prot_H-paniculata_contig1180.1152.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1180.1152.1
Unique Nameprot_H-paniculata_contig1180.1152.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length110
Homology
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BLAST of mRNA_H-paniculata_contig1180.1152.1 vs. uniprot
Match: D8LSS7_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSS7_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.780e-30
Identity = 68/94 (72.34%), Postives = 78/94 (82.98%), Query Frame = 0 
Query:    8 RLLRRLWPLLRQLLLVTSLSLPPALAYTLRKFIGATARRRVLPELPFSDFWRDANTGRLSEVLISDSYVDVRLRDGLTIGGDGRAAAGAGATEA 101
            RLLRRLWPLLRQLLL+TSLSLPPALA+ +RK IGA  RRR +PEL FS FWRDA+ GRL EVLISD++VDV+LRDGL +G DG   AG+ AT A
Sbjct:    9 RLLRRLWPLLRQLLLLTSLSLPPALAFAIRKIIGA--RRRAMPELSFSAFWRDASLGRLQEVLISDNHVDVKLRDGLVVG-DGGGRAGSAATAA 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1180.1152.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSS7_ECTSI1.780e-3072.34AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 109..110
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..110
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 20..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..33
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 29..33

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1180contigH-paniculata_contig1180:15167..27022 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1180.1152.1mRNA_H-paniculata_contig1180.1152.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1180 14940..27022 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1180.1152.1 ID=prot_H-paniculata_contig1180.1152.1|Name=mRNA_H-paniculata_contig1180.1152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MPLGPLLRLLRRLWPLLRQLLLVTSLSLPPALAYTLRKFIGATARRRVLP
ELPFSDFWRDANTGRLSEVLISDSYVDVRLRDGLTIGGDGRAAAGAGATE
ATGWGAGGAS
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