prot_H-paniculata_contig1417.2533.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1417.2533.1
Unique Nameprot_H-paniculata_contig1417.2533.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length243
Homology
BLAST of mRNA_H-paniculata_contig1417.2533.1 vs. uniprot
Match: D7G2Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z9_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 5.970e-45
Identity = 95/245 (38.78%), Postives = 146/245 (59.59%), Query Frame = 0
Query:    2 LGVVETIVFLVYATRGLSSKTNYETVLFSLLAIFDFMGFIVATIVGLKYMSANADSRFDSIGNRRTATRDHLHNLVYPRSAVRSRKRRDFAAIAWFGVLVAIIPVLFLLSYYPVWRTQYDESPLNVRLGPSIFATVALFQGVGGMVLINRRSGCNESTYLLVTFYAYMKLMSVYVLTCGGSRLLWGAESGVVGA------VVGLLTVALQLVEIASAFFASFQYFGDLEDEDMPELHKMGGLLCY 240
            LG++E  VF+VY   G S   ++E V+F  LA F+F+G +   +     +  N  +  D   N +T TRD LHN+VYPR   RSRKRRDFAA+A +G+L+A++PV+ LLS++P W + +DE P+ +R+ PS+ A VA+ + + G   ++     N+S ++L   YA+ K+MS+++L CG +RLL G E G  G       V+G+    LQL+++ASA  A+  Y     DE +P L     L  +
Sbjct:   48 LGLLEVWVFIVYVF-GNSGFEHFEGVIFDALAAFEFLGRMPGMLA--LCLVCNNSTSIDHPENIKTITRDQLHNMVYPRDPPRSRKRRDFAAMALYGMLIAVVPVVILLSFFPTWTSLFDE-PVWIRVVPSVLAVVAVIESMAGSAYMD----ANQSCFVLTVMYAHTKIMSLFLLVCGANRLLLG-EEGEDGXXXXXVMVLGIPLAILQLIKVASAGVAAVNYLRGRPDERLPTLRGTLRLCAF 283          
BLAST of mRNA_H-paniculata_contig1417.2533.1 vs. uniprot
Match: A0A6H5L4J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4J0_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 9.680e-43
Identity = 85/210 (40.48%), Postives = 129/210 (61.43%), Query Frame = 0
Query:   27 VLFSLLAIFDFMGFIVATIVGLKYMSANADSRFDSIGNRRTATRDHLHNLVYPRSAVRSRKRRDFAAIAWFGVLVAIIPVLFLLSYYPVWRTQYDESPLNVRLGPSIFATVALFQGVGGMVLINRRSGCNESTYLLVTFYAYMKLMSVYVLTCGGSRLLWGAESGVVGA-----VVGLLTVALQLVEIASAFFASFQYFGDLEDEDMPEL 231
            V+FS+LA F+F+G +   +     +  N  +  D   N +T TRD LHN+VYPR   RSRKRRDFAA+A +G+L A++PV+ LLS++P W + +DE P+ +R+ PS+ A VA+ + + G   I+     N+S ++L   YA+ K+MS+++L CG +RLL G E    G      V+G+    LQL+++ASA  A+  Y     DE +P L
Sbjct:   31 VIFSMLAAFEFLGRMPGMLA--LCLVCNNSTSIDHPENIKTITRDQLHNMVYPRDPPRSRKRRDFAAMALYGMLAAVVPVVILLSFFPTWTSLFDE-PVWIRVVPSVLAVVAVIESMAGSAYID----ANQSCFVLTVMYAHTKIMSLFLLVCGANRLLLGEEGEDGGGDKGVMVLGIPLAILQLIKVASAGVAAVNYLRGRPDERLPTL 233          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1417.2533.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2Z9_ECTSI5.970e-4538.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4J0_9PHAE9.680e-4340.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 192..215
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 27..48
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 133..149
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 91..113
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 114..132
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 161..186
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..26
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 216..242
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 187..191
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 150..160
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 49..90
NoneNo IPR availableTMHMMTMhelixcoord: 158..177
NoneNo IPR availableTMHMMTMhelixcoord: 26..48
NoneNo IPR availableTMHMMTMhelixcoord: 129..151
NoneNo IPR availableTMHMMTMhelixcoord: 92..114
NoneNo IPR availableTMHMMTMhelixcoord: 192..214

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1417contigH-paniculata_contig1417:20717..25910 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1417.2533.1mRNA_H-paniculata_contig1417.2533.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1417 19016..26181 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1417.2533.1 ID=prot_H-paniculata_contig1417.2533.1|Name=mRNA_H-paniculata_contig1417.2533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=243bp
MLGVVETIVFLVYATRGLSSKTNYETVLFSLLAIFDFMGFIVATIVGLKY
MSANADSRFDSIGNRRTATRDHLHNLVYPRSAVRSRKRRDFAAIAWFGVL
VAIIPVLFLLSYYPVWRTQYDESPLNVRLGPSIFATVALFQGVGGMVLIN
RRSGCNESTYLLVTFYAYMKLMSVYVLTCGGSRLLWGAESGVVGAVVGLL
TVALQLVEIASAFFASFQYFGDLEDEDMPELHKMGGLLCYHA*
back to top