prot_H-paniculata_contig11938.1233.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig11938.1233.1
Unique Nameprot_H-paniculata_contig11938.1233.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length1144
Homology
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BLAST of mRNA_H-paniculata_contig11938.1233.1 vs. uniprot
Match: D8LF17_ECTSI (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF17_ECTSI)

HSP 1 Score: 339 bits (869), Expect = 2.360e-97
Identity = 214/527 (40.61%), Postives = 278/527 (52.75%), Query Frame = 0 
Query:   67 LACTCIDSSSESCVVVGYEQGLVHVYNRVLIPNISTGDTYFDSELRDFEEARWKHTTVHPTRA--------ISNSRVLVAPPDITCIQRGPGG-VLAVGTSDGLVFITQLPPKDGARS------RGVGFHHDCHEGRRVNCLLWDPSGDRLFSVCEGGTVILAKNLKQLQKPSPRSPGGMANMVNSLVPFFGGPSVKLVEWKEPVAPKAFLVVNLGSPGVQLDLGRAKTALPDVK---LDCDVLLVMTRRRAVLLYFGVGDDISGIKPYETSVDLNITTESIKSSKDGPGPRSARPP------SNADFGGCLWGPPQT----GDGSDPSYSSTKRSVRTRGSDALGGEPFDQLD-------------VPRTVTVAYIAQPGGRLWRVGLSDGEVDSTFRPPIMVGHSGEASGAVTGRHVEIGRMQTVHAGASQAIFCWKSGGIDIAEPEGELVLLDSTNHTFVDSCLGLRDVVGFSGGRLADCSKVGSEPTVALADMKLRTVAA-VRVLRGGEIAAVTELYCAEEAE 551
            L  TC+ SS  S V VG+E+G+VHVY R           + D   R  EE RWK T ++PTRA        I +      PPDITC+   PGG  LAVGTSDG VF+TQ PP     S      RG GFHH  H G+R+NCLLW  SGD+L+SVCEGGTV+LA+NL+  +      P G+  ++  L       S K      P +P+A +V + GSPGV LDLGR + +LP      L CDVLLVMTR++AVL YF VG+D+S + P++TSVDLN+   +   +    G             S  DFGGCLWGP Q     G                RG  + G    ++ +              PR V  AY+AQPGGRLWRVGLSDGEV+ST RP + V   G+     +G  VE+G M  V  G ++A+ CW+SG    ++  GE  LLD   H+FV +C G+   V  SG  L+   +     ++     +L  +   VRVL GG++A VT LY   E E
Sbjct:   57 LVSTCLHSSVSSAVAVGFERGVVHVYYR----------QHEDRVRRSSEEERWKRTVIYPTRALGSGVASPIESPAAAAVPPDITCVAIAPGGGKLAVGTSDGFVFVTQAPPPPTGGSPGTGWARGSGFHHKSHRGKRINCLLWANSGDQLYSVCEGGTVVLARNLRPRRGAPAAGPAGITGVMQFLGVHQPDDSTKA---DTPASPQAIVVGHTGSPGVSLDLGRTRASLPGATKGFLACDVLLVMTRKQAVLFYFAVGEDVSIVAPHKTSVDLNVVDHTTADTGQPSGGNXXXXXXXXXXXSRTDFGGCLWGPAQMPGVGGXXXXXXXXXXXXXXXARGRSSAGMRTPERRESCEALPAAAAVAAAPRAVLFAYVAQPGGRLWRVGLSDGEVESTHRP-LGVDEGGDGLPVESG--VELGEMWAVDVGDARALLCWRSGFT--SKKGGEFALLDPNTHSFVAACPGMSGTVDVSGFVLSPLPQSAGGGSLQSIRQRLEVLGGGVRVLHGGDLAKVTMLYHNAEGE 565
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11938.1233.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LF17_ECTSI2.360e-9740.61Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 15..226
e-value: 8.2E-8
score: 34.0
NoneNo IPR availablePANTHERPTHR23287RUBY-EYE2-LIKE PROTEINcoord: 66..423
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 69..214

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11938contigH-paniculata_contig11938:605..7510 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11938.1233.1mRNA_H-paniculata_contig11938.1233.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig11938 532..7510 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig11938.1233.1 ID=prot_H-paniculata_contig11938.1233.1|Name=mRNA_H-paniculata_contig11938.1233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1144bp
MKERVLFHLRLETRNAYGNSRVNSATTAENEQHDSVADTSASALQKAGKA
HCNNYQQGGLNDTQDVLACTCIDSSSESCVVVGYEQGLVHVYNRVLIPNI
STGDTYFDSELRDFEEARWKHTTVHPTRAISNSRVLVAPPDITCIQRGPG
GVLAVGTSDGLVFITQLPPKDGARSRGVGFHHDCHEGRRVNCLLWDPSGD
RLFSVCEGGTVILAKNLKQLQKPSPRSPGGMANMVNSLVPFFGGPSVKLV
EWKEPVAPKAFLVVNLGSPGVQLDLGRAKTALPDVKLDCDVLLVMTRRRA
VLLYFGVGDDISGIKPYETSVDLNITTESIKSSKDGPGPRSARPPSNADF
GGCLWGPPQTGDGSDPSYSSTKRSVRTRGSDALGGEPFDQLDVPRTVTVA
YIAQPGGRLWRVGLSDGEVDSTFRPPIMVGHSGEASGAVTGRHVEIGRMQ
TVHAGASQAIFCWKSGGIDIAEPEGELVLLDSTNHTFVDSCLGLRDVVGF
SGGRLADCSKVGSEPTVALADMKLRTVAAVRVLRGGEIAAVTELYCAEEA
EEEDADNDVEKKTEVDCEVAVVESAEGVVEDAELAEITLGDTAEELSVER
IAARTIQRVWRERRRKRLAAWQASIVPSYNYKIKPTPPSGEASSEPPTNA
AVRGATKGRARLGGSFSTNQYERGAQALGVDSRGGDGFSILESLGALDAA
ERVLRLSNSQKNVSNVDLAVRATSAPTATTGGWSSDEVSKRWLNYHSRSR
LGTSNSEGSGGGGSSGSGAEASRPTTTRSLMRATDKLLQETVPVLRRTRS
LLIFSPPTQSPLGEDVRTRALEGWDGPGRGMQAAMALAAEEKKVEMLAAA
TAAAVAAAEVAEAAATKEEEEKDGHVVKDQGVGTDGETPDTAGSEAGGIS
WDSRVLQPTPTRVSSIPYPGSQHTRLYMGGVSPSATSTMPFPQHALAMGS
RRHSSPQSKPHKNLLGPVQNVVGTLLQRSVQAVNDALQPGGGAMSDDDDS
SPYDDEETMMFAHEQQGSLEDLSLEHSHSRDDADVIGADGGTTSNTGRTV
YSTQFSWDSCRSDYRSDNRSEDEAGIGYRGGSAVTAPPKKQFVVALDASM
ENEGYNGKTGAKETHGEKKSSGNKKWLLERRMLDIRRQRLATLR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf