prot_H-paniculata_contig12.1271.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig12.1271.1
Unique Nameprot_H-paniculata_contig12.1271.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length591
Homology
BLAST of mRNA_H-paniculata_contig12.1271.1 vs. uniprot
Match: D7G6B8_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6B8_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 2.400e-51
Identity = 108/201 (53.73%), Postives = 133/201 (66.17%), Query Frame = 0
Query:   62 SDDALPSGFSGVDAFLIARLNDSSSYFFTWFCKRYRIRIGD-QDVGSKLEIQRCPICLDTCTKSIELQCGHAFCRPCLTTAAANKITSCALCRREQVINPELLRAQFDKQRMLNLAQRLAIPAPLRPCTPTSEFSTTVNFGQKLDLAATTAAKGEGKGVKGSDKAASSSSSADSMTTHGHLLFGPWGDVGAMTPQELRRRW 261
            +D AL +G +  D F+++RLND++SYFFTWFCK+YRI+IG  + +G K E  RCPICLD+CTKSIELQCGH+FCR CL  +AAN +TSCALCRREQ I+PE LRA+FD+QRMLNLAQRLAIP P     PT                AT AA    +G     +         + TT   +LFG  GDVGAM+  +LRRRW
Sbjct:    8 ADGALRTGIAPADVFILSRLNDTTSYFFTWFCKKYRIQIGPPRGLGGKEEKTRCPICLDSCTKSIELQCGHSFCRSCLIQSAANNMTSCALCRREQEIDPEQLRARFDEQRMLNLAQRLAIPPPPVRSRPT----------------ATGAAMSASEGACEEKEVRVRVGVVPTSTTQREVLFGLGGDVGAMSSDDLRRRW 192          
BLAST of mRNA_H-paniculata_contig12.1271.1 vs. uniprot
Match: A0A6H5JF26_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF26_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 6.750e-48
Identity = 105/202 (51.98%), Postives = 133/202 (65.84%), Query Frame = 0
Query:   62 SDDALPSGFSGVDAFLIARLNDSSSYFFTWFCKRYRIRIGD-QDVGSKLEIQRCPICLDTCTKSIELQCGHAFCRPCLTTAAANKITSCALCRREQVINPELLRAQFDKQRMLNLAQRLAI-PAPLRPCTPTSEFSTTVNFGQKLDLAATTAAKGEGKGVKGSDKAASSSSSADSMTTHGHLLFGPWGDVGAMTPQELRRRW 261
            +D  L +G +  D F+++RLND++SYFF WFCK+YRI+IG  + +G K E  RCPICLD+CTKSIELQCGH+FCR CL  +AAN +TSCALCRREQ I+PE LRA+FD+QRMLNLAQRLAI P PLR     +  + + + G             E K V+   K   +S      TT   +  G  GDVGAM+  +LRRRW
Sbjct:    8 ADGTLRAGIAPADVFILSRLNDTTSYFFAWFCKKYRIQIGPPRGLGGKEENTRCPICLDSCTKSIELQCGHSFCRSCLIRSAANNMTSCALCRREQEIDPEQLRARFDEQRMLNLAQRLAILPPPLRSRPSATSAAMSASEGAY-----------EEKDVRVRVKVVPTS------TTGREVFVGLGGDVGAMSSDDLRRRW 192          
BLAST of mRNA_H-paniculata_contig12.1271.1 vs. uniprot
Match: A0A836CQW4_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQW4_9STRA)

HSP 1 Score: 144 bits (362), Expect = 2.420e-32
Identity = 70/141 (49.65%), Postives = 95/141 (67.38%), Query Frame = 0
Query:   39 SRVVKLSRSLSLDKRMIFDANGQSDDALPSGFSGVDAFLIARLNDSSSYFFTWFCKRYRIRIGDQDVGSKLEIQRCPICLDTCTKSIELQCGHAFCRPCLTTAAANKITSCALCRREQVINPELLRAQFDKQRMLNLAQRL 179
            +R V  +  L++D   ++  +G   D +P G   +D F++ARLND +SYF TWFCK +R+R+             CPICLDT T SI+LQCGHAFCR CL  +AA   T+CALCRREQ+++P+ LR QFD++RM NLA+RL
Sbjct:  178 TRAVTGTSRLAMDPATLYARHGAGAD-MPKGEGALDNFIVARLNDETSYFMTWFCKHFRLRLNTAPSS-------CPICLDTVTNSIQLQCGHAFCRSCLAASAACNFTTCALCRREQILHPDELRQQFDQRRMANLARRL 310          
BLAST of mRNA_H-paniculata_contig12.1271.1 vs. uniprot
Match: A0A7S3XVA3_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVA3_HETAK)

HSP 1 Score: 117 bits (293), Expect = 5.070e-24
Identity = 57/110 (51.82%), Postives = 76/110 (69.09%), Query Frame = 0
Query:   69 GFSGVDAFLIARLNDSSSYFFTWFCKRYRIRIGDQDVGSKLEIQRCPICLDTCTKSIELQCGHAFCRPCLTTAAANKITSCALCRREQVINPELLRAQFDKQRMLNLAQR 178
            G SG D FL++R+ND SSYF+TWFCKR+  ++      +K   + CPICL++   SIELQCGH+FCR CLT +A  KI+ C LCR    +NPE+LR  F+ QR+ NL +R
Sbjct:   36 GKSG-DVFLVSRMNDESSYFYTWFCKRFEFKLK----ANKTYKENCPICLESELHSIELQCGHSFCRGCLTHSAEMKISCCPLCRANICLNPEVLRKNFEDQRIRNLMRR 140          
BLAST of mRNA_H-paniculata_contig12.1271.1 vs. uniprot
Match: A0A4D9CMH2_9STRA (RING-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CMH2_9STRA)

HSP 1 Score: 114 bits (285), Expect = 4.160e-23
Identity = 52/106 (49.06%), Postives = 69/106 (65.09%), Query Frame = 0
Query:   74 DAFLIARLNDSSSYFFTWFCKRYRIRIGDQDVGSKLEIQRCPICLDTCTKSIELQCGHAFCRPCLTTAAANKITSCALCRREQVINPELLRAQFDKQRMLNLAQRL 179
            D F ++RLND ++YFF W CKRY + +       K E   CPICL+T   SI+L CGH FCR CL  AA  K++SCALCR+   ++P++LR QF  QR  N++ RL
Sbjct:   69 DVFYLSRLNDPTTYFFQWICKRYGLTV-------KAEPHSCPICLETSENSIQLSCGHTFCRQCLKAAAEQKMSSCALCRKSHTLDPDVLRQQFQTQRFANMSWRL 167          
BLAST of mRNA_H-paniculata_contig12.1271.1 vs. uniprot
Match: A0A401NXX3_SCYTO (Uncharacterized protein n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401NXX3_SCYTO)

HSP 1 Score: 55.8 bits (133), Expect = 9.880e-5
Identity = 28/63 (44.44%), Postives = 33/63 (52.38%), Query Frame = 0
Query:   93 CKRYRIRIGDQDVGSKLEIQRCPICLDTCTKSIELQCGHAFCRPCLTTAAANKITSCALCRRE 155
            C++ R     Q V S  E   CPICLD  T  + L CGH FCR C++     KI SC  CR E
Sbjct:   40 CRKRRNMASRQQVRSLSEETICPICLDFFTDPVILNCGHNFCRSCVSQCWEKKINSCPECREE 102          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12.1271.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G6B8_ECTSI2.400e-5153.73RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JF26_9PHAE6.750e-4851.98RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A836CQW4_9STRA2.420e-3249.65RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A7S3XVA3_HETAK5.070e-2451.82Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A4D9CMH2_9STRA4.160e-2349.06RING-type domain-containing protein n=2 Tax=Monodo... [more]
A0A401NXX3_SCYTO9.880e-544.44Uncharacterized protein n=1 Tax=Scyliorhinus toraz... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 114..152
e-value: 5.6E-6
score: 35.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 114..153
score: 11.471
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 114..152
e-value: 6.1E-6
score: 26.0
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 101..181
e-value: 9.7E-12
score: 46.9
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 129..138
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 109..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12contigH-paniculata_contig12:24851..32310 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12.1271.1mRNA_H-paniculata_contig12.1271.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig12 23565..32652 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig12.1271.1 ID=prot_H-paniculata_contig12.1271.1|Name=mRNA_H-paniculata_contig12.1271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=591bp
MEALGREGSMRADLTWSGVRVEEPSRGRKLTRSKVPHSSRVVKLSRSLSL
DKRMIFDANGQSDDALPSGFSGVDAFLIARLNDSSSYFFTWFCKRYRIRI
GDQDVGSKLEIQRCPICLDTCTKSIELQCGHAFCRPCLTTAAANKITSCA
LCRREQVINPELLRAQFDKQRMLNLAQRLAIPAPLRPCTPTSEFSTTVNF
GQKLDLAATTAAKGEGKGVKGSDKAASSSSSADSMTTHGHLLFGPWGDVG
AMTPQELRRRWKLFSLTEDVGAMPVKKLKSSWQELQRASRASAVVSAVEH
GALEVPPIVSTSSQPSQAVHDWPRDVSSRHNVAPGASLDGQPGPGPTVAS
TETSVGAACPVELSARWRALTRVPLATGFLRASSITSGQSLAGLADVEPQ
VTSAAKPKHMLPVTCTDTSESGIMRCSQTVGHLTSAELRQRWNQAFQSVD
SGVGATAVSDLAARLELARGPQGVGGMSSKNLAKRWVSTTLQCAESSHEE
GCATPLDKDGLGGGPDLGYMMAPIDGGGVVNADRVTDEGLLGATLVMKDK
RFLSASNPVTLTSCPDVGAVTMATLRMRWCAARAPPAPLS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR018957Znf_C3HC4_RING-type
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS