prot_H-paniculata_contig11681.1075.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig11681.1075.1
Unique Nameprot_H-paniculata_contig11681.1075.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length213
Homology
[Close]
BLAST of mRNA_H-paniculata_contig11681.1075.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 4.910e-14
Identity = 44/106 (41.51%), Postives = 66/106 (62.26%), Query Frame = 0 
Query:   71 MDRDQDPDDFFFVLDECRQTLGDIGQTVHDERYEDVVLQALPTEYIRVRITSFEKRDFELDGIRHMVHTMYVTNLSRSSNFKPTAGRGTTMQAAGYNDSNVQCNYC 176
            M + +DPD FF  +++ RQ   D+ + + DER+EDV+LQA+  +Y  VR TSF  R F L+ I+  + +MY+ +LSR+   K  AGRG  M A+   DS ++C  C
Sbjct:    1 MAQGEDPDGFFITVEDVRQRPKDMVEIISDERFEDVILQAISNDYDYVRPTSFRVRHFGLEEIKTTMKSMYIDSLSRTWT-KSVAGRGVAMPASN-GDSIIKCFNC 104
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11681.1075.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JWF9_9PHAE4.910e-1441.51Integrase catalytic domain-containing protein n=1 ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 42..119
e-value: 2.1E-8
score: 33.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11681contigH-paniculata_contig11681:6783..7421 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11681.1075.1mRNA_H-paniculata_contig11681.1075.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig11681 204..7704 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig11681.1075.1 ID=prot_H-paniculata_contig11681.1075.1|Name=mRNA_H-paniculata_contig11681.1075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=213bp
MWKQASQDLWNVLRFTTSGSANNVVKKFEGKRPDDGTGDGQAVWNPLVDK
YKNHTIEDRRTCHEKLVSTRMDRDQDPDDFFFVLDECRQTLGDIGQTVHD
ERYEDVVLQALPTEYIRVRITSFEKRDFELDGIRHMVHTMYVTNLSRSSN
FKPTAGRGTTMQAAGYNDSNVQCNYCKGVVHVKQDCAVRQAKKHRQKVGG
GHARQGGAGKQK*
back to top