prot_H-paniculata_contig11324.852.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig11324.852.1
Unique Nameprot_H-paniculata_contig11324.852.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length55
Homology
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BLAST of mRNA_H-paniculata_contig11324.852.1 vs. uniprot
Match: A0A835YUK5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUK5_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.170e-7
Identity = 28/44 (63.64%), Postives = 29/44 (65.91%), Query Frame = 0 
Query:    2 KSGV-----AFGLTSSRYHCVSCGNAFVQEFCSKRVPLPHHGLE 40
            KSGV     AFGLT SRY+CVSCG AF  E C    PL HHGLE
Sbjct:  306 KSGVGLDNLAFGLTQSRYNCVSCGRAFTFEHCHLECPLVHHGLE 349
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11324.852.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YUK5_9STRA1.170e-763.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..53
e-value: 1.8E-7
score: 33.0
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 5..41

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11324contigH-paniculata_contig11324:617..781 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11324.852.1mRNA_H-paniculata_contig11324.852.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig11324 608..781 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig11324.852.1 ID=prot_H-paniculata_contig11324.852.1|Name=mRNA_H-paniculata_contig11324.852.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
MKSGVAFGLTSSRYHCVSCGNAFVQEFCSKRVPLPHHGLEEVTLVHMKTS
ACIP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD