identity = 59/142 (41.55%), Postives = 78/142 (54.93%), Query Frame = 0
Query:   56 DDYTRFKVVKFVKNKSDTTAALSSLIADYI--TLPRNVDQLYQDGKPREFEGKFQRELDRLGITHEHTSPDTPQYNGVTERSLGLLRENSIA----LLEDFDVINVKREMLWAQAMLFTCDVTNKSVKMSTEGEKSPYELWN 191
            DD TR+  V F+K+KSD  AA    +ADY   T+P  V     DG   EF+G+F     R GI  E T P+TP+YNGV ER+LGLL ++++A      E F    V    LWA+A+   C   N +      G KSPYEL++
Sbjct:   17 DDCTRWTRVFFLKHKSDAAAAFEPYLADYRAETVPCEVFVARTDGGG-EFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPG-LWAEAISCACHQMNCTATTGNPGHKSPYELFH 156          
BLAST of mRNA_H-paniculata_contig14269.2587.1 vs. uniprot
Match: UPI0011DF2343 (uncharacterized protein LOC115720458 n=1 Tax=Cannabis sativa TaxID=3483 RepID=UPI0011DF2343)

HSP 1 Score: 88.2 bits (217), Expect = 3.130e-16
Identity = 57/158 (36.08%), Postives = 83/158 (52.53%), Query Frame = 0
Query:   55 VDDYTRFKVVKFVKNKSDTTAALSSLIADYIT-LPRNVDQLYQ--DGKPREFEGK-FQRELDRLGITHEHTSPDTPQYNGVTERSLGLLRENSIALLEDFDVINVKR--EMLWAQAMLFTCDVTNKSVKMSTEGEKSPYELWNGKAPTPDHLQQFGTI 206
            VDD++RF  V F+K KSDT  A SSL           + ++Y+      +EFE + F +  D++GI HE ++P TPQ NG+ ER    L+E +  +L       V+R     W + M   C + N+ V + T   ++PYELW GK P   H+  FG I
Sbjct:  983 VDDFSRFTWVNFLKEKSDTFGAFSSLCLKLQNEKDATIGKVYRVRSDHGKEFENEIFAQFCDKMGINHEFSAPKTPQQNGIVERKNRTLQEMARVML-------VQRGCNCFWVKQMNTRCYICNR-VHLRTGATQTPYELWKGKTPNLSHVHIFGCI 1132          
BLAST of mRNA_H-paniculata_contig14269.2587.1 vs. uniprot
Match: A0A6H5K2B9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B9_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 3.090e-15
Identity = 56/183 (30.60%), Postives = 84/183 (45.90%), Query Frame = 0
Query:   56 DDYTRFKVVKFVKNKSDTTAALSSLIADYIT--LPRNVDQLYQDGKPREFEGKFQRELDRLGITHEHTSPDTPQYNGVTERSLGLLRENSIALLEDFDVINV---KREMLWAQAMLFTCDVTNKSVKMSTEGEKSPYELWNGKAPTPDHLQQFGTIGDARKTAREHKMASEEENCVFMGIPRN 233
            D YTR+  V F+K+KSD   A    +A+      P +V  +  D     FEG+F R   +  I  E T   +P+YNGV ER LGL+++  +        +         LWA+A+ ++C+  N +   S   +KSPYE+W+G  P P     F       K    HK     + C ++G   N
Sbjct:  367 DGYTRWSHVYFLKHKSDAAEAFERYLAENRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERVLGLIKDAELVARIHAPTLYSGPPNYPSLWAEAIAWSCNSLNCTSTTSNPEKKSPYEIWHGHPPLPGATYPFLKPA-VYKDKGTHKSEPTAQKCFYLGPGTN 548          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14269.2587.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LL52_9PHAE3.850e-1936.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JTI6_9PHAE9.730e-1932.40Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZQ8_9PHAE9.800e-1932.40Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE9.850e-1932.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE9.900e-1932.40Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5K1N9_9PHAE3.140e-1832.40Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JXF7_9PHAE3.610e-1731.28Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKB4_9PHAE4.070e-1741.55Integrase catalytic domain-containing protein n=1 ... [more]
UPI0011DF23433.130e-1636.08uncharacterized protein LOC115720458 n=1 Tax=Canna... [more]
A0A6H5K2B9_9PHAE3.090e-1530.60Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 46..225
e-value: 1.1E-13
score: 52.8
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 51..141
e-value: 4.9E-9
score: 36.4
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 5..194
score: 14.009
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 52..200

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14269contigH-paniculata_contig14269:2024..2758 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14269.2587.1mRNA_H-paniculata_contig14269.2587.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig14269 55..6168 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig14269.2587.1 ID=prot_H-paniculata_contig14269.2587.1|Name=mRNA_H-paniculata_contig14269.2587.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=245bp
MRLLRGVLPGGSEKTCRAQDDEQASGRKGEAIRRRCGGGNEAHEPGREQL
RCHFVDDYTRFKVVKFVKNKSDTTAALSSLIADYITLPRNVDQLYQDGKP
REFEGKFQRELDRLGITHEHTSPDTPQYNGVTERSLGLLRENSIALLEDF
DVINVKREMLWAQAMLFTCDVTNKSVKMSTEGEKSPYELWNGKAPTPDHL
QQFGTIGDARKTAREHKMASEEENCVFMGIPRNFPMVPSAYWSW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf