prot_H-paniculata_contig1398.2428.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1398.2428.1
Unique Nameprot_H-paniculata_contig1398.2428.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length380
Homology
BLAST of mRNA_H-paniculata_contig1398.2428.1 vs. uniprot
Match: A0A6H5J6J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6J4_9PHAE)

HSP 1 Score: 348 bits (892), Expect = 9.460e-115
Identity = 194/356 (54.49%), Postives = 242/356 (67.98%), Query Frame = 0
Query:   29 IEITSPTSESAYHVGDEVLVQWFYDGTGEKFQIELLKEGNMVADLCASEEEGLCFDLTHDQTVLLPSADLESGSDYTITVKDISSDAQHVSEPFTIIGDPDSNIEITAPDGTRSLNAGDEIEVEWLYVGNNELFDIYLRQGDGDLSVRVSENLCIGEPDGSCVAS-NIGSAVVTLPAELEDGADYSLLVVDRRDDDAYGMSRSLSVGVDVSSAGNGDGVSTGTSIAIVIAACVGGICLIAVLMGLLRXXXXXXXXXXXLATLGALQKRRSAPPVVLAVEDMQQPDTPESDDPKDSAENFINPIYSTSQSY----YEGQITPPPEDTTLWRRSREAGRFMGRQISRSFSRSQSLINE 379
            ++I+SP S S+YH GD V VQW Y+GTGE F I LLK    VADLC++EE G+CFDLT DQTV+LP   LESGSDYT+ V+D SSD +  SE FTIIG   SN+EIT+PDG  +LNAG  + V WLYVG N  FDIYLRQ +G+   RVS NLC  +  GSC A+  + SA +TLP E+E+ ADY LLVVD+ +DDA+G+S  L VGV  +S   G   S  T +A+VI    GG+CL+AVL+  LR           LATL  L KRR AP V LAVE M +PD+P+          FINPIY+TSQ++    YEGQITPP  D+ +WRRSR+ GR++GR IS+SFS SQS +N+
Sbjct:   34 LDISSPASTSSYHAGDAVPVQWIYEGTGENFAIHLLKGDEEVADLCSAEENGVCFDLTQDQTVILPDTGLESGSDYTVRVRDQSSDLEDTSETFTIIGTSTSNVEITSPDGYTTLNAGGVVSVSWLYVGENMEFDIYLRQ-NGE---RVSSNLCADQEGGSCTATIPVASATITLPEEIENAADYRLLVVDKVNDDAWGLSVELPVGVAAASVDTGSDSSAATKLALVIGLSAGGVCLLAVLLAGLRTRNKNRRREEKLATLDMLNKRRPAPSVSLAVEGMAEPDSPDQ-------RAFINPIYTTSQTFHAEQYEGQITPPTGDSAMWRRSRDLGRYVGRTISKSFSHSQSNMND 378          
BLAST of mRNA_H-paniculata_contig1398.2428.1 vs. uniprot
Match: D7G260_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G260_ECTSI)

HSP 1 Score: 286 bits (733), Expect = 6.820e-91
Identity = 158/288 (54.86%), Postives = 196/288 (68.06%), Query Frame = 0
Query:   29 IEITSPTSESAYHVGDEVLVQWFYDGTGEKFQIELLKEGNMVADLCASEEEGLCFDLTHDQTVLLPSADLESGSDYTITVKDISSDAQHVSEPFTIIGDPDSNIEITAPDGTRSLNAGDEIEVEWLYVGNNELFDIYLRQGDGDLSVRVSENLCIGEPDGSCVAS-NIGSAVVTLPAELEDGADYSLLVVDRRDDDAYGMSRSLSVGVDVSSAGNGDGVSTGTSIAIVIAACVGGICLIAVLMGLLRXXXXXXXXXXXLATLGALQKRRSAPPVVLAVEDMQQPDTPE 315
            ++I+SP S S+YH GD V V+W Y+GTGE F I LLK    VADLC +EE G+CFDLT +QTV+LP  DLESGSDYT+ V+D SSD +  SE FTIIG   SN+EIT+PDG  +LNAG ++ V WLYVG N  FDIYLRQ DG+   RVS NLC  +  GSC A+  + SA +TLP E+E+GADY LLVVD+ +DDA+G+S  L VGV  +S   G   S  T +A+VI    GG+CL+AVL+   R           LATL  L KRR AP V LAVE M +PD+P+
Sbjct:   36 LDISSPASTSSYHAGDAVPVEWIYEGTGENFAIHLLKGDEEVADLCFAEENGVCFDLTQEQTVILPDTDLESGSDYTVRVRDQSSDLEDTSETFTIIGTSTSNVEITSPDGYTTLNAGGDLSVSWLYVGENTEFDIYLRQ-DGE---RVSNNLCADQEGGSCTATIPVASATITLPEEIENGADYRLLVVDKVNDDAWGLSVELPVGVAAASVDTGSDSSAATKLALVIGLSAGGVCLLAVLLAGFRTKNKNRRREEKLATLDMLNKRRPAPSVSLAVEGMAEPDSPD 319          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1398.2428.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J6J4_9PHAE9.460e-11554.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G260_ECTSI6.820e-9154.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 14..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..26
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 252..273
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..251
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 274..379
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..26
score: 0.668
NoneNo IPR availableTMHMMTMhelixcoord: 251..273

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1398contigH-paniculata_contig1398:8428..15916 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1398.2428.1mRNA_H-paniculata_contig1398.2428.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1398 7238..16401 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1398.2428.1 ID=prot_H-paniculata_contig1398.2428.1|Name=mRNA_H-paniculata_contig1398.2428.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=380bp
MMAMLSSRRSARSSLPLLSMLVLSSAVDIEITSPTSESAYHVGDEVLVQW
FYDGTGEKFQIELLKEGNMVADLCASEEEGLCFDLTHDQTVLLPSADLES
GSDYTITVKDISSDAQHVSEPFTIIGDPDSNIEITAPDGTRSLNAGDEIE
VEWLYVGNNELFDIYLRQGDGDLSVRVSENLCIGEPDGSCVASNIGSAVV
TLPAELEDGADYSLLVVDRRDDDAYGMSRSLSVGVDVSSAGNGDGVSTGT
SIAIVIAACVGGICLIAVLMGLLRRRKRERRREEKLATLGALQKRRSAPP
VVLAVEDMQQPDTPESDDPKDSAENFINPIYSTSQSYYEGQITPPPEDTT
LWRRSREAGRFMGRQISRSFSRSQSLINE*
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